LOCUS NM_111463 872 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana Low temperature and salt responsive protein
family (RCI2B), mRNA.
ACCESSION NM_111463
VERSION NM_111463.2
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 872)
AUTHORS Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
Yamada,M., Yasuda,M. and Tabata,S.
CONSRTM European Union Chromosome 3 Arabidopsis Sequencing Consortium;
Institute for Genomic Research; Kazusa DNA Research Institute
TITLE Sequence and analysis of chromosome 3 of the plant Arabidopsis
thaliana
JOURNAL Nature 408 (6814), 820-822 (2000)
PUBMED 11130713
REFERENCE 2 (bases 1 to 872)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 872)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 872)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003074).
On Sep 12, 2016 this sequence version replaced NM_111463.1.
FEATURES Location/Qualifiers
source 1..872
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="3"
/ecotype="Columbia"
gene 1..872
/gene="RCI2B"
/locus_tag="AT3G05890"
/gene_synonym="F2O10.15; F2O10_15; RARE-COLD-INDUCIBLE 2B"
/db_xref="Araport:AT3G05890"
/db_xref="GeneID:819758"
/db_xref="TAIR:AT3G05890"
CDS 356..520
/gene="RCI2B"
/locus_tag="AT3G05890"
/gene_synonym="F2O10.15; F2O10_15; RARE-COLD-INDUCIBLE 2B"
/inference="Similar to RNA sequence,
EST:INSD:EH873317.1,INSD:AI100644.1,INSD:T21797.1,
INSD:BP562908.2,INSD:ES211249.1,INSD:EH957140.1,
INSD:EL209663.1,INSD:DR350535.1,INSD:EL309211.1,
INSD:EH859768.1,INSD:EL247338.1,INSD:CB265219.1,
INSD:DR350531.1,INSD:Z26235.1,INSD:DR350534.1,
INSD:DR350532.1,INSD:EH898245.1,INSD:EL211916.1,
INSD:ES180167.1,INSD:T04126.1,INSD:DR350533.1,
INSD:DR350537.1,INSD:EL186310.1,INSD:BP800437.1,
INSD:ES212930.1,INSD:T04735.1,INSD:DR350536.1,
INSD:EL006189.1"
/inference="Similar to RNA sequence,
mRNA:INSD:AY084701.1,INSD:BT026006.1,INSD:AK176253.1,
INSD:AK228716.1,INSD:AF122006.1"
/note="RARE-COLD-INDUCIBLE 2B (RCI2B); CONTAINS InterPro
DOMAIN/s: Uncharacterised protein family UPF0057
(InterPro:IPR000612); BEST Arabidopsis thaliana protein
match is: Low temperature and salt responsive protein
family (TAIR:AT3G05880.1); Has 1391 Blast hits to 1391
proteins in 471 species: Archae - 0; Bacteria - 653;
Metazoa - 37; Fungi - 280; Plants - 382; Viruses - 0;
Other Eukaryotes - 39 (source: NCBI BLink)."
/codon_start=1
/product="Low temperature and salt responsive protein
family"
/protein_id="NP_187240.1"
/db_xref="GeneID:819758"
/db_xref="TAIR:AT3G05890"
/db_xref="Araport:AT3G05890"
/translation="MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPG
ILYALYIITK"
ORIGIN
1 agagtaacta aaaacataag aaaaaactag attagtaata gagaatatta aatttaatct
61 ttgattaact tgtttgatta agttctacat accgcataat gcccaaagat aaaggaaaat
121 ataattaaaa tcatttagat ttccccaaaa gcaattttta aaaggaaaaa aaaataaaac
181 ctattactcc tacaagaaag ggagaagtta cagagtaacc accacgtgga taggctcata
241 aaatatagag atctcgggtc tatatatata taggagagta gagaaagtcc ataatcatca
301 agatttagtg ttaaagcata ataaatattt tctttgaaat ttgaagagct tgaaaatgag
361 tacagccact ttcgtagaga ttattcttgc tatcatcttg cctcctctcg gcgtctttct
421 caaatttggt tgcaaggttg agttttggat atgtttgatt ttgacgctgt ttggttatct
481 tcccggaatc ctttacgctc tttatatcat caccaagtga tttttcctat ctcctctgtt
541 ctttcctctt gctcctcgaa gaacagctgt ttcgtcgtgc tcttctccct ttgggactga
601 ttcatcattt attttatgtt atgagcaatt gtattctcat tgttgtattt gcattattgt
661 atactttctg ctgatatcaa gaaaaaatcg ttggtttatg tgaggaattt atttatttcg
721 tttaatttgt acaattggta aaatgttgca atgagcaggt ttggattccg gaccaccatt
781 aaaaaaattt aaaaccaacg ttatataaat ccatggtcac atgtctcgtc tcatcaccaa
841 caaatttgca ccataagtac tcacgtggtc ca
//