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Arabidopsis thaliana embryo defective 2737 (emb2737), mRNA

NCBI Reference Sequence: NM_124765.5

FASTA Graphics 

LOCUS       NM_124765               1908 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana embryo defective 2737 (emb2737), mRNA.
ACCESSION   NM_124765
VERSION     NM_124765.5
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1908)
  AUTHORS   Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
            Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
            Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
            Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
            Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
            Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
            Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
            Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
            Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
            Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
            Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
            See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
            Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
            Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
            Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
            Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
            Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
            Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
            Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
            Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
            Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
            Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
            Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
  CONSRTM   Kazusa DNA Research Institute; Cold Spring Harbor and Washington
            University in St Louis Sequencing Consortium; European Union
            Arabidopsis Genome Sequencing Consortium
  TITLE     Sequence and analysis of chromosome 5 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 823-826 (2000)
   PUBMED   11130714
REFERENCE   2  (bases 1 to 1908)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1908)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1908)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003076).
            
            On Sep 12, 2016 this sequence version replaced NM_124765.4.
FEATURES             Location/Qualifiers
     source          1..1908
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="5"
                     /ecotype="Columbia"
     gene            1..1908
                     /gene="emb2737"
                     /locus_tag="AT5G53860"
                     /gene_synonym="EMB64; embryo defective 2737; EMBRYO
                     DEFECTIVE 64; K6O8.3"
                     /note="A locus involved in embryogenesis. Mutations in
                     this locus result in embryo lethality."
                     /db_xref="Araport:AT5G53860"
                     /db_xref="GeneID:835467"
                     /db_xref="TAIR:AT5G53860"
     CDS             285..1553
                     /gene="emb2737"
                     /locus_tag="AT5G53860"
                     /gene_synonym="EMB64; embryo defective 2737; EMBRYO
                     DEFECTIVE 64; K6O8.3"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL197755.1,INSD:ES078241.1,INSD:DR210237.1,
                     INSD:DR210232.1,INSD:ES094189.1,INSD:EL276724.1,
                     INSD:EL180847.1,INSD:AV530947.1,INSD:DR281356.1,
                     INSD:ES164182.1,INSD:BP817990.1,INSD:DR354772.1,
                     INSD:BP781232.1,INSD:EL227558.1,INSD:AV793206.1,
                     INSD:BP818510.1,INSD:AV787051.1,INSD:DR210241.1,
                     INSD:EL087060.1,INSD:EL986651.1,INSD:EL046911.1,
                     INSD:DR281355.1,INSD:EH802393.1,INSD:EL143773.1,
                     INSD:DR210229.1,INSD:EH825978.1,INSD:EL302492.1,
                     INSD:ES016349.1,INSD:DR210235.1,INSD:DR210228.1,
                     INSD:EL246993.1,INSD:DR210231.1,INSD:DR210227.1,
                     INSD:DR281353.1,INSD:BP644655.1,INSD:ES122212.1,
                     INSD:CB074314.1,INSD:AV794205.1,INSD:AV793011.1,
                     INSD:EL280686.1,INSD:ES041649.1,INSD:EL337584.1,
                     INSD:BP841249.1,INSD:BP785897.1,INSD:EH852490.1,
                     INSD:EL197674.1,INSD:ES004513.1,INSD:ES116612.1,
                     INSD:AV533263.1,INSD:DR354773.1,INSD:EH922670.1,
                     INSD:EL261543.1,INSD:EL042477.1,INSD:ES087629.1,
                     INSD:EH834250.1,INSD:EH895476.1,INSD:EH861495.1,
                     INSD:BP868479.1,INSD:CF651820.1,INSD:CF651819.1,
                     INSD:DR210230.1,INSD:EL032531.1,INSD:BP840043.1,
                     INSD:DR210236.1,INSD:ES157359.1,INSD:EL060417.1,
                     INSD:AV524787.1,INSD:EH956096.1,INSD:EL108771.1,
                     INSD:EH839042.1,INSD:CB264474.1,INSD:ES201614.1,
                     INSD:CB074418.1,INSD:DR210234.1,INSD:AV786339.1,
                     INSD:BP649293.1,INSD:DR210238.1,INSD:DR210225.1,
                     INSD:ES019515.1,INSD:DR210226.1,INSD:DR281354.1,
                     INSD:EH947267.1,INSD:DR210223.1,INSD:EL305669.1,
                     INSD:BP815201.1,INSD:EL121078.1,INSD:DR210239.1,
                     INSD:DR210240.1,INSD:EL189532.1,INSD:EL025397.1,
                     INSD:BP778443.1,INSD:BP857405.1,INSD:ES185124.1,
                     INSD:EH943671.1,INSD:EH892285.1,INSD:AA721892.1,
                     INSD:ES043916.1,INSD:EL138437.1,INSD:CK117674.1,
                     INSD:EL150437.1,INSD:EH967875.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:BX830664.1,INSD:BX830455.1,INSD:AY050429.1,
                     INSD:BT015611.1,INSD:AK220915.1,INSD:AY054166.1,
                     INSD:AY093994.1"
                     /note="embryo defective 2737 (emb2737); INVOLVED IN:
                     embryo development ending in seed dormancy; LOCATED IN:
                     chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
                     DURING: 13 growth stages; Has 30201 Blast hits to 17322
                     proteins in 780 species: Archae - 12; Bacteria - 1396;
                     Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
                     Other Eukaryotes - 2996 (source: NCBI BLink)."
                     /codon_start=1
                     /product="embryo defective 2737"
                     /protein_id="NP_568801.2"
                     /db_xref="GeneID:835467"
                     /db_xref="TAIR:AT5G53860"
                     /db_xref="Araport:AT5G53860"
                     /translation="MSRGPGRLIQNVTQFADAQFKQFSTRYGQQVIDILDFPIKLVLS
                     PFTLAFDIAGSAPRGFGIPEFISKISYLSVFAVATLGTYDIALDLGKKVICQRDCKTC
                     NGWQALRCTMCKGTGSVHYQIKDYNLRSGEKPTADCVADAIVENRAELVHLPSSFNHS
                     APLPSKDCPTCDGTGAMSCTECKNKLQVRISADDIMEPPWKAYNVLKKMDYPYEHIVH
                     SMKDPSIANFWLITLPQIVGGFDYDEDVKKKIWWQYEESMRYDQLRDLVAKRNPGWEY
                     LQDALVSIDPVRAREDPVIVKNVPYYKAKKSLEAEVTKLNPPPRPQNWGELNLPLNIS
                     SWSEEDLKNPAKLYEKTVLLNAQREIADKILDAQWEAKWRQEKVEEMLEQKVRPYIQD
                     SSMAVLPQPILLKSQKKAQKGSRQRKWWFF"
ORIGIN      
        1 ttcaatattt tttttctata ccacggcgct tcctccgccg tatcttcgcc gtcatcgccg
       61 caaatataga aaagacgctc gatttgggga tttctcaaat taaactcctt gtcgtttttc
      121 ttacaaagaa acgacacgta gtctaattag aaggtacatg tttggtaaca aagaataagt
      181 ctaatccaaa accgagataa gaatagtgta aaaaccactc ttgaaacctc ctcttcaaaa
      241 ataccagaga gcgagaaaag ctcttatctt cttcatcttc tccaatgtcg agaggaccag
      301 gtcgtttaat acagaacgtg acacagttcg ctgatgctca attcaaacaa ttctctactc
      361 gttatggaca acaagttata gacattctcg attttccaat caagctcgtc ttgtctcctt
      421 tcactctcgc ctttgatatc gctggctctg cacctcgtgg ttttggcatc cctgagttca
      481 tctccaaaat ttcgtatctc tctgtttttg cggttgctac gcttggaact tatgacattg
      541 cattggattt gggaaagaaa gtcatatgcc aaagggattg caaaacttgt aatgggtggc
      601 aggcattacg gtgcactatg tgcaaaggaa cagggagtgt tcattaccaa atcaaagatt
      661 acaacttgag aagtggagag aaaccaacag cagattgtgt cgcagatgct atagttgaga
      721 atcgagctga gttagttcat cttccctcct ccttcaacca tagtgctcca ttgccatcaa
      781 aagactgccc aacttgtgat ggaacgggtg cgatgagctg tactgagtgc aagaacaagc
      841 tgcaagtcag aatctcagct gatgatatca tggaacctcc atggaaagcc tataatgtgc
      901 tgaagaagat ggattatccg tacgagcaca ttgttcacag catgaaagat cccagcattg
      961 caaatttctg gttgatcact ttgcctcaga ttgtgggtgg gtttgattat gatgaagatg
     1021 tcaagaagaa aatatggtgg caatatgagg aatctatgcg atatgatcaa cttcgggact
     1081 tggtggctaa acgcaatcct ggctgggaat atttgcagga tgccttggtc tccattgatc
     1141 ctgtccgtgc tcgggaagac cccgtcatag tgaagaatgt cccttattac aaggctaaga
     1201 aatctctgga ggctgaagtc acgaaactca atccacctcc ccgtcctcag aattggggtg
     1261 aactgaatct cccattgaat atttcctctt ggagtgaaga ggatctcaaa aacccggcaa
     1321 aactgtacga gaagacagtt cttctcaatg ctcaaagaga aatcgcagac aaaatcttgg
     1381 atgcacaatg ggaagctaaa tggcgtcaag agaaggtgga ggaaatgttg gagcagaaag
     1441 tgagacctta catccaagac tcaagcatgg ctgttcttcc acaacccatc ttgttaaagt
     1501 cacagaagaa agctcaaaag ggaagccggc aaaggaagtg gtggttcttc taacctgcca
     1561 agtgtgtcga aacgaatcta tataaaatgg attttgaatt gagttttttt gtgcttcttt
     1621 gatgaaaata tgctttgata tgaatcttga tgggtgtcaa atatgattac acttcaaaat
     1681 cagttgtaat gttttaaaag aaatgttgtt tttgcagaca cttggcagat tcgttgtgta
     1741 ccgccacgtg tatacgatga tctttctttc atgctttgaa cttagttttc gtctttctcc
     1801 tatcaatcac tctctctata attcctcgtg tctcaccgtc acatttcaac aagttacgtg
     1861 tgtctttcat gttatggtat tacgaaagat ctttaccctt tttttaat
//
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