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Items: 20

1.
A CRISPR-based screen for Hedgehog signaling provides insights into ciliary function and ciliopathies
David K. Breslow, Sascha Hoogendoorn, Adam R. Kopp, David W. Morgens, Brandon K. Vu, Margaret C. Kennedy, Kyuho Han, Amy Li, Gaelen T. Hess, Michael C. Bassik, James K. Chen, Maxence V. Nachury
Nat Genet. Author manuscript; available in PMC 2018 Aug 19.
Published in final edited form as: Nat Genet. 2018 Mar; 50(3): 460–471. Published online 2018 Feb 19. doi: 10.1038/s41588-018-0054-7
PMCID:
PMC5862771
AbstractArticlePDF–2.5M
2.
Signatures of Altered Gene Expression in Dorsal Root Ganglia of a Fabry Disease Mouse Model
Kai K. Kummer, Theodora Kalpachidou, Michaela Kress, Michiel Langeslag
Front Mol Neurosci. 2017; 10: 449. Published online 2018 Jan 25. doi: 10.3389/fnmol.2017.00449
PMCID:
PMC5788883
AbstractArticlePDF–5.3M
3.
Binding of estrogen receptors to switch sites and regulatory elements in the immunoglobulin heavy chain locus of activated B cells suggests a direct influence of estrogen on antibody expression
Bart G. Jones, Rhiannon R. Penkert, Beisi Xu, Yiping Fan, Geoff Neale, Patricia J. Gearhart, Julia L. Hurwitz
Mol Immunol. Author manuscript; available in PMC 2017 Sep 1.
Published in final edited form as: Mol Immunol. 2016 Sep; 77: 97–102. Published online 2016 Aug 3. doi: 10.1016/j.molimm.2016.07.015
PMCID:
PMC5010968
AbstractArticlePDF–658K
4.
Aldosterone Promotes Cardiac Endothelial Cell Proliferation In Vivo
Basile Gravez, Antoine Tarjus, Véronique Pelloux, Antoine Ouvrard‐Pascaud, Claude Delcayre, Janelise Samuel, Karine Clément, Nicolette Farman, Fréderic Jaisser, Smail Messaoudi
J Am Heart Assoc. 2015 Jan; 4(1): e001266. Published online 2015 Jan 6. doi: 10.1161/JAHA.114.001266
PMCID:
PMC4330055
AbstractArticlePDF–2.8M
5.
Epigenetic Regulation of Individual Modules of the immunoglobulin heavy chain locus 3′ Regulatory Region
Barbara K. Birshtein
Front Immunol. 2014; 5: 163. Published online 2014 Apr 21. doi: 10.3389/fimmu.2014.00163
PMCID:
PMC4000994
AbstractArticlePDF–812K
6.
RelAp43, a Member of the NF-κB Family Involved in Innate Immune Response against Lyssavirus Infection
Sophie Luco, Olivier Delmas, Pierre-Olivier Vidalain, Frédéric Tangy, Robert Weil, Hervé Bourhy
PLoS Pathog. 2012 Dec; 8(12): e1003060. Published online 2012 Dec 13. doi: 10.1371/journal.ppat.1003060
PMCID:
PMC3521698
AbstractArticlePDF–2.7M
7.
The role of CTCF binding sites in the 3′ immunoglobulin heavy chain regulatory region
Barbara K. Birshtein
Front Genet. 2012; 3: 251. Published online 2012 Nov 16. doi: 10.3389/fgene.2012.00251
PMCID:
PMC3499808
AbstractArticlePDF–1.2M
8.
Germline deletion of Igh 3′ regulatory region elements hs5-7 affects B cell specific regulation, rearrangement and insulation of the Igh locus
Sabrina A. Volpi, Jiyoti Verma-Gaur, Rabih Hassan, Zhongliang Ju, Sergio Roa, Sanjukta Chatterjee, Uwe Werling, Harry Hou, Jr., Britta Will, Ulrich Steidl, Matthew Scharff, Winfried Edelman, Ann J. Feeney, Barbara K. Birshtein
J Immunol. Author manuscript; available in PMC 2013 Mar 15.
Published in final edited form as: J Immunol. 2012 Mar 15; 188(6): 2556–2566. Published online 2012 Feb 17. doi: 10.4049/jimmunol.1102763
PMCID:
PMC3430471
AbstractArticlePDF–1.5M
9.
Regulation of DNA Replication within the Immunoglobulin Heavy-Chain Locus During B Cell Commitment
Agnieszka Demczuk, Michel G. Gauthier, Ingrid Veras, Settapong Kosiyatrakul, Carl L. Schildkraut, Meinrad Busslinger, John Bechhoefer, Paolo Norio
PLoS Biol. 2012 Jul; 10(7): e1001360. Published online 2012 Jul 10. doi: 10.1371/journal.pbio.1001360
PMCID:
PMC3393677
AbstractArticlePDF–1.3M
10.
Enhancement of antibody class switch recombination by the cumulative activity of four separate elements
Wesley A. Dunnick, Jian Shi, Jennifer M. Zerbato, Clinton A. Fontaine, John T. Collins
J Immunol. Author manuscript; available in PMC 2012 Nov 1.
Published in final edited form as: J Immunol. 2011 Nov 1; 187(9): 4733–4743. Published online 2011 Sep 26. doi: 10.4049/jimmunol.1101808
PMCID:
PMC3197901
AbstractArticlePDF–1.2M
11.
Dynamic Changes in Binding of Immunoglobulin Heavy Chain 3′ Regulatory Region to Protein Factors during Class Switching
Sanjukta Chatterjee, Zhongliang Ju, Rabih Hassan, Sabrina A. Volpi, Alexander V. Emelyanov, Barbara K. Birshtein
J Biol Chem. 2011 Aug 19; 286(33): 29303–29312. Published online 2011 Jun 17. doi: 10.1074/jbc.M111.243543
PMCID:
PMC3190736
AbstractArticlePDF–1.4M
12.
Homologous Elements hs3a and hs3b in the 3′ Regulatory Region of the Murine Immunoglobulin Heavy Chain (Igh) Locus Are Both Dispensable for Class-switch Recombination
Yi Yan, Joyce Pieretti, Zhongliang Ju, Shiniu Wei, John R. Christin, Fatmata Bah, Barbara K. Birshtein, Laurel A. Eckhardt
J Biol Chem. 2011 Aug 5; 286(31): 27123–27131. Published online 2011 Jun 14. doi: 10.1074/jbc.M111.230995
Correction in:
J Biol Chem. 2012 Mar 30; 287(14): 11284.
PMCID:
PMC3149305
AbstractArticlePDF–1.8M
13.
Decreased replication origin activity in temporal transition regions
Zeqiang Guan, Christina M. Hughes, Settapong Kosiyatrakul, Paolo Norio, Ranjan Sen, Steven Fiering, C. David Allis, Eric E. Bouhassira, Carl L. Schildkraut
J Cell Biol. 2009 Nov 30; 187(5): 623–635. doi: 10.1083/jcb.200905144
PMCID:
PMC2806585
AbstractArticlePDF–6.2M
14.
Transcription of a Productively Rearranged Ig VDJCα Does Not Require the Presence of HS4 in the Igh 3′ Regulatory Region
Buyi Zhang, Adrienne Alaie-Petrillo, Maria Kon, Fubin Li, Laurel A. Eckhardt
J Immunol. Author manuscript; available in PMC 2009 Aug 10.
Published in final edited form as: J Immunol. 2007 May 15; 178(10): 6297–6306. doi: 10.4049/jimmunol.178.10.6297
PMCID:
PMC2724394
AbstractArticlePDF–2.6M
15.
Pax5 and Linker Histone H1 Coordinate DNA Methylation and Histone Modifications in the 3′ Regulatory Region of the Immunoglobulin Heavy Chain Locus
Vincenzo Giambra, Sabrina Volpi, Alexander V. Emelyanov, David Pflugh, Alfred L. M. Bothwell, Paolo Norio, Yuhong Fan, Zhongliang Ju, Arthur I. Skoultchi, Richard R. Hardy, Domenico Frezza, Barbara K. Birshtein
Mol Cell Biol. 2008 Oct; 28(19): 6123–6133. Published online 2008 Jul 21. doi: 10.1128/MCB.00233-08
PMCID:
PMC2547000
AbstractArticlePDF–1.8M
16.
Chromatin Architecture near a Potential 3′ End of the Igh Locus Involves Modular Regulation of Histone Modifications during B-Cell Development and In Vivo Occupancy at CTCF Sites
Francine E. Garrett, Alexander V. Emelyanov, Manuel A. Sepulveda, Patrick Flanagan, Sabrina Volpi, Fubin Li, Dmitry Loukinov, Laurel A. Eckhardt, Victor V. Lobanenkov, Barbara K. Birshtein
Mol Cell Biol. 2005 Feb; 25(4): 1511–1525. doi: 10.1128/MCB.25.4.1511-1525.2005
PMCID:
PMC548023
AbstractArticlePDF–775K
17.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
18.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
19.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K
20.
The origin of a developmentally regulated Igh replicon is located near the border of regulatory domains for Igh replication and expression
Jie Zhou, Nasrin Ashouian, Marc Delepine, Fumihiko Matsuda, Christophe Chevillard, Roy Riblet, Carl L. Schildkraut, Barbara K. Birshtein
Proc Natl Acad Sci U S A. 2002 Oct 15; 99(21): 13693–13698. Published online 2002 Oct 7. doi: 10.1073/pnas.212392399
PMCID:
PMC129745
AbstractArticlePDF–237K

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