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Select item 91483881.

Protein Assembly by Design

Jie Zhu, Nicole Avakyan, Albert A. Kakkis, Alexander M. Hoffnagle, Kenneth Han, Yiying Li, Zhiyin Zhang, Tae Su Choi, Youjeong Na, Chung-Jui Yu, F. Akif Tezcan

Chem Rev. Author manuscript; available in PMC 2022 May 29.

Published in final edited form as: Chem Rev. 2021 Nov 24; 121(22): 13701–13796. Published online 2021 Aug 18. doi: 10.1021/acs.chemrev.1c00308

PMCID:: PMC9148388

Abstract Article PDF–25M

Select item 95237182.

Protein Design: From the Aspect of Water Solubility and Stability

Rui Qing, Shilei Hao, Eva Smorodina, David Jin, Arthur Zalevsky, Shuguang Zhang

Chem Rev. 2022 Sep 28; 122(18): 14085–14179. Published online 2022 Aug 3. doi: 10.1021/acs.chemrev.1c00757

PMCID:: PMC9523718

Abstract Article PDF–60M

Select item 69955673.

Life in Phases: Intra- and Inter- Molecular Phase Transitions in Protein Solutions

Vladimir N. Uversky, Alexei V. Finkelstein

Biomolecules. 2019 Dec; 9(12): 842. Published online 2019 Dec 8. doi: 10.3390/biom9120842

PMCID:: PMC6995567

Abstract Article PDF–6.8M

Select item 91369354.

Paramagnetic Chemical Probes for Studying Biological Macromolecules

Qing Miao, Christoph Nitsche, Henry Orton, Mark Overhand, Gottfried Otting, Marcellus Ubbink

Chem Rev. 2022 May 25; 122(10): 9571–9642. Published online 2022 Jan 27. doi: 10.1021/acs.chemrev.1c00708

PMCID:: PMC9136935

Abstract Article PDF–11M

Select item 88209765.

A not-so-ancient grease history: click chemistry and protein lipid modifications

Kiall F. Suazo, Keun-Young Park, Mark D. Distefano

Chem Rev. Author manuscript; available in PMC 2022 Jun 23.

Published in final edited form as: Chem Rev. 2021 Jun 23; 121(12): 7178–7248. Published online 2021 Apr 6. doi: 10.1021/acs.chemrev.0c01108

PMCID:: PMC8820976

Abstract Article PDF–5.3M

Select item 89202746.

Large-scale design and refinement of stable proteins using sequence-only models

Jedediah M. Singer, Scott Novotney, Devin Strickland, Hugh K. Haddox, Nicholas Leiby, Gabriel J. Rocklin, Cameron M. Chow, Anindya Roy, Asim K. Bera, Francis C. Motta, Longxing Cao, Eva-Maria Strauch, Tamuka M. Chidyausiku, Alex Ford, Ethan Ho, Alexander Zaitzeff, Craig O. Mackenzie, Hamed Eramian, Frank DiMaio, Gevorg Grigoryan, Matthew Vaughn, Lance J. Stewart, David Baker, Eric Klavins

PLoS One. 2022; 17(3): e0265020. Published online 2022 Mar 14. doi: 10.1371/journal.pone.0265020

PMCID:: PMC8920274

Abstract Article PDF–4.0M

Select item 75317647.

Mass Spectrometry-Based Protein Footprinting for High Order Structure Analysis: Fundamentals and Applications

Xiaoran Roger Liu, Mengru Mira Zhang, Michael L. Gross

Chem Rev. Author manuscript; available in PMC 2021 May 27.

Published in final edited form as: Chem Rev. 2020 May 27; 120(10): 4355–4454. Published online 2020 Apr 22. doi: 10.1021/acs.chemrev.9b00815

PMCID:: PMC7531764

Abstract Article PDF–4.3M

Select item 110099658.

Computational Approaches to Predict Protein–Protein Interactions in Crowded Cellular Environments

Greta Grassmann, Mattia Miotto, Fausta Desantis, Lorenzo Di Rienzo, Gian Gaetano Tartaglia, Annalisa Pastore, Giancarlo Ruocco, Michele Monti, Edoardo Milanetti

Chem Rev. 2024 Apr 10; 124(7): 3932–3977. Published online 2024 Mar 27. doi: 10.1021/acs.chemrev.3c00550

PMCID:: PMC11009965

Abstract Article PDF–14M

Select item 109794059.

Do Ionic Liquids Exhibit the Required Characteristics to Dissolve, Extract, Stabilize, and Purify Proteins? Past-Present-Future Assessment

Pankaj Bharmoria, Alesia A. Tietze, Dibyendu Mondal, Tejwant Singh Kang, Arvind Kumar, Mara G Freire

Chem Rev. 2024 Mar 27; 124(6): 3037–3084. Published online 2024 Mar 4. doi: 10.1021/acs.chemrev.3c00551

PMCID:: PMC10979405

Abstract Article PDF–24M

Select item 598520910.

Protein lipidation: Occurrence, mechanisms, biological functions, and enabling technologies

Hong Jiang, Xiaoyu Zhang, Xiao Chen, Pornpun Aramsangtienchai, Zhen Tong, Hening Lin

Chem Rev. Author manuscript; available in PMC 2019 Feb 14.

Published in final edited form as: Chem Rev. 2018 Feb 14; 118(3): 919–988. Published online 2018 Jan 2. doi: 10.1021/acs.chemrev.6b00750

PMCID:: PMC5985209

Abstract Article PDF–5.5M

Select item 583153611.

Electrostatic Interactions in Protein Structure, Folding, Binding, and Condensation

Huan-Xiang Zhou, Xiaodong Pang

Chem Rev. Author manuscript; available in PMC 2019 Feb 28.

Published in final edited form as: Chem Rev. 2018 Feb 28; 118(4): 1691–1741. Published online 2018 Jan 10. doi: 10.1021/acs.chemrev.7b00305

PMCID:: PMC5831536

Abstract Article PDF–3.8M

Select item 1094068212.

Protein lipidation in health and disease: molecular basis, physiological function and pathological implication

Yuan Yuan, Peiyuan Li, Jianghui Li, Qiu Zhao, Ying Chang, Xingxing He

Signal Transduct Target Ther. 2024; 9: 60. Published online 2024 Mar 15. doi: 10.1038/s41392-024-01759-7

PMCID:: PMC10940682

Abstract Article PDF–7.1M

Select item 919717313.

Mass Spectrometry Methods for Measuring Protein Stability

Daniel D. Vallejo, Carolina Rojas Ramírez, Kristine F. Parson, Yilin Han, Varun G. Gadkari, Brandon T. Ruotolo

Chem Rev. Author manuscript; available in PMC 2022 Jun 14.

Published in final edited form as: Chem Rev. 2022 Apr 27; 122(8): 7690–7719. Published online 2022 Mar 22. doi: 10.1021/acs.chemrev.1c00857

PMCID:: PMC9197173

Abstract Article PDF–2.6M

Select item 1130091014.

Rescaling protein-protein interactions improves Martini 3 for flexible proteins in solution

F. Emil Thomasen, Tórur Skaalum, Ashutosh Kumar, Sriraksha Srinivasan, Stefano Vanni, Kresten Lindorff-Larsen

Nat Commun. 2024; 15: 6645. Published online 2024 Aug 5. doi: 10.1038/s41467-024-50647-9

PMCID:: PMC11300910

Abstract Article PDF–6.1M

Select item 710127115.

Chemoenzymatic Semisynthesis of Proteins

Robert E. Thompson, Tom W. Muir

Chem Rev. Author manuscript; available in PMC 2021 Mar 25.

Published in final edited form as: Chem Rev. 2020 Mar 25; 120(6): 3051–3126. Published online 2019 Nov 27. doi: 10.1021/acs.chemrev.9b00450

PMCID:: PMC7101271

Abstract Article PDF–13M

Select item 1132302816.

Genetic Functionalization of Protein-Based Biomaterials via Protein Fusions

Gabriela Geraldo Mendes, Britt Faulk, Bhavika Kaparthi, Andrew R. Irion, Brandon Look Fong, Kayla Bayless, Sarah E. Bondos

Biomacromolecules. 2024 Aug 12; 25(8): 4639–4662. Published online 2024 Jul 29. doi: 10.1021/acs.biomac.4c00188

PMCID:: PMC11323028

Abstract Article PDF–5.3M

Select item 1012673117.

Assessing structure and disorder prediction tools for de novo emerged proteins in the age of machine learning

Margaux Aubel, Lars Eicholt, Erich Bornberg-Bauer

Version 1. F1000Res. 2023; 12: 347. Published online 2023 Mar 29. doi: 10.12688/f1000research.130443.1

PMCID:: PMC10126731

Abstract Article PDF–2.5M

Select item 874546118.

The Molecular Biodiversity of Protein Targeting and Protein Transport Related to the Endoplasmic Reticulum

Andrea Tirincsi, Mark Sicking, Drazena Hadzibeganovic, Sarah Haßdenteufel, Sven Lang

Int J Mol Sci. 2022 Jan; 23(1): 143. Published online 2021 Dec 23. doi: 10.3390/ijms23010143

PMCID:: PMC8745461

Abstract Article PDF–3.9M

Select item 570364519.

Deep transcriptome annotation enables the discovery and functional characterization of cryptic small proteins

Sondos Samandi, Annie V Roy, Vivian Delcourt, Jean-François Lucier, Jules Gagnon, Maxime C Beaudoin, Benoît Vanderperre, Marc-André Breton, Julie Motard, Jean-François Jacques, Mylène Brunelle, Isabelle Gagnon-Arsenault, Isabelle Fournier, Aida Ouangraoua, Darel J Hunting, Alan A Cohen, Christian R Landry, Michelle S Scott, Xavier Roucou

eLife. 2017; 6: e27860. Published online 2017 Oct 30. doi: 10.7554/eLife.27860