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Arabidopsis thaliana RNI-like superfamily protein (AT1G80570), mRNA

NCBI Reference Sequence: NM_202463.1

FASTA Graphics 

LOCUS       NM_202463               2056 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana RNI-like superfamily protein (AT1G80570),
            mRNA.
ACCESSION   NM_202463
VERSION     NM_202463.1
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S.,
            White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L.,
            Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F.,
            Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R.,
            Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J.,
            Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B.,
            Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J.,
            Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L.,
            Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S.,
            Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X.,
            Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J.,
            Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G.,
            Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H.,
            Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H.,
            Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T.,
            Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G.,
            Fraser,C.M., Venter,J.C. and Davis,R.W.
  TITLE     Sequence and analysis of chromosome 1 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 816-820 (2000)
   PUBMED   11130712
REFERENCE   2  (bases 1 to 2056)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2056)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2056)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   5  (bases 1 to 2056)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003070).
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="1"
                     /ecotype="Columbia"
     gene            1..2056
                     /locus_tag="AT1G80570"
                     /gene_synonym="T21F11.10; T21F11_10"
                     /db_xref="Araport:AT1G80570"
                     /db_xref="GeneID:844396"
                     /db_xref="TAIR:AT1G80570"
     CDS             466..1869
                     /locus_tag="AT1G80570"
                     /gene_synonym="T21F11.10; T21F11_10"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP853454.1,INSD:BX834360.1,INSD:AA605518.1,
                     INSD:BX837130.1,INSD:BX837334.1,INSD:AU227173.1,
                     INSD:BP611017.1,INSD:BX834255.1,INSD:H77138.1,
                     INSD:BP810433.1,INSD:ES152924.1,INSD:BP573966.1,
                     INSD:BP670694.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BT004407.1,INSD:BX814974.1"
                     /note="RNI-like superfamily protein; CONTAINS InterPro
                     DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810);
                     BEST Arabidopsis thaliana protein match is: F-box/RNI-like
                     superfamily protein (TAIR:AT4G15475.1); Has 35333 Blast
                     hits to 34131 proteins in 2444 species: Archae - 798;
                     Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants -
                     531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
                     BLink)."
                     /codon_start=1
                     /product="RNI-like superfamily protein"
                     /protein_id="NP_974192.1"
                     /db_xref="Araport:AT1G80570"
                     /db_xref="GeneID:844396"
                     /db_xref="TAIR:AT1G80570"
                     /translation="MDELPDHLVWDILSKLHTTDDRNSLSLSCKRFFSLDNEQRYSLR
                     IGCGLVPASDALLSLCRRFPNLSKVEIIYSGWMSKLGKQVDDQGLLVLTTNCHSLTDL
                     TLSFCTFITDVGIGHLSSCPELSSLKLNFAPRITGCGVLSLAVGCKKLRRLHLIRCLN
                     VASVEWLEYFGKLETLEELCIKNCRAIGEGDLIKLRNSWRKLTSLQFEVDANYRYMKV
                     YDQLDVERWPKQLVPCDSLVELSLGNCIIAPGRGLACVLRNCKNLEKLHLDMCTGVSD
                     SDIIALVQKASHLRSISLRVPSDFTLPLLNNITLRLTDESLSAIAQHCSKLESFKISF
                     SDGEFPSLFSFTLQGIITLIQKCPVRELSLDHVCVFNDMGMEALCSAQKLEILELVHC
                     QEVSDEGLILVSQFPSLNVLKLSKCLGVTDDGMRPLVGSHKLELLVVEDCPQVSRRGV
                     HGAATSVSFKQDLSWMY"
ORIGIN      
        1 ccgtagtcct tatccggcgc cgagtgtggt caaacgtcgc aagagttttc gctctttccg
       61 gtgagatctt tttcctctga tttctgtttc atggcaagcc tacttttaga gctgagttta
      121 atcgatgaat caaggatgtg aatttttgtt atttcttgat tattcattat tatgttcaag
      181 aaatctaaat ctctgcttgg gaactaattc acaatttaga catctctgat gagtttttcc
      241 tctgtttttt atttctatct tatcaatttt gtttctggaa attttcatgg ctttttgaat
      301 gttcattggg attgcgtatc ttggtggtgg taagtaaaaa gtcaaacgcc ttcgtttttc
      361 tgcataatct ctgagttcca tcaaagctct gttttgtgtt ttcaaggtgg acttttcact
      421 tgacatgtta ggctttgatc cttttttgtt cacacagata gacaaatgga tgaattgcca
      481 gaccatttgg tttgggacat tctcagtaag cttcatacta ccgatgacag aaactcgctt
      541 tcactctcat gcaaacgttt cttctcgctg gacaacgagc aaagatactc tctgcggatt
      601 ggttgcggtt tagttcctgc atccgatgca ttgctttctc tctgcaggag gtttccaaat
      661 ctttccaaag tggagattat atactcaggc tggatgtcaa aacttggcaa acaagttgac
      721 gatcaaggcc ttcttgtcct gaccacaaac tgtcattctc tcactgatct cactctgagc
      781 ttctgcacct tcatcaccga tgttggcata ggccatttgt cgtcgtgtcc agagctttct
      841 tcgttgaagt taaatttcgc tcccaggatc actggttgtg gtgtgttgtc acttgctgta
      901 ggatgcaaga aactcaggag acttcatctc attcgatgcc taaacgttgc aagtgtagag
      961 tggttggagt atttcggaaa gcttgagact ttagaagaac tctgtatcaa gaactgcaga
     1021 gccattgggg aaggtgattt gatcaagctg aggaatagct ggcgaaagct gacaagtctg
     1081 cagtttgagg tagatgccaa ttacaggtac atgaaggttt acgaccagtt agatgtggaa
     1141 cggtggccca aacagttggt tccctgtgac agtctggtgg agctcagcct cggtaactgc
     1201 atcatagctc ctggtagagg gctcgcttgt gtgctgagaa attgcaagaa cctggagaag
     1261 cttcatctgg acatgtgtac cggtgtcagc gactcagaca tcatagcatt ggttcagaaa
     1321 gctagtcacc taagaagcat ctcgctccgt gtcccgtccg attttactct gcctctctta
     1381 aacaacatca cgttaagatt aaccgatgaa agcctcagcg ccatagctca acactgctca
     1441 aagctcgaat ctttcaagat atctttctca gacggtgaat tcccttccct cttctctttc
     1501 acactccagg ggataatcac tctgatccag aaatgcccag tacgcgagct ttctcttgac
     1561 catgtgtgtg tattcaacga catggggatg gaggctctat gttcagctca gaaacttgag
     1621 atcttagagc ttgtccattg ccaagaagtg agcgatgagg ggttgattct ggtgagccag
     1681 tttccttctc tcaatgtgtt gaagttatca aaatgtctgg gagtgacaga cgatggaatg
     1741 agaccacttg ttggatctca caagttggag ttgcttgttg ttgaagattg tcctcaggtt
     1801 tcaagaagag gtgttcatgg tgctgcaacg tctgtctcgt ttaagcaaga tttgtcatgg
     1861 atgtattgag atcgtatgat ttgcttccta tgtacaattt tactcatgtg taagtaagtg
     1921 taaatgttcg atctttggga cagaaaaatt actaatgcct cagtgatgat caagtttaaa
     1981 atgacgtcat agcagttgta tataaacagt catggatgat gtaatgttgt tactctttaa
     2041 tttaatggtg cgtttt
//
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