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Items: 1 to 20 of 22

1.
Changes in neuronal CycD/Cdk4 activity affect aging, neurodegeneration, and oxidative stress
Amalia Icreverzi, Aida Flor A de la Cruz, David W Walker, Bruce A Edgar
Aging Cell. 2015 Oct; 14(5): 896–906. Published online 2015 Jul 29. doi: 10.1111/acel.12376
PMCID:
PMC4568977
ArticlePDF–2.1M
2.
Microgravity simulation by diamagnetic levitation: effects of a strong gradient magnetic field on the transcriptional profile of Drosophila melanogaster
Raul Herranz, Oliver J Larkin, Camelia E Dijkstra, Richard JA Hill, Paul Anthony, Michael R Davey, Laurence Eaves, Jack JWA van Loon, F Javier Medina, Roberto Marco
BMC Genomics. 2012; 13: 52. Published online 2012 Feb 1. doi: 10.1186/1471-2164-13-52
PMCID:
PMC3305489
ArticlePDF–1.6M
3.
Laser Microdissection of Sensory Organ Precursor Cells of Drosophila Microchaetes
Eulalie Buffin, Michel Gho
PLoS One. 2010; 5(2): e9285. Published online 2010 Feb 19. doi: 10.1371/journal.pone.0009285
PMCID:
PMC2824816
ArticlePDF–286K
4.
Gene Expression in a Drosophila Model of Mitochondrial Disease
Daniel J. M. Fernández-Ayala, Shanjun Chen, Esko Kemppainen, Kevin M. C. O'Dell, Howard T. Jacobs
PLoS One. 2010; 5(1): e8549. Published online 2010 Jan 6. doi: 10.1371/journal.pone.0008549
PMCID:
PMC2798955
ArticlePDF–518K
5.
Somatic, germline and sex hierarchy regulated gene expression during Drosophila metamorphosis
Matthew S Lebo, Laura E Sanders, Fengzhu Sun, Michelle N Arbeitman
BMC Genomics. 2009; 10: 80. Published online 2009 Feb 13. doi: 10.1186/1471-2164-10-80
PMCID:
PMC2656526
ArticlePDF–613K
6.
Reproductive Status Alters Transcriptomic Response to Infection in Female Drosophila melanogaster
Sarah M. Short, Brian P. Lazzaro
G3 (Bethesda) 2013 May; 3(5): 827–840. Published online 2013 May 1. doi: 10.1534/g3.112.005306
PMCID:
PMC3656730
ArticlePDF–1.9M
7.
An exploration of the sequence of a 2.9-Mb region of the genome of Drosophila melanogaster: the Adh region.
M Ashburner, S Misra, J Roote, S E Lewis, R Blazej, T Davis, C Doyle, R Galle, R George, N Harris, G Hartzell, D Harvey, L Hong, K Houston, R Hoskins, G Johnson, C Martin, A Moshrefi, M Palazzolo, M G Reese, A Spradling, G Tsang, K Wan, K Whitelaw, S Celniker, et al.
Genetics. 1999 Sep; 153(1): 179–219. doi: 10.1093/genetics/153.1.179
PMCID:
PMC1460734
SummaryPDF–1.0M
8.
Screen for mitochondrial DNA copy number maintenance genes reveals essential role for ATP synthase
Atsushi Fukuoh, Giuseppe Cannino, Mike Gerards, Suzanne Buckley, Selena Kazancioglu, Filippo Scialo, Eero Lihavainen, Andre Ribeiro, Eric Dufour, Howard T Jacobs
Mol Syst Biol. 2014 Jun 25; 10(6): 734. Published online 2014 Jul 1. doi: 10.15252/msb.20145117
PMCID:
PMC4265055
ArticlePDF–1.4M
9.
Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome
Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair
Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999
PMCID:
PMC4928047
ArticlePDF–3.1M
10.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
ArticlePDF–3.2M
11.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
ArticlePDF–1.5M
12.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
ArticlePDF–1022K
13.
Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin
Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker
Science. Author manuscript; available in PMC 2010 Feb 19.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816
PMCID:
PMC2825053
ArticlePDF–858K
14.
The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin
Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen
Science. Author manuscript; available in PMC 2010 Feb 10.
Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815
Correction in:
volume 317 on page 1325
PMCID:
PMC2819280
ArticlePDF–1.3M
15.
Combined Evidence Annotation of Transposable Elements in Genome Sequences
Hadi Quesneville, Casey M Bergman, Olivier Andrieu, Delphine Autard, Danielle Nouaud, Michael Ashburner, Dominique Anxolabehere
PLoS Comput Biol. 2005 Jul; 1(2): e22. Published online 2005 Jul 29. doi: 10.1371/journal.pcbi.0010022
PMCID:
PMC1185648
ArticlePDF–273K
16.
Heterochromatic sequences in a Drosophila whole-genome shotgun assembly
Roger A Hoskins, Christopher D Smith, Joseph W Carlson, A Bernardo Carvalho, Aaron Halpern, Joshua S Kaminker, Cameron Kennedy, Chris J Mungall, Beth A Sullivan, Granger G Sutton, Jiro C Yasuhara, Barbara T Wakimoto, Eugene W Myers, Susan E Celniker, Gerald M Rubin, Gary H Karpen
Genome Biol. 2002; 3(12): research0085.1–85.16. Published online 2002 Dec 31. doi: 10.1186/gb-2002-3-12-research0085
PMCID:
PMC151187
ArticlePDF–280K
17.
The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective
Joshua S Kaminker, Casey M Bergman, Brent Kronmiller, Joseph Carlson, Robert Svirskas, Sandeep Patel, Erwin Frise, David A Wheeler, Suzanna E Lewis, Gerald M Rubin, Michael Ashburner, Susan E Celniker
Genome Biol. 2002; 3(12): research0084.1–84.2. Published online 2002 Dec 23. doi: 10.1186/gb-2002-3-12-research0084
PMCID:
PMC151186
ArticlePDF–330K
18.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
ArticlePDF–2.2M
19.
Finishing a whole-genome shotgun: Release 3 of the Drosophila melanogaster euchromatic genome sequence
Susan E Celniker, David A Wheeler, Brent Kronmiller, Joseph W Carlson, Aaron Halpern, Sandeep Patel, Mark Adams, Mark Champe, Shannon P Dugan, Erwin Frise, Ann Hodgson, Reed A George, Roger A Hoskins, Todd Laverty, Donna M Muzny, Catherine R Nelson, Joanne M Pacleb, Soo Park, Barret D Pfeiffer, Stephen Richards, Erica J Sodergren, Robert Svirskas, Paul E Tabor, Kenneth Wan, Mark Stapleton, Granger G Sutton, Craig Venter, George Weinstock, Steven E Scherer, Eugene W Myers, Richard A Gibbs, Gerald M Rubin
Genome Biol. 2002; 3(12): research0079.1–79.14. Published online 2002 Dec 23. doi: 10.1186/gb-2002-3-12-research0079
PMCID:
PMC151181
ArticlePDF–171K
20.
Annotation of the Drosophila melanogaster euchromatic genome: a systematic review
Sima Misra, Madeline A Crosby, Christopher J Mungall, Beverley B Matthews, Kathryn S Campbell, Pavel Hradecky, Yanmei Huang, Joshua S Kaminker, Gillian H Millburn, Simon E Prochnik, Christopher D Smith, Jonathan L Tupy, Eleanor J Whitfield, Leyla Bayraktaroglu, Benjamin P Berman, Brian R Bettencourt, Susan E Celniker, Aubrey DNJ de Grey, Rachel A Drysdale, Nomi L Harris, John Richter, Susan Russo, Andrew J Schroeder, ShengQiang Shu, Mark Stapleton, Chihiro Yamada, Michael Ashburner, William M Gelbart, Gerald M Rubin, Suzanna E Lewis
Genome Biol. 2002; 3(12): research0083.1–83.22. Published online 2002 Dec 31. doi: 10.1186/gb-2002-3-12-research0083
PMCID:
PMC151185
ArticlePDF–1.1M

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