LOCUS NM_202463 2056 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana RNI-like superfamily protein (AT1G80570),
mRNA.
ACCESSION NM_202463
VERSION NM_202463.1
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2056)
AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
Fraser,C.M., Venter,J.C. and Davis,R.W.
TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 816-820 (2000)
PUBMED 11130712
REFERENCE 2 (bases 1 to 2056)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2056)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 5 (bases 1 to 2056)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003070).
FEATURES Location/Qualifiers
source 1..2056
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="1"
/ecotype="Columbia"
gene 1..2056
/locus_tag="AT1G80570"
/gene_synonym="T21F11.10; T21F11_10"
/db_xref="Araport:AT1G80570"
/db_xref="GeneID:844396"
/db_xref="TAIR:AT1G80570"
CDS 466..1869
/locus_tag="AT1G80570"
/gene_synonym="T21F11.10; T21F11_10"
/inference="Similar to RNA sequence,
EST:INSD:BP853454.1,INSD:BX834360.1,INSD:AA605518.1,
INSD:BX837130.1,INSD:BX837334.1,INSD:AU227173.1,
INSD:BP611017.1,INSD:BX834255.1,INSD:H77138.1,
INSD:BP810433.1,INSD:ES152924.1,INSD:BP573966.1,
INSD:BP670694.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT004407.1,INSD:BX814974.1"
/note="RNI-like superfamily protein; CONTAINS InterPro
DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810);
BEST Arabidopsis thaliana protein match is: F-box/RNI-like
superfamily protein (TAIR:AT4G15475.1); Has 35333 Blast
hits to 34131 proteins in 2444 species: Archae - 798;
Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink)."
/codon_start=1
/product="RNI-like superfamily protein"
/protein_id="NP_974192.1"
/db_xref="Araport:AT1G80570"
/db_xref="GeneID:844396"
/db_xref="TAIR:AT1G80570"
/translation="MDELPDHLVWDILSKLHTTDDRNSLSLSCKRFFSLDNEQRYSLR
IGCGLVPASDALLSLCRRFPNLSKVEIIYSGWMSKLGKQVDDQGLLVLTTNCHSLTDL
TLSFCTFITDVGIGHLSSCPELSSLKLNFAPRITGCGVLSLAVGCKKLRRLHLIRCLN
VASVEWLEYFGKLETLEELCIKNCRAIGEGDLIKLRNSWRKLTSLQFEVDANYRYMKV
YDQLDVERWPKQLVPCDSLVELSLGNCIIAPGRGLACVLRNCKNLEKLHLDMCTGVSD
SDIIALVQKASHLRSISLRVPSDFTLPLLNNITLRLTDESLSAIAQHCSKLESFKISF
SDGEFPSLFSFTLQGIITLIQKCPVRELSLDHVCVFNDMGMEALCSAQKLEILELVHC
QEVSDEGLILVSQFPSLNVLKLSKCLGVTDDGMRPLVGSHKLELLVVEDCPQVSRRGV
HGAATSVSFKQDLSWMY"
ORIGIN
1 ccgtagtcct tatccggcgc cgagtgtggt caaacgtcgc aagagttttc gctctttccg
61 gtgagatctt tttcctctga tttctgtttc atggcaagcc tacttttaga gctgagttta
121 atcgatgaat caaggatgtg aatttttgtt atttcttgat tattcattat tatgttcaag
181 aaatctaaat ctctgcttgg gaactaattc acaatttaga catctctgat gagtttttcc
241 tctgtttttt atttctatct tatcaatttt gtttctggaa attttcatgg ctttttgaat
301 gttcattggg attgcgtatc ttggtggtgg taagtaaaaa gtcaaacgcc ttcgtttttc
361 tgcataatct ctgagttcca tcaaagctct gttttgtgtt ttcaaggtgg acttttcact
421 tgacatgtta ggctttgatc cttttttgtt cacacagata gacaaatgga tgaattgcca
481 gaccatttgg tttgggacat tctcagtaag cttcatacta ccgatgacag aaactcgctt
541 tcactctcat gcaaacgttt cttctcgctg gacaacgagc aaagatactc tctgcggatt
601 ggttgcggtt tagttcctgc atccgatgca ttgctttctc tctgcaggag gtttccaaat
661 ctttccaaag tggagattat atactcaggc tggatgtcaa aacttggcaa acaagttgac
721 gatcaaggcc ttcttgtcct gaccacaaac tgtcattctc tcactgatct cactctgagc
781 ttctgcacct tcatcaccga tgttggcata ggccatttgt cgtcgtgtcc agagctttct
841 tcgttgaagt taaatttcgc tcccaggatc actggttgtg gtgtgttgtc acttgctgta
901 ggatgcaaga aactcaggag acttcatctc attcgatgcc taaacgttgc aagtgtagag
961 tggttggagt atttcggaaa gcttgagact ttagaagaac tctgtatcaa gaactgcaga
1021 gccattgggg aaggtgattt gatcaagctg aggaatagct ggcgaaagct gacaagtctg
1081 cagtttgagg tagatgccaa ttacaggtac atgaaggttt acgaccagtt agatgtggaa
1141 cggtggccca aacagttggt tccctgtgac agtctggtgg agctcagcct cggtaactgc
1201 atcatagctc ctggtagagg gctcgcttgt gtgctgagaa attgcaagaa cctggagaag
1261 cttcatctgg acatgtgtac cggtgtcagc gactcagaca tcatagcatt ggttcagaaa
1321 gctagtcacc taagaagcat ctcgctccgt gtcccgtccg attttactct gcctctctta
1381 aacaacatca cgttaagatt aaccgatgaa agcctcagcg ccatagctca acactgctca
1441 aagctcgaat ctttcaagat atctttctca gacggtgaat tcccttccct cttctctttc
1501 acactccagg ggataatcac tctgatccag aaatgcccag tacgcgagct ttctcttgac
1561 catgtgtgtg tattcaacga catggggatg gaggctctat gttcagctca gaaacttgag
1621 atcttagagc ttgtccattg ccaagaagtg agcgatgagg ggttgattct ggtgagccag
1681 tttccttctc tcaatgtgtt gaagttatca aaatgtctgg gagtgacaga cgatggaatg
1741 agaccacttg ttggatctca caagttggag ttgcttgttg ttgaagattg tcctcaggtt
1801 tcaagaagag gtgttcatgg tgctgcaacg tctgtctcgt ttaagcaaga tttgtcatgg
1861 atgtattgag atcgtatgat ttgcttccta tgtacaattt tactcatgtg taagtaagtg
1921 taaatgttcg atctttggga cagaaaaatt actaatgcct cagtgatgat caagtttaaa
1981 atgacgtcat agcagttgta tataaacagt catggatgat gtaatgttgt tactctttaa
2041 tttaatggtg cgtttt
//