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Items: 20

1.
FOXN3 regulates hepatic glucose utilization
Santhosh Karanth, Erin K. Zinkhan, Jonathon T. Hill, H. Joseph Yost, Amnon Schlegel
Cell Rep. Author manuscript; available in PMC 2016 Jun 22.
Published in final edited form as: Cell Rep. 2016 Jun 21; 15(12): 2745–2755. Published online 2016 Jun 9. doi: 10.1016/j.celrep.2016.05.056
PMCID:
PMC4917433
AbstractArticlePDF–1.0M
2.
Single-cell analysis uncovers that metabolic reprogramming by ErbB2 signaling is essential for cardiomyocyte proliferation in the regenerating heart
Hessel Honkoop, Dennis EM de Bakker, Alla Aharonov, Fabian Kruse, Avraham Shakked, Phong D Nguyen, Cecilia de Heus, Laurence Garric, Mauro J Muraro, Adam Shoffner, Federico Tessadori, Joshua Craiger Peterson, Wendy Noort, Alberto Bertozzi, Gilbert Weidinger, George Posthuma, Dominic Grün, Willem J van der Laarse, Judith Klumperman, Richard T Jaspers, Kenneth D Poss, Alexander van Oudenaarden, Eldad Tzahor, Jeroen Bakkers
eLife. 2019; 8: e50163. Published online 2019 Dec 23. doi: 10.7554/eLife.50163
PMCID:
PMC7000220
AbstractArticlePDF–5.8M
3.
The 16p11.2 homologs fam57ba and doc2a generate certain brain and body phenotypes
Jasmine M. McCammon, Alicia Blaker-Lee, Xiao Chen, Hazel Sive
Hum Mol Genet. 2017 Oct 1; 26(19): 3699–3712. Published online 2017 Jul 7. doi: 10.1093/hmg/ddx255
PMCID:
PMC5886277
AbstractArticlePDF–1.3M
4.
Knockout of Nur77 Leads to Amino Acid, Lipid, and Glucose Metabolism Disorders in Zebrafish
Yang Xu, Juanjuan Tian, Qi Kang, Hang Yuan, Chengdong Liu, Zhehui Li, Jie Liu, Mingyu Li
Front Endocrinol (Lausanne) 2022; 13: 864631. Published online 2022 Apr 25. doi: 10.3389/fendo.2022.864631
PMCID:
PMC9084189
AbstractArticlePDF–9.4M
5.
Transcriptome Analysis of Zebrafish Embryogenesis Using Microarrays
Sinnakaruppan Mathavan, Serene G. P Lee, Alicia Mak, Lance D Miller, Karuturi Radha Krishna Murthy, Kunde R Govindarajan, Yan Tong, Yi Lian Wu, Siew Hong Lam, Henry Yang, Yijun Ruan, Vladimir Korzh, Zhiyuan Gong, Edison T Liu, Thomas Lufkin
PLoS Genet. 2005 Aug; 1(2): e29. Published online 2005 Aug 26. doi: 10.1371/journal.pgen.0010029
PMCID:
PMC1193535
AbstractArticlePDF–1.3M
6.
Zebrafish homologs of genes within 16p11.2, a genomic region associated with brain disorders, are active during brain development, and include two deletion dosage sensor genes
Alicia Blaker-Lee, Sunny Gupta, Jasmine M. McCammon, Gianluca De Rienzo, Hazel Sive
Dis Model Mech. 2012 Nov; 5(6): 834–851. Published online 2012 May 1. doi: 10.1242/dmm.009944
PMCID:
PMC3484866
AbstractArticle
7.
Plasma proteome responses in zebrafish following λ-carrageenan-Induced inflammation are mediated by PMN leukocytes and correlate highly with their human counterparts
Ives Charlie-Silva, Natália M. Feitosa, Leticia G. Pontes, Bianca H. Fernandes, Rafael H. Nóbrega, Juliana M. M. Gomes, Mariana N. L. Prata, Fausto K. Ferraris, Daniela C. Melo, Gabriel Conde, Letícia F. Rodrigues, Mayumi F. Aracati, José D. Corrêa-Junior, Wilson G. Manrique, Joshua Superio, Aguinaldo S. Garcez, Katia Conceição, Tania M. Yoshimura, Silvia C. Núñez, Silas F. Eto, Dayanne C. Fernandes, Anderson Z. Freitas, Martha S. Ribeiro, Artem Nedoluzhko, Mônica Lopes-Ferreira, Ricardo C. Borra, Leonardo J. G. Barcellos, Andrea C. Perez, Guilheme Malafaia, Thiago M. Cunha, Marco A. A. Belo, Jorge Galindo-Villegas
Front Immunol. 2022; 13: 1019201. Published online 2022 Sep 29. doi: 10.3389/fimmu.2022.1019201
PMCID:
PMC9559376
AbstractArticlePDF–17M
8.
Proteome-Driven Elucidation of Adaptive Responses to Combined Vitamin E and C Deficiency in Zebrafish
Ievgen Motorykin, Maret G. Traber, Robert L. Tanguay, Claudia S. Maier
J Proteome Res. 2014 Mar 7; 13(3): 1647–1656. Published online 2014 Jan 29. doi: 10.1021/pr401108d
PMCID:
PMC3993953
AbstractArticlePDF–3.8M
9.
IRF4 drives clonal evolution and lineage choice in a zebrafish model of T-cell lymphoma
Stella Amanda, Tze King Tan, Jolynn Zu Lin Ong, Madelaine Skolastika Theardy, Regina Wan Ju Wong, Xiao Zi Huang, Muhammad Zulfaqar Ali, Yan Li, Zhiyuan Gong, Hiroshi Inagaki, Ee Yong Foo, Brendan Pang, Soo Yong Tan, Shinsuke Iida, Takaomi Sanda
Nat Commun. 2022; 13: 2420. Published online 2022 May 3. doi: 10.1038/s41467-022-30053-9
PMCID:
PMC9065160
AbstractArticlePDF–5.1M
10.
A regeneration-triggered metabolic adaptation is necessary for cell identity transitions and cell cycle re-entry to support blastema formation and bone regeneration
Ana S Brandão, Jorge Borbinha, Telmo Pereira, Patrícia H Brito, Raquel Lourenço, Anabela Bensimon-Brito, Antonio Jacinto
eLife. 2022; 11: e76987. Published online 2022 Aug 22. doi: 10.7554/eLife.76987
PMCID:
PMC9395193
AbstractArticlePDF–6.1M
11.
Tris(1,3-dichloro-2-propyl) phosphate Exposure During Early-Blastula Alters the Normal Trajectory of Zebrafish Embryogenesis
Subham Dasgupta, Vanessa Cheng, Sara M. F. Vliet, Constance A. Mitchell, David C. Volz
Environ Sci Technol. Author manuscript; available in PMC 2019 Sep 18.
Published in final edited form as: Environ Sci Technol. 2018 Sep 18; 52(18): 10820–10828. Published online 2018 Sep 10. doi: 10.1021/acs.est.8b03730
PMCID:
PMC6169527
AbstractArticlePDF–1.2M
12.
Zebrafish mRNA sequencing deciphers novelties in transcriptome dynamics during maternal to zygotic transition
Håvard Aanes, Cecilia L. Winata, Chi Ho Lin, Jieqi P. Chen, Kandhadayar G. Srinivasan, Serene G.P. Lee, Adrian Y.M. Lim, Hajira Shreen Hajan, Philippe Collas, Guillaume Bourque, Zhiyuan Gong, Vladimir Korzh, Peter Aleström, Sinnakaruppan Mathavan
Genome Res. 2011 Aug; 21(8): 1328–1338. doi: 10.1101/gr.116012.110
PMCID:
PMC3149499
AbstractArticlePDF–1.7M
13.
RNA-Seq reveals differential expression profiles and functional annotation of genes involved in retinal degeneration in Pde6c mutant Danio rerio
Madhu Sudhana Saddala, Anton Lennikov, Adam Bouras, Hu Huang
BMC Genomics. 2020; 21: 132. Published online 2020 Feb 7. doi: 10.1186/s12864-020-6550-z
PMCID:
PMC7006399
AbstractArticlePDF–2.2M
14.
Hematopoietic gene expression profile in zebrafish kidney marrow
Huai-Dong Song, Xiao-Jian Sun, Min Deng, Guo-Wei Zhang, Yi Zhou, Xin-Yan Wu, Yan Sheng, Yi Chen, Zheng Ruan, Chun-Lei Jiang, Hui-Yong Fan, Leonard I. Zon, John P. Kanki, Ting Xi Liu, A. Thomas Look, Zhu Chen
Proc Natl Acad Sci U S A. 2004 Nov 16; 101(46): 16240–16245. Published online 2004 Nov 1. doi: 10.1073/pnas.0407241101
PMCID:
PMC528959
AbstractArticlePDF–551K
15.
The zebrafish gene map defines ancestral vertebrate chromosomes
Ian G. Woods, Catherine Wilson, Brian Friedlander, Patricia Chang, Daengnoy K. Reyes, Rebecca Nix, Peter D. Kelly, Felicia Chu, John H. Postlethwait, William S. Talbot
Genome Res. 2005 Sep; 15(9): 1307–1314. doi: 10.1101/gr.4134305
PMCID:
PMC1199546
AbstractArticlePDF–595K
16.
Evolution of complexity in the zebrafish synapse proteome
Àlex Bayés, Mark O. Collins, Rita Reig-Viader, Gemma Gou, David Goulding, Abril Izquierdo, Jyoti S. Choudhary, Richard D. Emes, Seth G. N. Grant
Nat Commun. 2017; 8: 14613. Published online 2017 Mar 2. doi: 10.1038/ncomms14613
PMCID:
PMC5337974
AbstractArticlePDF–2.0M
17.
RFX transcription factors are essential for hearing in mice
Ran Elkon, Beatrice Milon, Laura Morrison, Manan Shah, Sarath Vijayakumar, Manoj Racherla, Carmen C. Leitch, Lorna Silipino, Shadan Hadi, Michèle Weiss-Gayet, Emmanuèle Barras, Christoph D. Schmid, Aouatef Ait-Lounis, Ashley Barnes, Yang Song, David J. Eisenman, Efrat Eliyahu, Gregory I. Frolenkov, Scott E. Strome, Bénédicte Durand, Norann A. Zaghloul, Sherri M. Jones, Walter Reith, Ronna Hertzano
Nat Commun. 2015; 6: 8549. Published online 2015 Oct 15. doi: 10.1038/ncomms9549
PMCID:
PMC4634137
AbstractArticlePDF–5.5M
18.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K
19.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
20.
Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database
Jeremy Pasquier, Cédric Cabau, Thaovi Nguyen, Elodie Jouanno, Dany Severac, Ingo Braasch, Laurent Journot, Pierre Pontarotti, Christophe Klopp, John H. Postlethwait, Yann Guiguen, Julien Bobe
BMC Genomics. 2016; 17: 368. Published online 2016 May 18. doi: 10.1186/s12864-016-2709-z
PMCID:
PMC4870732
AbstractArticlePDF–1.8M

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