LOCUS NM_201828 1352 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Ubiquitin fusion degradation UFD1 family
protein (AT2G29070), mRNA.
ACCESSION NM_201828
VERSION NM_201828.4
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1352)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 1352)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1352)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1352)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003071).
On Sep 12, 2016 this sequence version replaced NM_201828.3.
FEATURES Location/Qualifiers
source 1..1352
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
gene 1..1352
/locus_tag="AT2G29070"
/gene_synonym="T9I4.15; T9I4_15"
/db_xref="Araport:AT2G29070"
/db_xref="GeneID:817455"
/db_xref="TAIR:AT2G29070"
CDS 136..1074
/locus_tag="AT2G29070"
/gene_synonym="T9I4.15; T9I4_15"
/inference="Similar to RNA sequence,
EST:INSD:ES205097.1,INSD:EL206724.1,INSD:EH962769.1,
INSD:DR368619.1,INSD:ES151708.1,INSD:AA395617.1,
INSD:ES148642.1,INSD:EL265202.1,INSD:AI996981.1,
INSD:ES156451.1,INSD:ES207895.1"
/inference="similar to RNA sequence,
mRNA:INSD:BT012260.1,INSD:BT011682.1"
/note="Ubiquitin fusion degradation UFD1 family protein;
INVOLVED IN: ubiquitin-dependent protein catabolic
process; LOCATED IN: cellular_component unknown; EXPRESSED
IN: 18 plant structures; EXPRESSED DURING: 10 growth
stages; CONTAINS InterPro DOMAIN/s: Ubiquitin fusion
degradation protein UFD1 (InterPro:IPR004854); BEST
Arabidopsis thaliana protein match is: ubiquitin fusion
degradation 1 (TAIR:AT2G21270.2); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses -
0; Other Eukaryotes - 9610 (source: NCBI BLink)."
/codon_start=1
/product="Ubiquitin fusion degradation UFD1 family
protein"
/protein_id="NP_973557.1"
/db_xref="Araport:AT2G29070"
/db_xref="GeneID:817455"
/db_xref="TAIR:AT2G29070"
/translation="MDGDGSSFEQCYRCYPVTFIDKAHLEKGDKIIMPPSALDRLASL
HIEYPMLFQLSNVSVEKTSHCGVLEFTADEGLVYLPYWMMQNMSLEEGDVMQVKNISL
VKGTYIKLQPHTQDFLDISNPKAILETTLRSYSCLTTGDTIMVPYNNKQYYINVVEAK
PSSAVSIIETDCEVDFAPPLDYKEPEKPQKLTPSNKRPLQVKEEEEPASKVPKFTPFT
GSGKRLDGKAQTQTEPEDTKQQEKPTENGKDDEKLSVTTPRQISGKLVFGSNSKSAAK
ETAKVDDPKNIVQESSTKSDEAKFKVFTGKKYSLNG"
ORIGIN
1 gaagaatctc ttctttcttc ttctctgcaa tcaaaacaac ttttccaatt tttcagttcc
61 gatctgctgc cattgactag gaagatcttc aagcttcaaa actctataat cggatctttt
121 attccttgtg gagatatgga tggagatggt tctagctttg agcagtgtta ccgttgttat
181 cctgtcacat tcattgacaa ggcacatctt gagaagggtg acaaaattat catgcctcct
241 tccgctctcg atcgtcttgc ttctttgcat attgaatacc caatgctgtt tcaactgagt
301 aatgtttctg ttgagaagac ctcacattgt ggtgtactag aattcactgc agacgaaggc
361 ctagtttact tgccatattg gatgatgcaa aacatgtctc ttgaagaggg agacgttatg
421 caagttaaga atatcagctt ggtaaaaggg acttacatca agctgcagcc tcacactcaa
481 gatttcttgg atatttccaa cccaaaagcc atcttggaga ctacgcttag gagttactct
541 tgcttaacca cgggtgatac aattatggtt ccgtataaca acaagcaata ttacatcaat
601 gtggttgagg caaaaccttc ttcagctgtg agtattatcg aaacggattg tgaggttgat
661 tttgctcctc ctcttgatta caaagaacct gagaagccac agaagttgac tccttcaaac
721 aaacgacctc tccaagttaa agaagaagaa gaacctgcaa gcaaagttcc caaattcacg
781 ccgttcactg gatcaggaaa acgtttagat ggaaaagcac aaacacaaac tgaaccagaa
841 gatacaaaac agcaagaaaa gccgactgag aatgggaaag acgatgagaa gttgtcagtc
901 actacaccaa ggcaaatatc aggaaagctc gtctttggtt caaacagcaa atcagctgca
961 aaagaaacag cgaaagttga tgatccaaag aacattgtgc aagagagctc aacaaaatcc
1021 gatgaagcta agttcaaagt gttcacaggg aagaaatact cactcaatgg ttaaaaacgg
1081 ttctgctgaa gatatttatc tttttaagca tttatacatt ctctcgtcaa tatattggat
1141 ggaacctaag cgacaatgac cctaaggata acacagatgt gtctgaaagc ttgattcttt
1201 aacttagatg tgtcgaacta taggttattg atatgatcct atcttaatat gttttggaga
1261 caaagtgaac aaaaatcaga aatttcaatc agggaatata cttttgtcga ttgattatac
1321 acagctttct cattcatcca cgagtacaga gg
//