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Items: 1 to 20 of 215

1.
The A2453-C2499 wobble base pair in Escherichia coli 23S ribosomal RNA is responsible for pH sensitivity of the peptidyltransferase active site conformation
Mark A. Bayfield, Jill Thompson, Albert E. Dahlberg
Nucleic Acids Res. 2004; 32(18): 5512–5518. Published online 2004 Oct 12. doi: 10.1093/nar/gkh888
PMCID:
PMC524298
ArticlePDF–466K
2.
E.coli Fis protein activates ribosomal RNA transcription in vitro and in vivo.
W Ross, J F Thompson, J T Newlands, R L Gourse
EMBO J. 1990 Nov; 9(11): 3733–3742. doi: 10.1002/j.1460-2075.1990.tb07586.x
PMCID:
PMC552129
ArticlePDF–2.3M
3.
Influence of the GCGC discriminator motif introduced into the ribosomal RNA P2- and tac promoter on growth-rate control and stringent sensitivity.
M Zacharias, H U Göringer, R Wagner
EMBO J. 1989 Nov; 8(11): 3357–3363. doi: 10.1002/j.1460-2075.1989.tb08498.x
PMCID:
PMC401476
ArticlePDF–907K
4.
Both fis-dependent and factor-independent upstream activation of the rrnB P1 promoter are face of the helix dependent.
J T Newlands, C A Josaitis, W Ross, R L Gourse
Nucleic Acids Res. 1992 Feb 25; 20(4): 719–726. doi: 10.1093/nar/20.4.719
PMCID:
PMC312010
ArticlePDF–1.9M
5.
Active Transcription of rRNA Operons Is a Driving Force for the Distribution of RNA Polymerase in Bacteria: Effect of Extrachromosomal Copies of rrnB on the In Vivo Localization of RNA Polymerase
Julio E. Cabrera, Ding J. Jin
J Bacteriol. 2006 Jun; 188(11): 4007–4014. doi: 10.1128/JB.01893-05
PMCID:
PMC1482923
ArticlePDF–422K
6.
Life History Implications of rRNA Gene Copy Number in Escherichia coli
Bradley S. Stevenson, Thomas M. Schmidt
Appl Environ Microbiol. 2004 Nov; 70(11): 6670–6677. doi: 10.1128/AEM.70.11.6670-6677.2004
PMCID:
PMC525164
ArticlePDF–241K
7.
Changes in Escherichia coli rRNA Promoter Activity Correlate with Changes in Initiating Nucleoside Triphosphate and Guanosine 5′ Diphosphate 3′-Diphosphate Concentrations after Induction of Feedback Control of Ribosome Synthesis
David A. Schneider, Richard L. Gourse
J Bacteriol. 2003 Oct; 185(20): 6185–6191. doi: 10.1128/JB.185.20.6185-6191.2003
PMCID:
PMC225034
ArticlePDF–402K
8.
Hybridization of labeled RNA to DNA in agarose gels.
T M Shinnick, E Lund, O Smithies, F R Blattner
Nucleic Acids Res. 1975 Oct; 2(10): 1911–1929. doi: 10.1093/nar/2.10.1911
PMCID:
PMC343556
ArticlePDF–2.4M
9.
The tL structure within the leader region of Escherichia coli ribosomal RNA operons has post-transcriptional functions.
G Theissen, J Eberle, M Zacharias, L Tobias, R Wagner
Nucleic Acids Res. 1990 Jul 11; 18(13): 3893–3901. doi: 10.1093/nar/18.13.3893
PMCID:
PMC331091
ArticlePDF–1.8M
10.
Changes in the Concentrations of Guanosine 5′-Diphosphate 3′-Diphosphate and the Initiating Nucleoside Triphosphate Account for Inhibition of rRNA Transcription in Fructose-1,6-Diphosphate Aldolase (fda) Mutants
David A. Schneider, Richard L. Gourse
J Bacteriol. 2003 Oct; 185(20): 6192–6194. doi: 10.1128/JB.185.20.6192-6194.2003
PMCID:
PMC225048
ArticlePDF–76K
11.
Rates and Consequences of Recombination between rRNA Operons
Joel G. Hashimoto, Bradley S. Stevenson, Thomas M. Schmidt
J Bacteriol. 2003 Feb; 185(3): 966–972. doi: 10.1128/JB.185.3.966-972.2003
PMCID:
PMC142796
ArticlePDF–282K
12.
Changes in Ribosomal Activity of Escherichia coli Cells during Prolonged Culture in Sea Salts Medium
Dimitrios L. Kalpaxis, Panagiotis Karahalios, M. Papapetropoulou
J Bacteriol. 1998 Jun; 180(12): 3114–3119. doi: 10.1128/jb.180.12.3114-3119.1998
PMCID:
PMC107811
ArticlePDF–325K
13.
The conformation of 23S rRNA nucleotide A2058 determines its recognition by the ErmE methyltransferase.
B Vester, L H Hansen, S Douthwaite
RNA. 1995 Jul; 1(5): 501–509.
PMCID:
PMC1482423
ArticlePDF–2.5M
14.
A novel partial modification at C2501 in Escherichia coli 23S ribosomal RNA
THOMAS EMIL ANDERSEN, BO TORBEN PORSE, FINN KIRPEKAR
RNA. 2004 Jun; 10(6): 907–913. doi: 10.1261/rna.5259404
PMCID:
PMC1370582
ArticlePDF–117K
15.
Common and distinctive features of GNRA tetraloops based on a GUAA tetraloop structure at 1.4 Å resolution
CARL C. CORRELL, KERREN SWINGER
RNA. 2003 Mar; 9(3): 355–363. doi: 10.1261/rna.2147803
PMCID:
PMC1370402
ArticlePDF–663K
16.
Osmolytes stimulate the reconstitution of functional 50S ribosomes from in vitro transcripts of Escherichia coli 23S rRNA.
Katharina Semrad, Rachel Green
RNA. 2002 Apr; 8(4): 401–411. doi: 10.1017/s1355838202029722
PMCID:
PMC1370264
SummaryPDF–8.5M
17.
pH-dependent conformational flexibility within the ribosomal peptidyl transferase center.
G W Muth, L Chen, A B Kosek, S A Strobel
RNA. 2001 Oct; 7(10): 1403–1415.
PMCID:
PMC1370184
SummaryPDF–1.2M
18.
Initiation factor IF 2 binds to the alpha-sarcin loop and helix 89 of Escherichia coli 23S ribosomal RNA.
A La Teana, C O Gualerzi, A E Dahlberg
RNA. 2001 Aug; 7(8): 1173–1179. doi: 10.1017/s1355838201010366
PMCID:
PMC1370164
SummaryPDF–1.8M
19.
The GA motif: an RNA element common to bacterial antitermination systems, rRNA, and eukaryotic RNAs.
W C Winkler, F J Grundy, B A Murphy, T M Henkin
RNA. 2001 Aug; 7(8): 1165–1172. doi: 10.1017/s1355838201002370
PMCID:
PMC1370163
SummaryPDF–443K
20.
Puromycin-rRNA interaction sites at the peptidyl transferase center.
C Rodriguez-Fonseca, H Phan, K S Long, B T Porse, S V Kirillov, R Amils, R A Garrett
RNA. 2000 May; 6(5): 744–754. doi: 10.1017/s1355838200000091
PMCID:
PMC1369954
SummaryPDF–678K

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