LOCUS NM_124765 1908 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana embryo defective 2737 (emb2737), mRNA.
ACCESSION NM_124765
VERSION NM_124765.5
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 1908)
AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E.,
Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T.,
Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M.,
Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R.,
Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J.,
Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J.,
Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L.,
Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B.,
Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E.,
Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A.,
Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M.,
See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L.,
Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R.,
Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R.,
Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N.,
Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B.,
Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H.,
Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W.,
Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M.,
Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S.,
Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K.,
Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C.,
Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P.
CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington
University in St Louis Sequencing Consortium; European Union
Arabidopsis Genome Sequencing Consortium
TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 823-826 (2000)
PUBMED 11130714
REFERENCE 2 (bases 1 to 1908)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 1908)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 1908)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003076).
On Sep 12, 2016 this sequence version replaced NM_124765.4.
FEATURES Location/Qualifiers
source 1..1908
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="5"
/ecotype="Columbia"
gene 1..1908
/gene="emb2737"
/locus_tag="AT5G53860"
/gene_synonym="EMB64; embryo defective 2737; EMBRYO
DEFECTIVE 64; K6O8.3"
/note="A locus involved in embryogenesis. Mutations in
this locus result in embryo lethality."
/db_xref="Araport:AT5G53860"
/db_xref="GeneID:835467"
/db_xref="TAIR:AT5G53860"
CDS 285..1553
/gene="emb2737"
/locus_tag="AT5G53860"
/gene_synonym="EMB64; embryo defective 2737; EMBRYO
DEFECTIVE 64; K6O8.3"
/inference="Similar to RNA sequence,
EST:INSD:EL197755.1,INSD:ES078241.1,INSD:DR210237.1,
INSD:DR210232.1,INSD:ES094189.1,INSD:EL276724.1,
INSD:EL180847.1,INSD:AV530947.1,INSD:DR281356.1,
INSD:ES164182.1,INSD:BP817990.1,INSD:DR354772.1,
INSD:BP781232.1,INSD:EL227558.1,INSD:AV793206.1,
INSD:BP818510.1,INSD:AV787051.1,INSD:DR210241.1,
INSD:EL087060.1,INSD:EL986651.1,INSD:EL046911.1,
INSD:DR281355.1,INSD:EH802393.1,INSD:EL143773.1,
INSD:DR210229.1,INSD:EH825978.1,INSD:EL302492.1,
INSD:ES016349.1,INSD:DR210235.1,INSD:DR210228.1,
INSD:EL246993.1,INSD:DR210231.1,INSD:DR210227.1,
INSD:DR281353.1,INSD:BP644655.1,INSD:ES122212.1,
INSD:CB074314.1,INSD:AV794205.1,INSD:AV793011.1,
INSD:EL280686.1,INSD:ES041649.1,INSD:EL337584.1,
INSD:BP841249.1,INSD:BP785897.1,INSD:EH852490.1,
INSD:EL197674.1,INSD:ES004513.1,INSD:ES116612.1,
INSD:AV533263.1,INSD:DR354773.1,INSD:EH922670.1,
INSD:EL261543.1,INSD:EL042477.1,INSD:ES087629.1,
INSD:EH834250.1,INSD:EH895476.1,INSD:EH861495.1,
INSD:BP868479.1,INSD:CF651820.1,INSD:CF651819.1,
INSD:DR210230.1,INSD:EL032531.1,INSD:BP840043.1,
INSD:DR210236.1,INSD:ES157359.1,INSD:EL060417.1,
INSD:AV524787.1,INSD:EH956096.1,INSD:EL108771.1,
INSD:EH839042.1,INSD:CB264474.1,INSD:ES201614.1,
INSD:CB074418.1,INSD:DR210234.1,INSD:AV786339.1,
INSD:BP649293.1,INSD:DR210238.1,INSD:DR210225.1,
INSD:ES019515.1,INSD:DR210226.1,INSD:DR281354.1,
INSD:EH947267.1,INSD:DR210223.1,INSD:EL305669.1,
INSD:BP815201.1,INSD:EL121078.1,INSD:DR210239.1,
INSD:DR210240.1,INSD:EL189532.1,INSD:EL025397.1,
INSD:BP778443.1,INSD:BP857405.1,INSD:ES185124.1,
INSD:EH943671.1,INSD:EH892285.1,INSD:AA721892.1,
INSD:ES043916.1,INSD:EL138437.1,INSD:CK117674.1,
INSD:EL150437.1,INSD:EH967875.1"
/inference="similar to RNA sequence,
mRNA:INSD:BX830664.1,INSD:BX830455.1,INSD:AY050429.1,
INSD:BT015611.1,INSD:AK220915.1,INSD:AY054166.1,
INSD:AY093994.1"
/note="embryo defective 2737 (emb2737); INVOLVED IN:
embryo development ending in seed dormancy; LOCATED IN:
chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; Has 30201 Blast hits to 17322
proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink)."
/codon_start=1
/product="embryo defective 2737"
/protein_id="NP_568801.2"
/db_xref="GeneID:835467"
/db_xref="TAIR:AT5G53860"
/db_xref="Araport:AT5G53860"
/translation="MSRGPGRLIQNVTQFADAQFKQFSTRYGQQVIDILDFPIKLVLS
PFTLAFDIAGSAPRGFGIPEFISKISYLSVFAVATLGTYDIALDLGKKVICQRDCKTC
NGWQALRCTMCKGTGSVHYQIKDYNLRSGEKPTADCVADAIVENRAELVHLPSSFNHS
APLPSKDCPTCDGTGAMSCTECKNKLQVRISADDIMEPPWKAYNVLKKMDYPYEHIVH
SMKDPSIANFWLITLPQIVGGFDYDEDVKKKIWWQYEESMRYDQLRDLVAKRNPGWEY
LQDALVSIDPVRAREDPVIVKNVPYYKAKKSLEAEVTKLNPPPRPQNWGELNLPLNIS
SWSEEDLKNPAKLYEKTVLLNAQREIADKILDAQWEAKWRQEKVEEMLEQKVRPYIQD
SSMAVLPQPILLKSQKKAQKGSRQRKWWFF"
ORIGIN
1 ttcaatattt tttttctata ccacggcgct tcctccgccg tatcttcgcc gtcatcgccg
61 caaatataga aaagacgctc gatttgggga tttctcaaat taaactcctt gtcgtttttc
121 ttacaaagaa acgacacgta gtctaattag aaggtacatg tttggtaaca aagaataagt
181 ctaatccaaa accgagataa gaatagtgta aaaaccactc ttgaaacctc ctcttcaaaa
241 ataccagaga gcgagaaaag ctcttatctt cttcatcttc tccaatgtcg agaggaccag
301 gtcgtttaat acagaacgtg acacagttcg ctgatgctca attcaaacaa ttctctactc
361 gttatggaca acaagttata gacattctcg attttccaat caagctcgtc ttgtctcctt
421 tcactctcgc ctttgatatc gctggctctg cacctcgtgg ttttggcatc cctgagttca
481 tctccaaaat ttcgtatctc tctgtttttg cggttgctac gcttggaact tatgacattg
541 cattggattt gggaaagaaa gtcatatgcc aaagggattg caaaacttgt aatgggtggc
601 aggcattacg gtgcactatg tgcaaaggaa cagggagtgt tcattaccaa atcaaagatt
661 acaacttgag aagtggagag aaaccaacag cagattgtgt cgcagatgct atagttgaga
721 atcgagctga gttagttcat cttccctcct ccttcaacca tagtgctcca ttgccatcaa
781 aagactgccc aacttgtgat ggaacgggtg cgatgagctg tactgagtgc aagaacaagc
841 tgcaagtcag aatctcagct gatgatatca tggaacctcc atggaaagcc tataatgtgc
901 tgaagaagat ggattatccg tacgagcaca ttgttcacag catgaaagat cccagcattg
961 caaatttctg gttgatcact ttgcctcaga ttgtgggtgg gtttgattat gatgaagatg
1021 tcaagaagaa aatatggtgg caatatgagg aatctatgcg atatgatcaa cttcgggact
1081 tggtggctaa acgcaatcct ggctgggaat atttgcagga tgccttggtc tccattgatc
1141 ctgtccgtgc tcgggaagac cccgtcatag tgaagaatgt cccttattac aaggctaaga
1201 aatctctgga ggctgaagtc acgaaactca atccacctcc ccgtcctcag aattggggtg
1261 aactgaatct cccattgaat atttcctctt ggagtgaaga ggatctcaaa aacccggcaa
1321 aactgtacga gaagacagtt cttctcaatg ctcaaagaga aatcgcagac aaaatcttgg
1381 atgcacaatg ggaagctaaa tggcgtcaag agaaggtgga ggaaatgttg gagcagaaag
1441 tgagacctta catccaagac tcaagcatgg ctgttcttcc acaacccatc ttgttaaagt
1501 cacagaagaa agctcaaaag ggaagccggc aaaggaagtg gtggttcttc taacctgcca
1561 agtgtgtcga aacgaatcta tataaaatgg attttgaatt gagttttttt gtgcttcttt
1621 gatgaaaata tgctttgata tgaatcttga tgggtgtcaa atatgattac acttcaaaat
1681 cagttgtaat gttttaaaag aaatgttgtt tttgcagaca cttggcagat tcgttgtgta
1741 ccgccacgtg tatacgatga tctttctttc atgctttgaa cttagttttc gtctttctcc
1801 tatcaatcac tctctctata attcctcgtg tctcaccgtc acatttcaac aagttacgtg
1861 tgtctttcat gttatggtat tacgaaagat ctttaccctt tttttaat
//