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Arabidopsis thaliana uncharacterized protein (AT3G47295), mRNA

NCBI Reference Sequence: NM_114597.2

FASTA Graphics 

LOCUS       NM_114597                460 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana uncharacterized protein (AT3G47295), mRNA.
ACCESSION   NM_114597
VERSION     NM_114597.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 460)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 460)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 460)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On May 13, 2003 this sequence version replaced NM_114597.1.
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..460
                     /locus_tag="AT3G47295"
                     /db_xref="Araport:AT3G47295"
                     /db_xref="GeneID:823883"
                     /db_xref="TAIR:AT3G47295"
     CDS             105..320
                     /locus_tag="AT3G47295"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EL303771.1,INSD:ES145712.1,INSD:ES134724.1,
                     INSD:BP634962.1,INSD:DR231354.1,INSD:EG517943.1,
                     INSD:EL182911.1,INSD:EH926308.1,INSD:EL254163.1,
                     INSD:DR231355.1,INSD:EL297960.1,INSD:ES159598.1,
                     INSD:AU229658.1,INSD:DR381266.1,INSD:EH924288.1,
                     INSD:EL250692.1,INSD:DR231357.1,INSD:EL062443.1,
                     INSD:EL056358.1,INSD:ES163729.1,INSD:EL156915.1,
                     INSD:EH824790.1,INSD:AV796527.1,INSD:EL194733.1,
                     INSD:EH828104.1,INSD:EL290726.1,INSD:EH887567.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:AY085556.1,INSD:BX822322.1,INSD:BT004922.1,
                     INSD:AK117627.1"
                     /note="unknown protein; FUNCTIONS IN: molecular_function
                     unknown; INVOLVED IN: biological_process unknown; LOCATED
                     IN: endomembrane system; EXPRESSED IN: 22 plant
                     structures; EXPRESSED DURING: 13 growth stages; Has 13
                     Blast hits to 13 proteins in 2 species: Archae - 0;
                     Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 13; Viruses
                     - 0; Other Eukaryotes - 0 (source: NCBI BLink)."
                     /codon_start=1
                     /product="uncharacterized protein"
                     /protein_id="NP_566890.1"
                     /db_xref="GeneID:823883"
                     /db_xref="TAIR:AT3G47295"
                     /db_xref="Araport:AT3G47295"
                     /translation="MSFGTRLLLFLILTLPLVTSSSPNTLHVSGIVKTGTTSRFLMMT
                     IEDYDDPSANTRHDPSVPTNAKADTTP"
ORIGIN      
        1 aaactgcaat tggataacca caaccagaat cgattttgaa tcatcatttc tataaatata
       61 tacgactcat acatacatat acatacctct taaacaaaac tgagatgagt tttggaactc
      121 gtcttctttt gtttctcata ctaacacttc cacttgtaac atcttcatcc ccaaacactc
      181 ttcatgtttc aggaattgtg aagacaggga ctacaagtag attcttgatg atgaccatcg
      241 aggattatga cgatccatct gcaaacacca gacacgatcc cagcgttccg accaatgcaa
      301 aggctgacac aacaccttaa aactcttctg agtttacttg tttagtctat gttgaataaa
      361 taaatatata tataataatc tctctctttt gactgagctg aattctccat ttcctatact
      421 ctgtatatta ttcatctgag tatcaaagca aaaccttaag
//
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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for uncharacterized protein AT3G47295 (NP_566890.1).

More about the AT3G47295 gene

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