txid2309[Organism:noexp] - PMC

Akira Hirata, Takeo Suzuki, Tomoko Nagano, Daishiro Fujii, Mizuki Okamoto, Manaka Sora, Todd M. Lowe, Tamotsu Kanai, Haruyuki Atomi, Tsutomu Suzuki, Hiroyuki Hori

J Bacteriol. 2019 Nov 1; 201(21): e00448-19. Prepublished online 2019 Aug 12. Published online 2019 Oct 4. doi: 10.1128/JB.00448-19

PMCID:: PMC6779453

Abstract Article PDF–1.0M

Select item 67593475.

Pol B, a Family B DNA Polymerase, in Thermococcus kodakarensis is Important for DNA Repair, but not DNA Replication

Takashi Kushida, Issay Narumi, Sonoko Ishino, Yoshizumi Ishino, Shinsuke Fujiwara, Tadayuki Imanaka, Hiroki Higashibata

Microbes Environ. 2019 Sep; 34(3): 316–326. Published online 2019 Jul 27. doi: 10.1264/jsme2.ME19075

PMCID:: PMC6759347

Abstract Article PDF–1.0M

Select item 63133476.

Transfer RNA Modification Enzymes from Thermophiles and Their Modified Nucleosides in tRNA

Hiroyuki Hori, Takuya Kawamura, Takako Awai, Anna Ochi, Ryota Yamagami, Chie Tomikawa, Akira Hirata

Microorganisms. 2018 Dec; 6(4): 110. Published online 2018 Oct 20. doi: 10.3390/microorganisms6040110

PMCID:: PMC6313347

Abstract Article PDF–1.9M

Select item 58461627.

An ornithine ω-aminotransferase required for growth in the absence of exogenous proline in the archaeon Thermococcus kodakarensis

Ren-Chao Zheng, Shin-ichi Hachisuka, Hiroya Tomita, Tadayuki Imanaka, Yu-Guo Zheng, Makoto Nishiyama, Haruyuki Atomi

J Biol Chem. 2018 Mar 9; 293(10): 3625–3636. Published online 2018 Jan 19. doi: 10.1074/jbc.RA117.001222

PMCID:: PMC5846162

Abstract Article PDF–3.7M

Select item 60927478.

Pyrodictium delaneyi sp. nov., a hyperthermophilic autotrophic archaeon that reduces Fe(III) oxide and nitrate

T. Jennifer Lin, Gabriel El Sebae, Jong-Hyun Jung, Dong-Hyun Jung, Cheon-Seok Park, James F. Holden

Int J Syst Evol Microbiol. Author manuscript; available in PMC 2018 Aug 15.

Published in final edited form as: Int J Syst Evol Microbiol. 2016 Sep; 66(9): 3372–3376. Published online 2016 Jun 3. doi: 10.1099/ijsem.0.001201

PMCID:: PMC6092747

Abstract Article PDF–532K

Select item 48586799.

PCNA is involved in the EndoQ-mediated DNA repair process in Thermococcales

Miyako Shiraishi, Sonoko Ishino, Kotaro Yoshida, Takeshi Yamagami, Isaac Cann, Yoshizumi Ishino

Sci Rep. 2016; 6: 25532. Published online 2016 May 6. doi: 10.1038/srep25532

PMCID:: PMC4858679

Abstract Article PDF–926K

Select item 476791110.

Draft Genome Sequence of Pyrodictium occultum PL19^T, a Marine Hyperthermophilic Species of Archaea That Grows Optimally at 105°C

Sagar M. Utturkar, Harald Huber, Sebastian Leptihn, Belinda Loh, Steven D. Brown, Karl O. Stetter, Mircea Podar

Genome Announc. 2016 Jan-Feb; 4(1): e00016-16. Published online 2016 Feb 25. doi: 10.1128/genomeA.00016-16

PMCID:: PMC4767911

Abstract Article PDF–150K

Select item 414889611.

DNA polymerases as useful reagents for biotechnology – the history of developmental research in the field

Sonoko Ishino, Yoshizumi Ishino

Front Microbiol. 2014; 5: 465. Published online 2014 Aug 29. doi: 10.3389/fmicb.2014.00465

PMCID:: PMC4148896

Abstract Article PDF–430K

Select item 390842112.

Role of the LEXE Motif of Protein-primed DNA Polymerases in the Interaction with the Incoming Nucleotide

Eugenia Santos, José M. Lázaro, Patricia Pérez-Arnaiz, Margarita Salas, Miguel de Vega

J Biol Chem. 2014 Jan 31; 289(5): 2888–2898. Published online 2013 Dec 9. doi: 10.1074/jbc.M113.530980

PMCID:: PMC3908421

Abstract Article PDF–2.9M

Select item 315639713.

Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A^T)

Iain Anderson, Markus Göker, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Konstantinos Liolios, Natalia Ivanova, Ioanna Pagani, Konstantinos Mavromatis, Galina Ovchinikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Evelyne-Marie Brambilla, Harald Huber, Montri Yasawong, Manfred Rohde, Stefan Spring, Birte Abt, Johannes Sikorski, Reinhard Wirth, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Alla Lapidus

Stand Genomic Sci. 2011 Jul 1; 4(3): 381–392. Published online 2011 Jul 1. doi: 10.4056/sigs.2014648

PMCID:: PMC3156397

Abstract Article PDF–2.6M

Select item 448170514.

Biosynthesis of Wyosine Derivatives in tRNA: An Ancient and Highly Diverse Pathway in Archaea

Valérie de Crécy-Lagard, Céline Brochier-Armanet, Jaunius Urbonavičius, Bernard Fernandez, Gabriela Phillips, Benjamin Lyons, Akiko Noma, Sophie Alvarez, Louis Droogmans, Jean Armengaud, Henri Grosjean

Mol Biol Evol. 2010 Sep; 27(9): 2062–2077. Published online 2010 Apr 9. doi: 10.1093/molbev/msq096

PMCID:: PMC4481705

Abstract Article PDF–1.4M

Select item 279826415.

Thermococcus kodakarensis Mutants Deficient in Di-myo-Inositol Phosphate Use Aspartate To Cope with Heat Stress

Nuno Borges, Rie Matsumi, Tadayuki Imanaka, Haruyuki Atomi, Helena Santos

J Bacteriol. 2010 Jan; 192(1): 191–197. Published online 2009 Oct 30. doi: 10.1128/JB.01115-09

PMCID:: PMC2798264

Abstract Article PDF–720K

Select item 275302516.

The Iho670 Fibers of Ignicoccus hospitalis: a New Type of Archaeal Cell Surface Appendage

Daniel W. Müller, Carolin Meyer, Sonja Gürster, Ulf Küper, Harald Huber, Reinhard Rachel, Gerhard Wanner, Reinhard Wirth, Annett Bellack

J Bacteriol. 2009 Oct; 191(20): 6465–6468. Published online 2009 Aug 14. doi: 10.1128/JB.00858-09

PMCID:: PMC2753025

Abstract Article PDF–1.4M

Select item 273867517.

Gain and loss of an intron in a protein-coding gene in Archaea: the case of an archaeal RNA pseudouridine synthase gene

Shin-ichi Yokobori, Takashi Itoh, Shigeo Yoshinari, Norimichi Nomura, Yoshihiko Sako, Akihiko Yamagishi, Tairo Oshima, Kiyoshi Kita, Yoh-ichi Watanabe

BMC Evol Biol. 2009; 9: 198. Published online 2009 Aug 11. doi: 10.1186/1471-2148-9-198

PMCID:: PMC2738675

Abstract Article PDF–944K

Select item 258410918.

RNomics and Modomics in the halophilic archaea Haloferax volcanii: identification of RNA modification genes

Henri Grosjean, Christine Gaspin, Christian Marck, Wayne A Decatur, Valérie de Crécy-Lagard

BMC Genomics. 2008; 9: 470. Published online 2008 Oct 9. doi: 10.1186/1471-2164-9-470

PMCID:: PMC2584109

Abstract Article PDF–936K

Select item 224189519.

Uracil recognition by replicative DNA polymerases is limited to the archaea, not occurring with bacteria and eukarya

Josephine Wardle, Peter M. J. Burgers, Isaac K. O. Cann, Kate Darley, Pauline Heslop, Erik Johansson, Li-Jung Lin, Peter McGlynn, Jonathan Sanvoisin, Carrie M. Stith, Bernard A. Connolly

Nucleic Acids Res. 2008 Feb; 36(3): 705–711. Published online 2007 Nov 21. doi: 10.1093/nar/gkm1023

PMCID:: PMC2241895

Abstract Article PDF–383K

Select item 207508020.

Isolation, Characterization, and Ecology of Sulfur-Respiring Crenarchaea Inhabiting Acid-Sulfate-Chloride-Containing Geothermal Springs in Yellowstone National Park

Eric S. Boyd, Robert A. Jackson, Gem Encarnacion, James A. Zahn, Trevor Beard, William D. Leavitt, Yundan Pi, Chuanlun L. Zhang, Ann Pearson, Gill G. Geesey

Appl Environ Microbiol. 2007 Oct; 73(20): 6669–6677. Published online 2007 Aug 24. doi: 10.1128/AEM.01321-07

PMCID:: PMC2075080

Abstract Article PDF–431K

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