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Select item 56570481.

McEnhancer: predicting gene expression via semi-supervised assignment of enhancers to target genes

Dina Hafez, Aslihan Karabacak, Sabrina Krueger, Yih-Chii Hwang, Li-San Wang, Robert P. Zinzen, Uwe Ohler

Genome Biol. 2017; 18: 199. Published online 2017 Oct 26. doi: 10.1186/s13059-017-1316-x

PMCID:: PMC5657048

Abstract Article PDF–2.7M

Select item 19781642.

A Sensory Feedback Circuit Coordinates Muscle Activity in Drosophila

Cynthia L. Hughes, John B. Thomas

Mol Cell Neurosci. Author manuscript; available in PMC 2007 Sep 17.

Published in final edited form as: Mol Cell Neurosci. 2007 Jun; 35(2): 383–396. Published online 2007 Apr 6. doi: 10.1016/j.mcn.2007.04.001

PMCID:: PMC1978164

Abstract Article PDF–3.3M

Select item 55784923.

The WAGR syndrome gene PRRG4 is a functional homologue of the commissureless axon guidance gene

Elizabeth D. Justice, Sarah J. Barnum, Thomas Kidd

PLoS Genet. 2017 Aug; 13(8): e1006865. Published online 2017 Aug 31. doi: 10.1371/journal.pgen.1006865

Correction in:: PLoS Genet. 2017 Oct; 13(10): e1007061.

PMCID:: PMC5578492

Abstract Article PDF–26M

Select item 32563554.

Drosophila glutamate receptor mRNA expression and mRNP particles

Subhashree Ganesan, Julie E Karr, David E Featherstone

RNA Biol. 2011 Sep-Oct; 8(5): 771–781. Published online 2011 Sep 1. doi: 10.4161/rna.8.6.16014

PMCID:: PMC3256355

Abstract Article PDF–5.8M

Select item 107772955.

The central regulatory circuit in the gene network controlling the morphogenesis of Drosophila mechanoreceptors: an in silico analysis

T.A. Bukharina, V.P. Golubyatnikov, D.P. Furman

Vavilovskii Zhurnal Genet Selektsii. 2023 Dec; 27(7): 746–754. doi: 10.18699/VJGB-23-87

PMCID:: PMC10777295

Abstract Article PDF–638K

Select item 31703696.

A Gateway MultiSite Recombination Cloning Toolkit

Lena K. Petersen, R. Steven Stowers

PLoS One. 2011; 6(9): e24531. Published online 2011 Sep 9. doi: 10.1371/journal.pone.0024531

PMCID:: PMC3170369

Abstract Article PDF–2.0M

Select item 30739737.

Microarray Analysis Uncovers a Role for Tip60 in Nervous System Function and General Metabolism

Meridith Lorbeck, Keerthy Pirooznia, Jessica Sarthi, Xianmin Zhu, Felice Elefant

PLoS One. 2011; 6(4): e18412. Published online 2011 Apr 11. doi: 10.1371/journal.pone.0018412

PMCID:: PMC3073973

Abstract Article PDF–1.5M

Select item 34757988.

ELAV mediates 3′ UTR extension in the Drosophila nervous system

Valérie Hilgers, Sandra B. Lemke, Michael Levine

Genes Dev. 2012 Oct 15; 26(20): 2259–2264. doi: 10.1101/gad.199653.112

PMCID:: PMC3475798

Abstract Article PDF–919K

Select item 44822459.

Screening of suppressors of bax-induced cell death identifies glycerophosphate oxidase-1 as a mediator of debcl-induced apoptosis in Drosophila

Jessie Colin, Julie Garibal, Amandine Clavier, Sébastien Szuplewski, Yanick Risler, Cécile Milet, Sébastien Gaumer, Isabelle Guénal, Bernard Mignotte

Genes Cancer. 2015 May; 6(5-6): 241–253. doi: 10.18632/genesandcancer.68

PMCID:: PMC4482245

Abstract Article PDF–1.7M

Select item 146257310.

The Drosophila roX1 RNA gene can overcome silent chromatin by recruiting the male-specific lethal dosage compensation complex.

Richard L Kelley, Mitzi I Kuroda

Genetics. 2003 Jun; 164(2): 565–574. doi: 10.1093/genetics/164.2.565

PMCID:: PMC1462573

Summary PDF–456K

Select item 3842611.

Modular cis-regulatory organization of developmentally expressed genes: two genes transcribed territorially in the sea urchin embryo, and additional examples.

C V Kirchhamer, C H Yuh, E H Davidson

Proc Natl Acad Sci U S A. 1996 Sep 3; 93(18): 9322–9328. doi: 10.1073/pnas.93.18.9322

PMCID:: PMC38426

Summary Page Browse PDF–1.8M

Select item 1048270012.

SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks

Carmen Bravo González-Blas, Seppe De Winter, Gert Hulselmans, Nikolai Hecker, Irina Matetovici, Valerie Christiaens, Suresh Poovathingal, Jasper Wouters, Sara Aibar, Stein Aerts

Nat Methods. 2023; 20(9): 1355–1367. Published online 2023 Jul 13. doi: 10.1038/s41592-023-01938-4

PMCID:: PMC10482700

Abstract Article PDF–27M

Select item 454096413.

Identification of Lineage-Specific Cis-Regulatory Modules Associated with Variation in Transcription Factor Binding and Chromatin Activity Using Ornstein–Uhlenbeck Models

Marina Naval-Sánchez, Delphine Potier, Gert Hulselmans, Valerie Christiaens, Stein Aerts

Mol Biol Evol. 2015 Sep; 32(9): 2441–2455. Published online 2015 May 4. doi: 10.1093/molbev/msv107

PMCID:: PMC4540964

Abstract Article PDF–2.8M

Select item 910236114.

ASC proneural factors are necessary for chromatin remodeling during neuroectodermal to neuroblast fate transition to ensure the timely initiation of the neural stem cell program

Vasiliki Theodorou, Aikaterini Stefanaki, Minas Drakos, Dafne Triantafyllou, Christos Delidakis

BMC Biol. 2022; 20: 107. Published online 2022 May 13. doi: 10.1186/s12915-022-01300-8

PMCID:: PMC9102361

Abstract Article PDF–4.9M

Select item 353068515.

Comparative motif discovery combined with comparative transcriptomics yields accurate targetome and enhancer predictions

Marina Naval-Sánchez, Delphine Potier, Lotte Haagen, Máximo Sánchez, Sebastian Munck, Bram Van de Sande, Fernando Casares, Valerie Christiaens, Stein Aerts

Genome Res. 2013 Jan; 23(1): 74–88. doi: 10.1101/gr.140426.112

PMCID:: PMC3530685

Abstract Article PDF–2.3M

Select item 532651616.

High-protein paternal diet confers an advantage to sons in sperm competition

Felix Zajitschek, Susanne Zajitschek, Mollie Manier

Biol Lett. 2017 Feb; 13(2): 20160914. doi: 10.1098/rsbl.2016.0914

Correction in:: Biol Lett. 2017 Jul; 13(7): 20170297.

PMCID:: PMC5326516

Abstract Article PDF–497K

Select item 264628017.

Selective maintenance of Drosophila tandemly arranged duplicated genes during evolution

Carlos Quijano, Pavel Tomancak, Jesus Lopez-Marti, Mikita Suyama, Peer Bork, Marco Milan, David Torrents, Miguel Manzanares

Genome Biol. 2008; 9(12): R176. Published online 2008 Dec 16. doi: 10.1186/gb-2008-9-12-r176

PMCID:: PMC2646280

Abstract Article PDF–550K

Select item 117170518.

The mesoderm determinant snail collaborates with related zinc-finger proteins to control Drosophila neurogenesis.

S I Ashraf, X Hu, J Roote, Y T Ip

EMBO J. 1999 Nov 15; 18(22): 6426–6438. doi: 10.1093/emboj/18.22.6426

PMCID:: PMC1171705

Summary PDF–710K

Select item 309543119.

Functional analysis of conserved sequences within a temporally restricted neural precursor cell enhancer

Alexander Kuzin, Mukta Kundu, Thomas Brody, Ward F. Odenwald

Mech Dev. Author manuscript; available in PMC 2012 Mar 1.

Published in final edited form as: Mech Dev. 2011 MAR-APR; 128(3-4): 165–177. Published online 2011 Feb 16. doi: 10.1016/j.mod.2011.02.001

PMCID:: PMC3095431

Abstract Article PDF–1.1M

Select item 146081620.

The genetic architecture of selection response. Inferences from fine-scale mapping of bristle number quantitative trait loci in Drosophila melanogaster.

S V Nuzhdin, C L Dilda, T F Mackay

Genetics. 1999 Nov; 153(3): 1317–1331. doi: 10.1093/genetics/153.3.1317

PMCID:: PMC1460816

Summary PDF–168K

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