LOCUS NM_114597 460 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana uncharacterized protein (AT3G47295), mRNA.
ACCESSION NM_114597
VERSION NM_114597.2
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 460)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 460)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 460)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 460)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
On May 13, 2003 this sequence version replaced NM_114597.1.
FEATURES Location/Qualifiers
source 1..460
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..460
/locus_tag="AT3G47295"
/db_xref="Araport:AT3G47295"
/db_xref="GeneID:823883"
/db_xref="TAIR:AT3G47295"
CDS 105..320
/locus_tag="AT3G47295"
/inference="Similar to RNA sequence,
EST:INSD:EL303771.1,INSD:ES145712.1,INSD:ES134724.1,
INSD:BP634962.1,INSD:DR231354.1,INSD:EG517943.1,
INSD:EL182911.1,INSD:EH926308.1,INSD:EL254163.1,
INSD:DR231355.1,INSD:EL297960.1,INSD:ES159598.1,
INSD:AU229658.1,INSD:DR381266.1,INSD:EH924288.1,
INSD:EL250692.1,INSD:DR231357.1,INSD:EL062443.1,
INSD:EL056358.1,INSD:ES163729.1,INSD:EL156915.1,
INSD:EH824790.1,INSD:AV796527.1,INSD:EL194733.1,
INSD:EH828104.1,INSD:EL290726.1,INSD:EH887567.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY085556.1,INSD:BX822322.1,INSD:BT004922.1,
INSD:AK117627.1"
/note="unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown; LOCATED
IN: endomembrane system; EXPRESSED IN: 22 plant
structures; EXPRESSED DURING: 13 growth stages; Has 13
Blast hits to 13 proteins in 2 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink)."
/codon_start=1
/product="uncharacterized protein"
/protein_id="NP_566890.1"
/db_xref="GeneID:823883"
/db_xref="TAIR:AT3G47295"
/db_xref="Araport:AT3G47295"
/translation="MSFGTRLLLFLILTLPLVTSSSPNTLHVSGIVKTGTTSRFLMMT
IEDYDDPSANTRHDPSVPTNAKADTTP"
ORIGIN
1 aaactgcaat tggataacca caaccagaat cgattttgaa tcatcatttc tataaatata
61 tacgactcat acatacatat acatacctct taaacaaaac tgagatgagt tttggaactc
121 gtcttctttt gtttctcata ctaacacttc cacttgtaac atcttcatcc ccaaacactc
181 ttcatgtttc aggaattgtg aagacaggga ctacaagtag attcttgatg atgaccatcg
241 aggattatga cgatccatct gcaaacacca gacacgatcc cagcgttccg accaatgcaa
301 aggctgacac aacaccttaa aactcttctg agtttacttg tttagtctat gttgaataaa
361 taaatatata tataataatc tctctctttt gactgagctg aattctccat ttcctatact
421 ctgtatatta ttcatctgag tatcaaagca aaaccttaag
//