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Arabidopsis thaliana Ubiquitin fusion degradation UFD1 family protein (AT2G29070), mRNA

NCBI Reference Sequence: NM_201828.4

FASTA Graphics 

LOCUS       NM_201828               1352 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Ubiquitin fusion degradation UFD1 family
            protein (AT2G29070), mRNA.
ACCESSION   NM_201828
VERSION     NM_201828.4
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1352)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 1352)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1352)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1352)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003071).
            
            On Sep 12, 2016 this sequence version replaced NM_201828.3.
FEATURES             Location/Qualifiers
     source          1..1352
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     gene            1..1352
                     /locus_tag="AT2G29070"
                     /gene_synonym="T9I4.15; T9I4_15"
                     /db_xref="Araport:AT2G29070"
                     /db_xref="GeneID:817455"
                     /db_xref="TAIR:AT2G29070"
     CDS             136..1074
                     /locus_tag="AT2G29070"
                     /gene_synonym="T9I4.15; T9I4_15"
                     /inference="Similar to RNA sequence,
                     EST:INSD:ES205097.1,INSD:EL206724.1,INSD:EH962769.1,
                     INSD:DR368619.1,INSD:ES151708.1,INSD:AA395617.1,
                     INSD:ES148642.1,INSD:EL265202.1,INSD:AI996981.1,
                     INSD:ES156451.1,INSD:ES207895.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BT012260.1,INSD:BT011682.1"
                     /note="Ubiquitin fusion degradation UFD1 family protein;
                     INVOLVED IN: ubiquitin-dependent protein catabolic
                     process; LOCATED IN: cellular_component unknown; EXPRESSED
                     IN: 18 plant structures; EXPRESSED DURING: 10 growth
                     stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion
                     degradation protein UFD1 (InterPro:IPR004854); BEST
                     Arabidopsis thaliana protein match is: ubiquitin fusion
                     degradation 1 (TAIR:AT2G21270.2); Has 35333 Blast hits to
                     34131 proteins in 2444 species: Archae - 798; Bacteria -
                     22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
                     0; Other Eukaryotes - 9610 (source: NCBI BLink)."
                     /codon_start=1
                     /product="Ubiquitin fusion degradation UFD1 family
                     protein"
                     /protein_id="NP_973557.1"
                     /db_xref="Araport:AT2G29070"
                     /db_xref="GeneID:817455"
                     /db_xref="TAIR:AT2G29070"
                     /translation="MDGDGSSFEQCYRCYPVTFIDKAHLEKGDKIIMPPSALDRLASL
                     HIEYPMLFQLSNVSVEKTSHCGVLEFTADEGLVYLPYWMMQNMSLEEGDVMQVKNISL
                     VKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDTIMVPYNNKQYYINVVEAK
                     PSSAVSIIETDCEVDFAPPLDYKEPEKPQKLTPSNKRPLQVKEEEEPASKVPKFTPFT
                     GSGKRLDGKAQTQTEPEDTKQQEKPTENGKDDEKLSVTTPRQISGKLVFGSNSKSAAK
                     ETAKVDDPKNIVQESSTKSDEAKFKVFTGKKYSLNG"
ORIGIN      
        1 gaagaatctc ttctttcttc ttctctgcaa tcaaaacaac ttttccaatt tttcagttcc
       61 gatctgctgc cattgactag gaagatcttc aagcttcaaa actctataat cggatctttt
      121 attccttgtg gagatatgga tggagatggt tctagctttg agcagtgtta ccgttgttat
      181 cctgtcacat tcattgacaa ggcacatctt gagaagggtg acaaaattat catgcctcct
      241 tccgctctcg atcgtcttgc ttctttgcat attgaatacc caatgctgtt tcaactgagt
      301 aatgtttctg ttgagaagac ctcacattgt ggtgtactag aattcactgc agacgaaggc
      361 ctagtttact tgccatattg gatgatgcaa aacatgtctc ttgaagaggg agacgttatg
      421 caagttaaga atatcagctt ggtaaaaggg acttacatca agctgcagcc tcacactcaa
      481 gatttcttgg atatttccaa cccaaaagcc atcttggaga ctacgcttag gagttactct
      541 tgcttaacca cgggtgatac aattatggtt ccgtataaca acaagcaata ttacatcaat
      601 gtggttgagg caaaaccttc ttcagctgtg agtattatcg aaacggattg tgaggttgat
      661 tttgctcctc ctcttgatta caaagaacct gagaagccac agaagttgac tccttcaaac
      721 aaacgacctc tccaagttaa agaagaagaa gaacctgcaa gcaaagttcc caaattcacg
      781 ccgttcactg gatcaggaaa acgtttagat ggaaaagcac aaacacaaac tgaaccagaa
      841 gatacaaaac agcaagaaaa gccgactgag aatgggaaag acgatgagaa gttgtcagtc
      901 actacaccaa ggcaaatatc aggaaagctc gtctttggtt caaacagcaa atcagctgca
      961 aaagaaacag cgaaagttga tgatccaaag aacattgtgc aagagagctc aacaaaatcc
     1021 gatgaagcta agttcaaagt gttcacaggg aagaaatact cactcaatgg ttaaaaacgg
     1081 ttctgctgaa gatatttatc tttttaagca tttatacatt ctctcgtcaa tatattggat
     1141 ggaacctaag cgacaatgac cctaaggata acacagatgt gtctgaaagc ttgattcttt
     1201 aacttagatg tgtcgaacta taggttattg atatgatcct atcttaatat gttttggaga
     1261 caaagtgaac aaaaatcaga aatttcaatc agggaatata cttttgtcga ttgattatac
     1321 acagctttct cattcatcca cgagtacaga gg
//
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