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1.
Minako Izutsu, Atsushi Toyoda, Asao Fujiyama, Kiyokazu Agata, Naoyuki Fuse
G3 (Bethesda) 2016 Feb; 6(2): 365–376. Published online 2015 Dec 4. doi: 10.1534/g3.115.023549
PMCID:
PMC4751556
2.
Kaveh Daneshvar, Sritama Nath, Abid Khan, Wesley Shover, Christine Richardson, Julie M. Goodliffe
Biol Open. 2013 Jan 15; 2(1): 1–9. Published online 2012 Oct 23. doi: 10.1242/bio.20122725
PMCID:
PMC3545263
3.
Walter Arancio, Maria C. Onorati, Giosalba Burgio, Marianna Collesano, Antonia M. R. Ingrassia, Swonild I. Genovese, Manolis Fanto, Davide F. V. Corona
Genetics. 2010 May; 185(1): 129–140. doi: 10.1534/genetics.110.114256
PMCID:
PMC2870949
4.
Cory J Evans, John M Olson, Bama Charan Mondal, Pratyush Kandimalla, Ariano Abbasi, Mai M Abdusamad, Osvaldo Acosta, Julia A Ainsworth, Haris M Akram, Ralph B Albert, Elitzander Alegria-Leal, Kai Y Alexander, Angelica C Ayala, Nataliya S Balashova, Rebecca M Barber, Harmanjit Bassi, Sean P Bennion, Miriam Beyder, Kush V Bhatt, Chinmay Bhoot, Aaron W Bradshaw, Tierney G Brannigan, Boyu Cao, Yancey Y Cashell, II,, Timothy Chai, Alex W Chan, Carissa Chan, Inho Chang, Jonathan Chang, Michael T Chang, Patrick W Chang, Stephen Chang, Neel Chari, Alexander J Chassiakos, Iris E Chen, Vivian K Chen, Zheying Chen, Marsha R Cheng, Mimi Chiang, Vivian Chiu, Sharon Choi, Jun Ho Chung, Liset Contreras, Edgar Corona, Courtney J Cruz, Renae L Cruz, Jefferson M Dang, Suhas P Dasari, Justin R O De La Fuente, Oscar M A Del Rio, Emily R Dennis, Petros S Dertsakyan, Ipsita Dey, Rachel S Distler, Zhiqiao Dong, Leah C Dorman, Mark A Douglass, Allysen B Ehresman, Ivy H Fu, Andrea Fua, Sean M Full, Arash Ghaffari-Rafi, Asmar Abdul Ghani, Bosco Giap, Sonia Gill, Zafar S Gill, Nicholas J Gills, Sindhuja Godavarthi, Talin Golnazarian, Raghav Goyal, Ricardo Gray, Alexander M Grunfeld, Kelly M Gu, Natalia C Gutierrez, An N Ha, Iman Hamid, Ashley Hanson, Celesti Hao, Chongbin He, Mengshi He, Joshua P Hedtke, Ysrael K Hernandez, Hnin Hlaing, Faith A Hobby, Karen Hoi, Ashley C Hope, Sahra M Hosseinian, Alice Hsu, Jennifer Hsueh, Eileen Hu, Spencer S Hu, Stephanie Huang, Wilson Huang, Melanie Huynh, Carmen Javier, Na Eun Jeon, Sunjong Ji, Jasmin Johal, Amala John, Lauren Johnson, Saurin Kadakia, Namrata Kakade, Sarah Kamel, Ravinder Kaur, Jagteshwar S Khatra, Jeffrey A Kho, Caleb Kim, Emily Jin-Kyung Kim, Hee Jong Kim, Hyun Wook Kim, Jin Hee Kim, Seong Ah Kim, Woo Kyeom Kim, Brian Kit, Cindy La, Jonathan Lai, Vivian Lam, Nguyen Khoi Le, Chi Ju Lee, Dana Lee, Dong Yeon Lee, James Lee, Jason Lee, Jessica Lee, Ju-Yeon Lee, Sharon Lee, Terrence C Lee, Victoria Lee, Amber J Li, Jialing Li, Alexandra M Libro, Irvin C Lien, Mia Lim, Jeffrey M Lin, Connie Y Liu, Steven C Liu, Irene Louie, Shijia W Lu, William Y Luo, Tiffany Luu, Josef T Madrigal, Yishan Mai, Darron I Miya, Mina Mohammadi, Sayonika Mohanta, Tebogo Mokwena, Tonatiuh Montoya, Dallas L Mould, Mark R Murata, Janani Muthaiya, Seethim Naicker, Mallory R Neebe, Amy Ngo, Duy Q Ngo, Jamie A Ngo, Anh T Nguyen, Huy C X Nguyen, Rina H Nguyen, Thao T T Nguyen, Vincent T Nguyen, Kevin Nishida, Seo-Kyung Oh, Kristen M Omi, Mary C Onglatco, Guadalupe Ortega Almazan, Jahzeel Paguntalan, Maharshi Panchal, Stephanie Pang, Harin B Parikh, Purvi D Patel, Trisha H Patel, Julia E Petersen, Steven Pham, Tien M Phan-Everson, Megha Pokhriyal, Davis W Popovich, Adam T Quaal, Karl Querubin, Anabel Resendiz, Nadezhda Riabkova, Fred Rong, Sarah Salarkia, Nateli Sama, Elaine Sang, David A Sanville, Emily R Schoen, Zhouyang Shen, Ken Siangchin, Gabrielle Sibal, Garuem Sin, Jasmine Sjarif, Christopher J Smith, Annisa N Soeboer, Cristian Sosa, Derek Spitters, Bryan Stender, Chloe C Su, Jenny Summapund, Beatrice J Sun, Christine Sutanto, Jaime S Tan, Nguon L Tan, Parich Tangmatitam, Cindy K Trac, Conny Tran, Daniel Tran, Duy Tran, Vina Tran, Patrick A Truong, Brandon L Tsai, Pei-Hua Tsai, C Kimberly Tsui, Jackson K Uriu, Sanan Venkatesh, Maique Vo, Nhat-Thi Vo, Phuong Vo, Timothy C Voros, Yuan Wan, Eric Wang, Jeffrey Wang, Michael K Wang, Yuxuan Wang, Siman Wei, Matthew N Wilson, Daniel Wong, Elliott Wu, Hanning Xing, Jason P Xu, Sahar Yaftaly, Kimberly Yan, Evan Yang, Rebecca Yang, Tony Yao, Patricia Yeo, Vivian Yip, Puja Yogi, Gloria Chin Young, Maggie M Yung, Alexander Zai, Christine Zhang, Xiao X Zhang, Zijun Zhao, Raymond Zhou, Ziqi Zhou, Mona Abutouk, Brian Aguirre, Chon Ao, Alexis Baranoff, Angad Beniwal, Zijie Cai, Ryan Chan, Kenneth Chang Chien, Umar Chaudhary, Patrick Chin, Praptee Chowdhury, Jamlah Dalie, Eric Y Du, Alec Estrada, Erwin Feng, Monica Ghaly, Rose Graf, Eduardo Hernandez, Kevin Herrera, Vivien W Ho, Kaitlyn Honeychurch, Yurianna Hou, Jo M Huang, Momoko Ishii, Nicholas James, Gah-Eun Jang, Daphne Jin, Jesse Juarez, Ayse Elif Kesaf, Sat Kartar Khalsa, Hannah Kim, Jenna Kovsky, Chak Lon Kuang, Shraddha Kumar, Gloria Lam, Ceejay Lee, Grace Lee, Li Li, Joshua Lin, Josephine Liu, Janice Ly, Austin Ma, Hannah Markovic, Cristian Medina, Jonelle Mungcal, Bilguudei Naranbaatar, Kayla Patel, Lauren Petersen, Amanda Phan, Malcolm Phung, Nadiyah Priasti, Nancy Ruano, Tanveer Salim, Kristen Schnell, Paras Shah, Jinhua Shen, Nathan Stutzman, Alisa Sukhina, Rayna Tian, Andrea Vega-Loza, Joyce Wang, Jun Wang, Rina Watanabe, Brandon Wei, Lillian Xie, Jessica Ye, Jeffrey Zhao, Jill Zimmerman, Colton Bracken, Jason Capili, Andrew Char, Michel Chen, Pingdi Huang, Sena Ji, Emily Kim, Kenneth Kim, Julie Ko, Sean Louise G Laput, Sam Law, Sang Kuk Lee, Olivia Lee, David Lim, Eric Lin, Kyle Marik, Josh Mytych, Andie O'Laughlin, Jensen Pak, Claire Park, Ruth Ryu, Ashwin Shinde, Manny Sosa, Nick Waite, Mane Williams, Richard Wong, Jocelyn Woo, Jonathan Woo, Vishaal Yepuri, Dorothy Yim, Dan Huynh, Dinali Wijiewarnasurya, Casey Shapiro, Marc Levis-Fitzgerald, Leslie Jaworski, David Lopatto, Ira E Clark, Tracy Johnson, Utpal Banerjee
G3 (Bethesda) 2021 Jan; 11(1): jkaa028. Published online 2021 Jan 30. doi: 10.1093/g3journal/jkaa028
PMCID:
PMC8022729
5.
Albert J. Erives
Dev Genes Evol. 2015; 225(5): 259–273. Published online 2015 Jul 15. doi: 10.1007/s00427-015-0508-1
PMCID:
PMC4568025
6.
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
7.
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
8.
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
9.
G. Gregory Neely, Keiji Kuba, Anthony Cammarato, Kazuya Isobe, Sabine Amann, Liyong Zhang, Mitsushige Murata, Lisa Elmén, Vaijayanti Gupta, Suchir Arora, Rinku Sarangi, Debasis Dan, Susumu Fujisawa, Takako Usami, Cui-ping Xia, Alex C. Keene, Nakissa N. Alayari, Hiroyuki Yamakawa, Ulrich Elling, Christian Berger, Maria Novatchkova, Rubina Koglgruber, Keiichi Fukuda, Hiroshi Nishina, Mitsuaki Isobe, J. Andrew Pospisilik, Yumiko Imai, Arne Pfeufer, Andrew A Hicks, Peter P. Pramstaller, Sai Subramaniam, Akinori Kimura, Karen Ocorr, Rolf Bodmer, Josef M. Penninger
Cell.
Published in final edited form as: Cell. 2010 Apr 2; 141(1): 142–153. doi: 10.1016/j.cell.2010.02.023
PMCID:
PMC2855221
10.
G. Gregory Neely, Andreas Hess, Michael Costigan, Alex C. Keene, Spyros Goulas, Michiel Langeslag, Robert S Griffin, Inna Belfer, Feng Dai, Shad Smith, Luda Diatchenko, Vaijayanti Gupta, Cui-ping Xia, Sabina Amann, Silke Kreitz, Cornelia Heindl-Erdmann, Susanne Wolz, Cindy V. Ly, Suchir Arora, Rinku Sarangi, Debasis Dan, Maria Novatchkova, Mark Rosenzweig, Dustin Gibson, Darwin Truong, Daniel Schramek, Tamara Zoranovic, Shane J. F. Cronin, Belinda Angjeli, Kay Brune, Georg Dietzl, William Maixner, Arabella Meixner, Winston Thomas, J. Andrew Pospisilik, Mattias Alenius, Michaela Kress, Sai Subramaniam, Paul A. Garrity, Hugo J. Bellen, Clifford J. Woolf, Josef M. Penninger
Cell.
Published in final edited form as: Cell. 2010 Nov 12; 143(4): 628–638. doi: 10.1016/j.cell.2010.09.047
PMCID:
PMC3040441
11.
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
12.
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
13.
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
14.
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
15.
Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker
Science.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816
PMCID:
PMC2825053
16.
Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen
Science.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815
Correction in:
volume 317 on page 1325
PMCID:
PMC2819280
17.
Hadi Quesneville, Casey M Bergman, Olivier Andrieu, Delphine Autard, Danielle Nouaud, Michael Ashburner, Dominique Anxolabehere
PLoS Comput Biol. 2005 Jul; 1(2): e22. Published online 2005 Jul 29. doi: 10.1371/journal.pcbi.0010022
PMCID:
PMC1185648
18.
Roger A Hoskins, Christopher D Smith, Joseph W Carlson, A Bernardo Carvalho, Aaron Halpern, Joshua S Kaminker, Cameron Kennedy, Chris J Mungall, Beth A Sullivan, Granger G Sutton, Jiro C Yasuhara, Barbara T Wakimoto, Eugene W Myers, Susan E Celniker, Gerald M Rubin, Gary H Karpen
Genome Biol. 2002; 3(12): research0085.1–85.16. Published online 2002 Dec 31. doi: 10.1186/gb-2002-3-12-research0085
PMCID:
PMC151187
19.
Joshua S Kaminker, Casey M Bergman, Brent Kronmiller, Joseph Carlson, Robert Svirskas, Sandeep Patel, Erwin Frise, David A Wheeler, Suzanna E Lewis, Gerald M Rubin, Michael Ashburner, Susan E Celniker
Genome Biol. 2002; 3(12): research0084.1–84.2. Published online 2002 Dec 23. doi: 10.1186/gb-2002-3-12-research0084
PMCID:
PMC151186
20.
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330

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