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Items: 1 to 20 of 28

1.
DmGEN, a novel RAD2 family endo-exonuclease from Drosophila melanogaster
Gen Ishikawa, Yoshihiro Kanai, Kei-ichi Takata, Ryo Takeuchi, Kaori Shimanouchi, Tatsushi Ruike, Tomoyuki Furukawa, Seisuke Kimura, Kengo Sakaguchi
Nucleic Acids Res. 2004; 32(21): 6251–6259. Published online 2004 Dec 1. doi: 10.1093/nar/gkh962
PMCID:
PMC535671
AbstractArticlePDF–435K
2.
Timely double-strand break repair and pathway choice in pericentromeric heterochromatin depend on the histone demethylase dKDM4A
Aniek Janssen, Serafin U. Colmenares, Timothy Lee, Gary H. Karpen
Genes Dev. 2019 Jan 1; 33(1-2): 103–115. doi: 10.1101/gad.317537.118
PMCID:
PMC6317320
AbstractArticlePDF–2.1M
3.
Double-Strand Breaks in Heterochromatin Move Outside of a Dynamic HP1a Domain to Complete Recombinational Repair
Irene Chiolo, Aki Minoda, Serafin U. Colmenares, Aris Polyzos, Sylvain V. Costes, Gary H. Karpen
Cell. Author manuscript; available in PMC 2012 Aug 12.
Published in final edited form as: Cell. 2011 Mar 4; 144(5): 732–744. Published online 2011 Feb 25. doi: 10.1016/j.cell.2011.02.012
PMCID:
PMC3417143
AbstractArticlePDF–3.1M
4.
And yet, it moves: nuclear and chromatin dynamics of a heterochromatic double-strand break
P. Christopher Caridi, Laetitia Delabaere, Grzegorz Zapotoczny, Irene Chiolo
Philos Trans R Soc Lond B Biol Sci. 2017 Oct 5; 372(1731): 20160291. Published online 2017 Aug 28. doi: 10.1098/rstb.2016.0291
PMCID:
PMC5577469
AbstractArticlePDF–913K
5.
DNA Repair in Drosophila: Mutagens, Models, and Missing Genes
Jeff Sekelsky
Genetics. 2017 Feb; 205(2): 471–490. Published online 2017 Jan 31. doi: 10.1534/genetics.116.186759
PMCID:
PMC5289830
AbstractArticlePDF–891K
6.
Unbiased Boolean analysis of public gene expression data for cell cycle gene identification
Sarah A. Dabydeen, Arshad Desai, Debashis Sahoo
Mol Biol Cell. 2019 Jul 1; 30(14): 1770–1779. doi: 10.1091/mbc.E19-01-0013
PMCID:
PMC6727750
AbstractArticlePDF–5.4M
7.
The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster
Nicolas Svetec, Julie M. Cridland, Li Zhao, David J. Begun
PLoS Genet. 2016 Mar; 12(3): e1005869. Published online 2016 Mar 7. doi: 10.1371/journal.pgen.1005869
PMCID:
PMC4780809
AbstractArticlePDF–543K
8.
The BEAF insulator regulates genes involved in cell polarity and neoplastic growth
B.V. Gurudatta, Edward Ramos, Victor G Corces
Dev Biol. Author manuscript; available in PMC 2013 Sep 1.
Published in final edited form as: Dev Biol. 2012 Sep 1; 369(1): 124–132. Published online 2012 Jun 26. doi: 10.1016/j.ydbio.2012.06.013
PMCID:
PMC3572785
AbstractArticlePDF–4.1M
9.
A Genetic Screen and Transcript Profiling Reveal a Shared Regulatory Program for Drosophila Linker Histone H1 and Chromatin Remodeler CHD1
Harsh Kavi, Xingwu Lu, Na Xu, Boris A. Bartholdy, Elena Vershilova, Arthur I. Skoultchi, Dmitry V. Fyodorov
G3 (Bethesda) 2015 Apr; 5(4): 677–687. Published online 2015 Jan 27. doi: 10.1534/g3.115.016709
PMCID:
PMC4390582
AbstractArticlePDF–1.3M
10.
mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster
Gildas Lepennetier, Francesco Catania
G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231
PMCID:
PMC4889658
AbstractArticlePDF–1.5M
11.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
12.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
13.
A global in vivo Drosophila RNAi screen identifies NOT3 as a conserved regulator of heart function
G. Gregory Neely, Keiji Kuba, Anthony Cammarato, Kazuya Isobe, Sabine Amann, Liyong Zhang, Mitsushige Murata, Lisa Elmén, Vaijayanti Gupta, Suchir Arora, Rinku Sarangi, Debasis Dan, Susumu Fujisawa, Takako Usami, Cui-ping Xia, Alex C. Keene, Nakissa N. Alayari, Hiroyuki Yamakawa, Ulrich Elling, Christian Berger, Maria Novatchkova, Rubina Koglgruber, Keiichi Fukuda, Hiroshi Nishina, Mitsuaki Isobe, J. Andrew Pospisilik, Yumiko Imai, Arne Pfeufer, Andrew A Hicks, Peter P. Pramstaller, Sai Subramaniam, Akinori Kimura, Karen Ocorr, Rolf Bodmer, Josef M. Penninger
Cell. Author manuscript; available in PMC 2011 Apr 2.
Published in final edited form as: Cell. 2010 Apr 2; 141(1): 142–153. doi: 10.1016/j.cell.2010.02.023
PMCID:
PMC2855221
AbstractArticlePDF–5.3M
14.
A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionary-conserved pain gene
G. Gregory Neely, Andreas Hess, Michael Costigan, Alex C. Keene, Spyros Goulas, Michiel Langeslag, Robert S Griffin, Inna Belfer, Feng Dai, Shad Smith, Luda Diatchenko, Vaijayanti Gupta, Cui-ping Xia, Sabina Amann, Silke Kreitz, Cornelia Heindl-Erdmann, Susanne Wolz, Cindy V. Ly, Suchir Arora, Rinku Sarangi, Debasis Dan, Maria Novatchkova, Mark Rosenzweig, Dustin Gibson, Darwin Truong, Daniel Schramek, Tamara Zoranovic, Shane J. F. Cronin, Belinda Angjeli, Kay Brune, Georg Dietzl, William Maixner, Arabella Meixner, Winston Thomas, J. Andrew Pospisilik, Mattias Alenius, Michaela Kress, Sai Subramaniam, Paul A. Garrity, Hugo J. Bellen, Clifford J. Woolf, Josef M. Penninger
Cell. Author manuscript; available in PMC 2011 Nov 12.
Published in final edited form as: Cell. 2010 Nov 12; 143(4): 628–638. doi: 10.1016/j.cell.2010.09.047
PMCID:
PMC3040441
AbstractArticlePDF–2.0M
15.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
16.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
17.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
18.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
19.
Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin
Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker
Science. Author manuscript; available in PMC 2010 Feb 19.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816
PMCID:
PMC2825053
AbstractArticlePDF–858K
20.
The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin
Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen
Science. Author manuscript; available in PMC 2010 Feb 10.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815
Correction in:
volume 317 on page 1325
PMCID:
PMC2819280
AbstractArticlePDF–1.3M

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