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Select item 46401841.

Lactobacilli modulate epithelial cytoprotection through the Nrf2 pathway

Rheinallt M. Jones, Chirayu Desai, Trevor M. Darby, Liping Luo, Alexandra A. Wolfarth, Christopher D. Scharer, Courtney S. Ardita, Erin S. Keebaugh, Andrew S. Neish

Cell Rep. Author manuscript; available in PMC 2016 Aug 25.

Published in final edited form as: Cell Rep. 2015 Aug 25; 12(8): 1217–1225. Published online 2015 Aug 13. doi: 10.1016/j.celrep.2015.07.042

PMCID:: PMC4640184

Abstract Article PDF–835K

Select item 74632942.

Polymorphism and Divergence of Novel Gene Expression Patterns in Drosophila melanogaster

Julie M. Cridland, Alex C. Majane, Hayley K. Sheehy, David J. Begun

Genetics. 2020 Sep; 216(1): 79–93. Published online 2020 Jul 31. doi: 10.1534/genetics.120.303515

PMCID:: PMC7463294

Abstract Article PDF–1011K

Select item 39862213.

Drosophila Microbiota Modulates Host Metabolic Gene Expression via IMD/NF-κB Signaling

Berra Erkosar Combe, Arnaud Defaye, Noémie Bozonnet, Denis Puthier, Julien Royet, François Leulier

PLoS One. 2014; 9(4): e94729. Published online 2014 Apr 14. doi: 10.1371/journal.pone.0094729

Correction in:: PLoS One. 2014; 9(7): e104120.

PMCID:: PMC3986221

Abstract Article PDF–1010K

Select item 40364714.

Phenotypic rescue of a Drosophila model of mitochondrial ANT1 disease

Suvi Vartiainen, Shanjun Chen, Jack George, Tea Tuomela, Kaisa R. Luoto, Kevin M. C. O’Dell, Howard T. Jacobs

Dis Model Mech. 2014 Jun; 7(6): 635–648. Published online 2014 May 8. doi: 10.1242/dmm.016527

PMCID:: PMC4036471

Abstract Article

Select item 67246045.

Drosophila p53 directs nonapoptotic programs in postmitotic tissue

Paula Kurtz, Amanda E. Jones, Bhavana Tiwari, Nichole Link, Annika Wylie, Charles Tracy, Helmut Krämer, John M. Abrams

Mol Biol Cell. 2019 May 15; 30(11): 1339–1351. doi: 10.1091/mbc.E18-12-0791

PMCID:: PMC6724604

Abstract Article PDF–1.2M

Select item 5454946.

A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome

Mark Yandell, Adina M. Bailey, Sima Misra, ShengQiang Shu, Colin Wiel, Martha Evans-Holm, Susan E. Celniker, Gerald M. Rubin

Proc Natl Acad Sci U S A. 2005 Feb 1; 102(5): 1566–1571. Published online 2005 Jan 24. doi: 10.1073/pnas.0409421102

PMCID:: PMC545494

Abstract Article PDF–332K

Select item 65874617.

The gut microbiome participates in transgenerational inheritance of low‐temperature responses in Drosophila melanogaster

Aman Zare, Anna‐Mia Johansson, Edvin Karlsson, Nicolas Delhomme, Per Stenberg

FEBS Lett. 2018 Dec; 592(24): 4078–4086. Published online 2018 Nov 15. doi: 10.1002/1873-3468.13278

PMCID:: PMC6587461

Abstract Article PDF–479K

Select item 47881168.

Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet

Ibrahim Ömer Çiçek, Samir Karaca, Marko Brankatschk, Suzanne Eaton, Henning Urlaub, Halyna R. Shcherbata

Genetics. 2016 Mar; 202(3): 1167–1183. Published online 2016 Jan 22. doi: 10.1534/genetics.115.185371

PMCID:: PMC4788116

Abstract Article PDF–4.7M

Select item 49280479.

Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome

Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair

Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999

PMCID:: PMC4928047

Abstract Article PDF–3.1M

Select item 353067710.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Abstract Article PDF–1.5M

Select item 570780511.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900212.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 435288713.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 282505314.

Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin

Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker

Science. Author manuscript; available in PMC 2010 Feb 19.

Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816

PMCID:: PMC2825053

Abstract Article PDF–858K

Select item 281928015.

The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin

Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen

Science. Author manuscript; available in PMC 2010 Feb 10.

Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815

Correction in:: volume 317 on page 1325

PMCID:: PMC2819280

Abstract Article PDF–1.3M

Select item 118564816.

Combined Evidence Annotation of Transposable Elements in Genome Sequences

Hadi Quesneville, Casey M Bergman, Olivier Andrieu, Delphine Autard, Danielle Nouaud, Michael Ashburner, Dominique Anxolabehere

PLoS Comput Biol. 2005 Jul; 1(2): e22. Published online 2005 Jul 29. doi: 10.1371/journal.pcbi.0010022

PMCID:: PMC1185648

Abstract Article PDF–273K

Select item 15118717.

Heterochromatic sequences in a Drosophila whole-genome shotgun assembly

Roger A Hoskins, Christopher D Smith, Joseph W Carlson, A Bernardo Carvalho, Aaron Halpern, Joshua S Kaminker, Cameron Kennedy, Chris J Mungall, Beth A Sullivan, Granger G Sutton, Jiro C Yasuhara, Barbara T Wakimoto, Eugene W Myers, Susan E Celniker, Gerald M Rubin, Gary H Karpen

Genome Biol. 2002; 3(12): research0085.1–85.16. Published online 2002 Dec 31. doi: 10.1186/gb-2002-3-12-research0085

PMCID:: PMC151187

Abstract Article PDF–280K

Select item 15118618.

The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective

Joshua S Kaminker, Casey M Bergman, Brent Kronmiller, Joseph Carlson, Robert Svirskas, Sandeep Patel, Erwin Frise, David A Wheeler, Suzanna E Lewis, Gerald M Rubin, Michael Ashburner, Susan E Celniker

Genome Biol. 2002; 3(12): research0084.1–84.2. Published online 2002 Dec 23. doi: 10.1186/gb-2002-3-12-research0084

PMCID:: PMC151186

Abstract Article PDF–330K

Select item 452833019.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 15118120.

Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence

Susan E Celniker, David A Wheeler, Brent Kronmiller, Joseph W Carlson, Aaron Halpern, Sandeep Patel, Mark Adams, Mark Champe, Shannon P Dugan, Erwin Frise, Ann Hodgson, Reed A George, Roger A Hoskins, Todd Laverty, Donna M Muzny, Catherine R Nelson, Joanne M Pacleb, Soo Park, Barret D Pfeiffer, Stephen Richards, Erica J Sodergren, Robert Svirskas, Paul E Tabor, Kenneth Wan, Mark Stapleton, Granger G Sutton, Craig Venter, George Weinstock, Steven E Scherer, Eugene W Myers, Richard A Gibbs, Gerald M Rubin

Genome Biol. 2002; 3(12): research0079.1–79.14. Published online 2002 Dec 23. doi: 10.1186/gb-2002-3-12-research0079

PMCID:: PMC151181

Abstract Article PDF–171K

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