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Items: 1 to 20 of 59

1.
A broad analysis of splicing regulation in yeast using a large library of synthetic introns
Dvir Schirman, Zohar Yakhini, Yitzhak Pilpel, Orna Dahan
PLoS Genet. 2021 Sep; 17(9): e1009805. Published online 2021 Sep 27. doi: 10.1371/journal.pgen.1009805
PMCID:
PMC8496845
ArticlePDF–2.7M
2.
Characterization of yeast U1 snRNP A protein: identification of the N-terminal RNA binding domain (RBD) binding site and evidence that the C-terminal RBD functions in splicing.
J Tang, M Rosbash
RNA. 1996 Oct; 2(10): 1058–1070.
PMCID:
PMC1369437
SummaryPDF–19M
3.
Domain Requirements and Genetic Interactions of the Mud1 Subunit of the Saccharomyces cerevisiae U1 snRNP
Radhika Agarwal, Beate Schwer, Stewart Shuman
G3 (Bethesda) 2019 Jan; 9(1): 145–151. Published online 2018 Nov 9. doi: 10.1534/g3.118.200781
PMCID:
PMC6325900
ArticlePDF–1.3M
4.
Multiple Myo4 motors enhance ASH1 mRNA transport in Saccharomyces cerevisiae
Sunglan Chung, Peter A. Takizawa
J Cell Biol. 2010 May 17; 189(4): 755–767. doi: 10.1083/jcb.200912011
PMCID:
PMC2872910
ArticlePDF–1.9M
5.
Mutational analyses of trimethylguanosine synthase (Tgs1) and Mud2: Proteins implicated in pre-mRNA splicing
Jonathan Chang, Beate Schwer, Stewart Shuman
RNA. 2010 May; 16(5): 1018–1031. doi: 10.1261/rna.2082610
PMCID:
PMC2856874
ArticlePDF–631K
6.
Nonsense-mediated mRNA decay mutes the splicing defects of spliceosome component mutations
Tadashi Kawashima, Matteo Pellegrini, Guillaume F. Chanfreau
RNA. 2009 Dec; 15(12): 2236–2247. doi: 10.1261/rna.1736809
PMCID:
PMC2779665
ArticlePDF–1.3M
7.
Structure-function analysis of the Yhc1 subunit of yeast U1 snRNP and genetic interactions of Yhc1 with Mud2, Nam8, Mud1, Tgs1, U1 snRNA, SmD3 and Prp28
Beate Schwer, Stewart Shuman
Nucleic Acids Res. 2014 Apr; 42(7): 4697–4711. Published online 2014 Jan 31. doi: 10.1093/nar/gku097
PMCID:
PMC3985668
ArticlePDF–10M
8.
Widespread Use of Non-productive Alternative Splice Sites in Saccharomyces cerevisiae
Tadashi Kawashima, Stephen Douglass, Jason Gabunilas, Matteo Pellegrini, Guillaume F. Chanfreau
PLoS Genet. 2014 Apr; 10(4): e1004249. Published online 2014 Apr 10. doi: 10.1371/journal.pgen.1004249
PMCID:
PMC3983031
ArticlePDF–3.0M
9.
A single SR-like protein, Npl3, promotes pre-mRNA splicing in budding yeast
Tracy L. Kress, Nevan J. Krogan, Christine Guthrie
Mol Cell. Author manuscript; available in PMC 2009 Dec 5.
Published in final edited form as: Mol Cell. 2008 Dec 5; 32(5): 727–734. doi: 10.1016/j.molcel.2008.11.013
PMCID:
PMC2677966
ArticlePDF–1.6M
10.
Structure–function analysis and genetic interactions of the Luc7 subunit of the Saccharomyces cerevisiae U1 snRNP
Radhika Agarwal, Beate Schwer, Stewart Shuman
RNA. 2016 Sep; 22(9): 1302–1310. doi: 10.1261/rna.056911.116
PMCID:
PMC4986886
ArticlePDF–1.0M
11.
Structure–function analysis and genetic interactions of the Yhc1, SmD3, SmB, and Snp1 subunits of yeast U1 snRNP and genetic interactions of SmD3 with U2 snRNP subunit Lea1
Beate Schwer, Stewart Shuman
RNA. 2015 Jun; 21(6): 1173–1186. doi: 10.1261/rna.050583.115
PMCID:
PMC4436669
ArticlePDF–885K
12.
Structure-function analysis of the 5′ end of yeast U1 snRNA highlights genetic interactions with the Msl5•Mud2 branchpoint-binding complex and other spliceosome assembly factors
Beate Schwer, Jonathan Chang, Stewart Shuman
Nucleic Acids Res. 2013 Aug; 41(15): 7485–7500. Published online 2013 Jun 10. doi: 10.1093/nar/gkt490
PMCID:
PMC3753624
ArticlePDF–7.4M
13.
Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry
Gitte Neubauer, Alexander Gottschalk, Patrizia Fabrizio, Bertrand Séraphin, Reinhard Lührmann, Matthias Mann
Proc Natl Acad Sci U S A. 1997 Jan 21; 94(2): 385–390. doi: 10.1073/pnas.94.2.385
PMCID:
PMC19520
ArticlePDF–502K
14.
Genetic interactions of hypomorphic mutations in the m7G cap-binding pocket of yeast nuclear cap binding complex: An essential role for Cbc2 in meiosis via splicing of MER3 pre-mRNA
Zhicheng R. Qiu, Lidia Chico, Jonathan Chang, Stewart Shuman, Beate Schwer
RNA. 2012 Nov; 18(11): 1996–2011. doi: 10.1261/rna.033746.112
PMCID:
PMC3479390
ArticlePDF–1.0M
15.
A unified mechanism for intron and exon definition and back-splicing
Xueni Li, Shiheng Liu, Lingdi Zhang, Aaron Issaian, Ryan C. Hill, Sara Espinosa, Shasha Shi, Yanxiang Cui, Kalli Kappel, Rhiju Das, Kirk C. Hansen, Z. Hong Zhou, Rui Zhao
Nature. Author manuscript; available in PMC 2020 Mar 4.
Published in final edited form as: Nature. 2019 Sep; 573(7774): 375–380. Published online 2019 Sep 4. doi: 10.1038/s41586-019-1523-6
PMCID:
PMC6939996
ArticlePDF–4.8M
16.
Structure–function analysis and genetic interactions of the SmG, SmE, and SmF subunits of the yeast Sm protein ring
Beate Schwer, Joshua Kruchten, Stewart Shuman
RNA. 2016 Sep; 22(9): 1320–1328. doi: 10.1261/rna.057448.116
PMCID:
PMC4986888
ArticlePDF–1.2M
17.
Luc7p, a novel yeast U1 snRNP protein with a role in 5′ splice site recognition
Puri Fortes, Daniel Bilbao-Cortés, Maarten Fornerod, Guillaume Rigaut, Wendy Raymond, Bertrand Séraphin, Iain W. Mattaj
Genes Dev. 1999 Sep 15; 13(18): 2425–2438. doi: 10.1101/gad.13.18.2425
PMCID:
PMC317023
ArticlePDF–1.4M
18.
The conserved AU dinucleotide at the 5′ end of nascent U1 snRNA is optimized for the interaction with nuclear cap-binding-complex
Chung-Shu Yeh, Shang-Lin Chang, Jui­-Hui Chen, Hsuan-Kai Wang, Yue-Chang Chou, Chun-Hsiung Wang, Shih-Hsin Huang, Amy Larson, Jeffrey A Pleiss, Wei-Hau Chang, Tien-Hsien Chang
Nucleic Acids Res. 2017 Sep 19; 45(16): 9679–9693. Published online 2017 Jul 13. doi: 10.1093/nar/gkx608
PMCID:
PMC5766165
ArticlePDF–3.0M
19.
Cotranscriptional spliceosome assembly and splicing are independent of the Prp40p WW domain
Janina Görnemann, Charlotte Barrandon, Katja Hujer, Berthold Rutz, Guillaume Rigaut, Kimberly M. Kotovic, Céline Faux, Karla M. Neugebauer, Bertrand Séraphin
RNA. 2011 Dec; 17(12): 2119–2129. doi: 10.1261/rna.02646811
PMCID:
PMC3222125
ArticlePDF–1.2M
20.
The histone variant H2A.Z promotes efficient cotranscriptional splicing in S. cerevisiae
Lauren T. Neves, Stephen Douglass, Roberto Spreafico, Srivats Venkataramanan, Tracy L. Kress, Tracy L. Johnson
Genes Dev. 2017 Apr 1; 31(7): 702–717. doi: 10.1101/gad.295188.116
PMCID:
PMC5411710
ArticlePDF–1.3M

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