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Arabidopsis thaliana cysteine proteinase1 (CP1), mRNA

NCBI Reference Sequence: NM_119852.5

FASTA Graphics 

LOCUS       NM_119852               1468 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana cysteine proteinase1 (CP1), mRNA.
ACCESSION   NM_119852
VERSION     NM_119852.5
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 1468)
  AUTHORS   Mayer,K., Schuller,C., Wambutt,R., Murphy,G., Volckaert,G.,
            Pohl,T., Dusterhoft,A., Stiekema,W., Entian,K.D., Terryn,N.,
            Harris,B., Ansorge,W., Brandt,P., Grivell,L., Rieger,M.,
            Weichselgartner,M., de Simone,V., Obermaier,B., Mache,R.,
            Muller,M., Kreis,M., Delseny,M., Puigdomenech,P., Watson,M.,
            Schmidtheini,T., Reichert,B., Portatelle,D., Perez-Alonso,M.,
            Boutry,M., Bancroft,I., Vos,P., Hoheisel,J., Zimmermann,W.,
            Wedler,H., Ridley,P., Langham,S.A., McCullagh,B., Bilham,L.,
            Robben,J., Van der Schueren,J., Grymonprez,B., Chuang,Y.J.,
            Vandenbussche,F., Braeken,M., Weltjens,I., Voet,M., Bastiaens,I.,
            Aert,R., Defoor,E., Weitzenegger,T., Bothe,G., Ramsperger,U.,
            Hilbert,H., Braun,M., Holzer,E., Brandt,A., Peters,S., van
            Staveren,M., Dirske,W., Mooijman,P., Klein Lankhorst,R., Rose,M.,
            Hauf,J., Kotter,P., Berneiser,S., Hempel,S., Feldpausch,M.,
            Lamberth,S., Van den Daele,H., De Keyser,A., Buysshaert,C.,
            Gielen,J., Villarroel,R., De Clercq,R., Van Montagu,M., Rogers,J.,
            Cronin,A., Quail,M., Bray-Allen,S., Clark,L., Doggett,J., Hall,S.,
            Kay,M., Lennard,N., McLay,K., Mayes,R., Pettett,A.,
            Rajandream,M.A., Lyne,M., Benes,V., Rechmann,S., Borkova,D.,
            Blocker,H., Scharfe,M., Grimm,M., Lohnert,T.H., Dose,S., de
            Haan,M., Maarse,A., Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M.,
            Fartmann,B., Granderath,K., Dauner,D., Herzl,A., Neumann,S.,
            Argiriou,A., Vitale,D., Liguori,R., Piravandi,E., Massenet,O.,
            Quigley,F., Clabauld,G., Mundlein,A., Felber,R., Schnabl,S.,
            Hiller,R., Schmidt,W., Lecharny,A., Aubourg,S., Chefdor,F.,
            Cooke,R., Berger,C., Montfort,A., Casacuberta,E., Gibbons,T.,
            Weber,N., Vandenbol,M., Bargues,M., Terol,J., Torres,A.,
            Perez-Perez,A., Purnelle,B., Bent,E., Johnson,S., Tacon,D.,
            Jesse,T., Heijnen,L., Schwarz,S., Scholler,P., Heber,S., Francs,P.,
            Bielke,C., Frishman,D., Haase,D., Lemcke,K., Mewes,H.W.,
            Stocker,S., Zaccaria,P., Bevan,M., Wilson,R.K., de la Bastide,M.,
            Habermann,K., Parnell,L., Dedhia,N., Gnoj,L., Schutz,K., Huang,E.,
            Spiegel,L., Sehkon,M., Murray,J., Sheet,P., Cordes,M.,
            Abu-Threideh,J., Stoneking,T., Kalicki,J., Graves,T., Harmon,G.,
            Edwards,J., Latreille,P., Courtney,L., Cloud,J., Abbott,A.,
            Scott,K., Johnson,D., Minx,P., Bentley,D., Fulton,B., Miller,N.,
            Greco,T., Kemp,K., Kramer,J., Fulton,L., Mardis,E., Dante,M.,
            Pepin,K., Hillier,L., Nelson,J., Spieth,J., Ryan,E., Andrews,S.,
            Geisel,C., Layman,D., Du,H., Ali,J., Berghoff,A., Jones,K.,
            Drone,K., Cotton,M., Joshu,C., Antonoiu,B., Zidanic,M., Strong,C.,
            Sun,H., Lamar,B., Yordan,C., Ma,P., Zhong,J., Preston,R., Vil,D.,
            Shekher,M., Matero,A., Shah,R., Swaby,I.K., O'Shaughnessy,A.,
            Rodriguez,M., Hoffmann,J., Till,S., Granat,S., Shohdy,N.,
            Hasegawa,A., Hameed,A., Lodhi,M., Johnson,A., Chen,E., Marra,M.,
            Martienssen,R. and McCombie,W.R.
  TITLE     Sequence and analysis of chromosome 4 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 769-777 (1999)
   PUBMED   10617198
REFERENCE   2  (bases 1 to 1468)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 1468)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 1468)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003075).
            
            On Sep 12, 2016 this sequence version replaced NM_119852.4.
FEATURES             Location/Qualifiers
     source          1..1468
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="4"
                     /ecotype="Columbia"
     gene            1..1468
                     /gene="CP1"
                     /locus_tag="AT4G36880"
                     /gene_synonym="AP22.67; AP22_67; cysteine proteinase1;
                     RD21A-LIKE PROTEASE1; RDL1"
                     /db_xref="Araport:AT4G36880"
                     /db_xref="GeneID:829841"
                     /db_xref="TAIR:AT4G36880"
     CDS             100..1230
                     /gene="CP1"
                     /locus_tag="AT4G36880"
                     /gene_synonym="AP22.67; AP22_67; cysteine proteinase1;
                     RD21A-LIKE PROTEASE1; RDL1"
                     /inference="Similar to RNA sequence,
                     EST:INSD:R84153.1,INSD:BP606289.1,INSD:AU228598.1,
                     INSD:AU237525.1,INSD:EH820043.1,INSD:BP811422.1,
                     INSD:EH914574.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:AK229031.1,INSD:AY043294.1"
                     /note="cysteine proteinase1 (CP1); FUNCTIONS IN:
                     cysteine-type peptidase activity, cysteine-type
                     endopeptidase activity; INVOLVED IN: proteolysis, response
                     to gibberellin stimulus, response to red light; LOCATED
                     IN: endomembrane system; EXPRESSED IN: 17 plant
                     structures; EXPRESSED DURING: 8 growth stages; CONTAINS
                     InterPro DOMAIN/s: Proteinase inhibitor I29, cathepsin
                     propeptide (InterPro:IPR013201), Peptidase C1A, papain
                     (InterPro:IPR013128), Peptidase C1A, papain C-terminal
                     (InterPro:IPR000668), Peptidase, cysteine peptidase active
                     site (InterPro:IPR000169); BEST Arabidopsis thaliana
                     protein match is: Granulin repeat cysteine protease family
                     protein (TAIR:AT5G43060.1); Has 30201 Blast hits to 17322
                     proteins in 780 species: Archae - 12; Bacteria - 1396;
                     Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
                     Other Eukaryotes - 2996 (source: NCBI BLink)."
                     /codon_start=1
                     /product="cysteine proteinase1"
                     /protein_id="NP_195406.2"
                     /db_xref="GeneID:829841"
                     /db_xref="TAIR:AT4G36880"
                     /db_xref="Araport:AT4G36880"
                     /translation="MAPSTKVLSLLLLYVVVSLASGDESIINDHLQLPSDGKWRTDEE
                     VRSIYLQWSAEHGKTNNNNNGIINDQDKRFNIFKDNLRFIDLHNENNKNATYKLGLTK
                     FTDLTNDEYRKLYLGARTEPARRIAKAKNVNQKYSAAVNGKEVPETVDWRQKGAVNPI
                     KDQGTCGSCWAFSTTAAVEGINKIVTGELISLSEQELVDCDKSYNQGCNGGLMDYAFQ
                     FIMKNGGLNTEKDYPYRGFGGKCNSFLKNSRVVSIDGYEDVPTKDETALKKAISYQPV
                     SVAIEAGGRIFQHYQSGIFTGSCGTNLDHAVVAVGYGSENGVDYWIVRNSWGPRWGEE
                     GYIRMERNLAASKSGKCGIAVEASYPVKYSPNPVRGNTISSV"
ORIGIN      
        1 aataccaaat tttttgttat aaatagtccc acagttttct catcctccag aaaaacaaat
       61 catcccaagt aatcctaact atacaaaaca cataacaata tggctccttc aacaaaagtt
      121 ctctctttac ttctcttata tgtcgtcgtg tcattagcct ccggtgatga gtccatcatc
      181 aacgaccatc tccaacttcc atcggacggc aagtggagaa ccgatgaaga agtgaggtcc
      241 atctacttac aatggtccgc agaacacggg aaaactaaca acaacaacaa cggtatcatc
      301 aacgaccaag acaaaagatt caatattttc aaagacaact taagattcat cgatctacac
      361 aacgaaaaca acaagaacgc tacttacaag cttggtctca ccaaatttac cgatctcact
      421 aacgatgagt accgcaagtt gtacctcggg gcaagaactg agcccgcccg ccgcatcgct
      481 aaggccaaga atgtcaacca gaaatactca gccgctgtaa acggcaagga ggttccagag
      541 acggttgatt ggagacagaa aggagccgtt aaccccatca aagaccaagg aacttgcgga
      601 agttgttggg cgttttcgac tactgcagca gtagaaggta taaacaagat cgtaacagga
      661 gaactcatat ctctatcaga acaagaactt gttgactgcg acaaatccta caatcaaggt
      721 tgcaacggcg gtttaatgga ctacgctttt caattcatca tgaaaaatgg tggcttaaac
      781 actgagaaag attatcctta ccgtggattc ggcggaaaat gcaattcttt cttgaagaat
      841 tctagagttg tgagtattga tgggtacgaa gatgttccta ctaaagacga gactgcgttg
      901 aagaaagcta tttcatacca accggttagt gtagctattg aagccggtgg aagaattttt
      961 caacattacc aatcgggtat ttttaccgga agttgtggta caaatcttga tcacgcggtg
     1021 gttgctgtcg ggtacggatc agagaacggt gttgactact ggattgtaag gaactcttgg
     1081 ggtccacgtt ggggtgagga aggttacatt agaatggaga gaaacttggc agcctccaaa
     1141 tccggtaagt gtgggattgc ggttgaagcc tcgtacccgg ttaagtacag cccaaacccg
     1201 gttcgtggaa atactatcag cagtgtttga aatcaagacg ctcgataaac atttgggatt
     1261 cttataactg aatttaatct cgtattgtta ttattgtttg tatgtatagt atttcaacaa
     1321 caatttcaaa aattagttga ttcatcataa ggatataaaa tttataaatc cttatgtcga
     1381 tcaatttctt ttttattcaa agaaagattg tttgcttgtt ttatgtatta agagaaatat
     1441 aataaaatga tatatttctt aagagcca
//
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Reference sequence information

More about the CP1 gene

  • CP1 gene
    Also Known As: AT4G36880, AP22.67, AP2...

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