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Select item 74939821.

An improvement of ComiR algorithm for microRNA target prediction by exploiting coding region sequences of mRNAs

Giorgio Bertolazzi, Panayiotis V. Benos, Michele Tumminello, Claudia Coronnello

BMC Bioinformatics. 2020; 21(Suppl 8): 201. Published online 2020 Sep 16. doi: 10.1186/s12859-020-3519-5

PMCID:: PMC7493982

Abstract Article PDF–1.2M

Select item 45868622.

Biochemical isolation of Argonaute protein complexes by Ago-APP

Judith Hauptmann, Daniel Schraivogel, Astrid Bruckmann, Sudhir Manickavel, Leonhard Jakob, Norbert Eichner, Janina Pfaff, Marc Urban, Stefanie Sprunck, Markus Hafner, Thomas Tuschl, Rainer Deutzmann, Gunter Meister

Proc Natl Acad Sci U S A. 2015 Sep 22; 112(38): 11841–11845. Published online 2015 Sep 8. doi: 10.1073/pnas.1506116112

PMCID:: PMC4586862

Abstract Article PDF–1.1M

Select item 31791073.

Testing hypotheses on the rate of molecular evolution in relation to gene expression using microRNAs

Yang Shen, Yang Lv, Lei Huang, Wensheng Liu, Ming Wen, Tian Tang, Rui Zhang, Eric Hungate, Suhua Shi, Chung-I Wu

Proc Natl Acad Sci U S A. 2011 Sep 20; 108(38): 15942–15947. Published online 2011 Sep 12. doi: 10.1073/pnas.1110098108

PMCID:: PMC3179107

Abstract Article PDF–250K

Select item 31664544.

Multilayer checkpoints for microRNA authenticity during RISC assembly

Tomoko Kawamata, Mayuko Yoda, Yukihide Tomari

EMBO Rep. 2011 Sep; 12(9): 944–949. Published online 2011 Jul 8. doi: 10.1038/embor.2011.128

PMCID:: PMC3166454

Abstract Article PDF–763K

Select item 45726335.

Age-driven modulation of tRNA-derived fragments in Drosophila and their potential targets

Spyros Karaiskos, Ammar S. Naqvi, Karl E. Swanson, Andrey Grigoriev

Biol Direct. 2015; 10: 51. Published online 2015 Sep 16. doi: 10.1186/s13062-015-0081-6

PMCID:: PMC4572633

Abstract Article PDF–2.1M

Select item 37820876.

Degradation of Host MicroRNAs by Poxvirus Poly(A) Polymerase Reveals Terminal RNA Methylation as a Protective Antiviral Mechanism

Simone Backes, Jillian S. Shapiro, Leah R. Sabin, Alissa M. Pham, Ismarc Reyes, Bernard Moss, Sara Cherry, Benjamin R. tenOever

Cell Host Microbe. Author manuscript; available in PMC 2013 Sep 24.

Published in final edited form as: Cell Host Microbe. 2012 Aug 16; 12(2): 200–210. doi: 10.1016/j.chom.2012.05.019

PMCID:: PMC3782087

Abstract Article PDF–1.3M

Select item 35720437.

Profiling and Identification of Small rDNA-Derived RNAs and Their Potential Biological Functions

Haibin Wei, Ben Zhou, Fang Zhang, Yanyang Tu, Yanan Hu, Baoguo Zhang, Qiwei Zhai

PLoS One. 2013; 8(2): e56842. Published online 2013 Feb 13. doi: 10.1371/journal.pone.0056842

PMCID:: PMC3572043

Abstract Article PDF–1000K

Select item 35430838.

Rapid and specific purification of Argonaute-small RNA complexes from crude cell lysates

C. Fabián Flores-Jasso, William E. Salomon, Phillip D. Zamore

RNA. 2013 Feb; 19(2): 271–279. doi: 10.1261/rna.036921.112

PMCID:: PMC3543083

Abstract Article PDF–819K

Select item 93440239.

Optimized protocols for RNA-induced silencing complex assembly and cleavage in cultured Drosophila cells

Yajie Gao, Yuanxiang Zhu, Qinmiao Sun, Dahua Chen

STAR Protoc. 2022 Sep 16; 3(3): 101596. Published online 2022 Jul 31. doi: 10.1016/j.xpro.2022.101596

PMCID:: PMC9344023

Abstract Article PDF–3.3M

Select item 772015310.

Structure-function analysis of microRNA 3′-end trimming by Nibbler

Wei Xie, Ivica Sowemimo, Rippei Hayashi, Juncheng Wang, Thomas R. Burkard, Julius Brennecke, Stefan L. Ameres, Dinshaw J. Patel

Proc Natl Acad Sci U S A. 2020 Dec 1; 117(48): 30370–30379. Published online 2020 Nov 16. doi: 10.1073/pnas.2018156117

PMCID:: PMC7720153

Abstract Article PDF–1.8M

Select item 642026511.

Environmentally-induced epigenetic conversion of a piRNA cluster

Karine Casier, Valérie Delmarre, Nathalie Gueguen, Catherine Hermant, Elise Viodé, Chantal Vaury, Stéphane Ronsseray, Emilie Brasset, Laure Teysset, Antoine Boivin

eLife. 2019; 8: e39842. Published online 2019 Mar 15. doi: 10.7554/eLife.39842

PMCID:: PMC6420265

Abstract Article PDF–1.1M

Select item 611414412.

The hpRNA/RNAi pathway is essential to resolve intragenomic conflict in the Drosophila male germline

Ching-Jung Lin, Fuqu Hu, Raphaelle Dubruille, Jeffrey Vedanayagam, Jiayu Wen, Peter Smibert, Benjamin Loppin, Eric C. Lai

Dev Cell. Author manuscript; available in PMC 2019 Aug 6.

Published in final edited form as: Dev Cell. 2018 Aug 6; 46(3): 316–326.e5. doi: 10.1016/j.devcel.2018.07.004

PMCID:: PMC6114144

Abstract Article PDF–2.8M

Select item 437896113.

Adenylation of maternally inherited microRNAs by Wispy

Mihye Lee, Yeon Choi, Kijun Kim, Hua Jin, Jaechul Lim, Tuan Anh Nguyen, Jihye Yang, Minsun Jeong, Antonio J. Giraldez, Hui Yang, Dinshaw J. Patel, V. Narry Kim

Mol Cell. Author manuscript; available in PMC 2015 Sep 4.

Published in final edited form as: Mol Cell. 2014 Dec 4; 56(5): 696–707. Published online 2014 Nov 13. doi: 10.1016/j.molcel.2014.10.011

PMCID:: PMC4378961

Abstract Article PDF–1.2M

Select item 303866914.

Excess protein synthesis in Drosophila Fragile X mutants impairs long-term memory

François V. Bolduc, Kimberly Bell, Hilary Cox, Kendal Broadie, Tim Tully

Nat Neurosci. Author manuscript; available in PMC 2011 Feb 14.

Published in final edited form as: Nat Neurosci. 2008 Oct; 11(10): 1143–1145. Published online 2008 Sep 7. doi: 10.1038/nn.2175

PMCID:: PMC3038669

Abstract Article PDF–828K

Select item 296523215.

The GW/WG repeats of Drosophila GW182 function as effector motifs for miRNA-mediated repression

Marina Chekulaeva, Roy Parker, Witold Filipowicz

Nucleic Acids Res. 2010 Oct; 38(19): 6673–6683. Published online 2010 Jun 8. doi: 10.1093/nar/gkq501

PMCID:: PMC2965232

Abstract Article PDF–1.0M

Select item 283427716.

Allosteric regulation of Argonaute proteins by miRNAs

Sergej Djuranovic, Michelle Kim Zinchenko, Junho K. Hur, Ali Nahvi, Julie L. Brunelle, Elizabeth J. Rogers, Rachel Green

Nat Struct Mol Biol. Author manuscript; available in PMC 2010 Mar 8.

Published in final edited form as: Nat Struct Mol Biol. 2010 Feb; 17(2): 144–150. Published online 2010 Jan 10. doi: 10.1038/nsmb.1736

PMCID:: PMC2834277

Abstract Article PDF–2.3M

Select item 1045171317.

MicroRNA miR-263b-5p Regulates Developmental Growth and Cell Association by Suppressing Laminin A in Drosophila

Chae Jeong Kim, Hyun Ho Kim, Hee Kyung Kim, Sojeong Lee, Daegyu Jang, Chanhyeok Kim, Do-Hwan Lim

Biology (Basel) 2023 Aug; 12(8): 1096. Published online 2023 Aug 7. doi: 10.3390/biology12081096

PMCID:: PMC10451713

Abstract Article PDF–2.6M

Select item 795754718.

Tissue-Specific Knockdown of Genes of the Argonaute Family Modulates Lifespan and Radioresistance in Drosophila melanogaster

Ekaterina Proshkina, Elena Yushkova, Liubov Koval, Nadezhda Zemskaya, Evgeniya Shchegoleva, Ilya Solovev, Daria Yakovleva, Natalya Pakshina, Natalia Ulyasheva, Mikhail Shaposhnikov, Alexey Moskalev

Int J Mol Sci. 2021 Mar; 22(5): 2396. Published online 2021 Feb 27. doi: 10.3390/ijms22052396