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Arabidopsis thaliana Low temperature and salt responsive protein family (RCI2B), mRNA

NCBI Reference Sequence: NM_111463.2

FASTA Graphics 

LOCUS       NM_111463                872 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana Low temperature and salt responsive protein
            family (RCI2B), mRNA.
ACCESSION   NM_111463
VERSION     NM_111463.2
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 872)
  AUTHORS   Salanoubat,M., Lemcke,K., Rieger,M., Ansorge,W., Unseld,M.,
            Fartmann,B., Valle,G., Blocker,H., Perez-Alonso,M., Obermaier,B.,
            Delseny,M., Boutry,M., Grivell,L.A., Mache,R., Puigdomenech,P., De
            Simone,V., Choisne,N., Artiguenave,F., Robert,C., Brottier,P.,
            Wincker,P., Cattolico,L., Weissenbach,J., Saurin,W., Quetier,F.,
            Schafer,M., Muller-Auer,S., Gabel,C., Fuchs,M., Benes,V.,
            Wurmbach,E., Drzonek,H., Erfle,H., Jordan,N., Bangert,S.,
            Wiedelmann,R., Kranz,H., Voss,H., Holland,R., Brandt,P.,
            Nyakatura,G., Vezzi,A., D'Angelo,M., Pallavicini,A., Toppo,S.,
            Simionati,B., Conrad,A., Hornischer,K., Kauer,G., Lohnert,T.H.,
            Nordsiek,G., Reichelt,J., Scharfe,M., Schon,O., Bargues,M.,
            Terol,J., Climent,J., Navarro,P., Collado,C., Perez-Perez,A.,
            Ottenwalder,B., Duchemin,D., Cooke,R., Laudie,M., Berger-Llauro,C.,
            Purnelle,B., Masuy,D., de Haan,M., Maarse,A.C., Alcaraz,J.P.,
            Cottet,A., Casacuberta,E., Monfort,A., Argiriou,A., flores,M.,
            Liguori,R., Vitale,D., Mannhaupt,G., Haase,D., Schoof,H., Rudd,S.,
            Zaccaria,P., Mewes,H.W., Mayer,K.F., Kaul,S., Town,C.D., Koo,H.L.,
            Tallon,L.J., Jenkins,J., Rooney,T., Rizzo,M., Walts,A.,
            Utterback,T., Fujii,C.Y., Shea,T.P., Creasy,T.H., Haas,B.,
            Maiti,R., Wu,D., Peterson,J., Van Aken,S., Pai,G., Militscher,J.,
            Sellers,P., Gill,J.E., Feldblyum,T.V., Preuss,D., Lin,X.,
            Nierman,W.C., Salzberg,S.L., White,O., Venter,J.C., Fraser,C.M.,
            Kaneko,T., Nakamura,Y., Sato,S., Kato,T., Asamizu,E., Sasamoto,S.,
            Kimura,T., Idesawa,K., Kawashima,K., Kishida,Y., Kiyokawa,C.,
            Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S.,
            Nakazaki,N., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A.,
            Yamada,M., Yasuda,M. and Tabata,S.
  CONSRTM   European Union Chromosome 3 Arabidopsis Sequencing Consortium;
            Institute for Genomic Research; Kazusa DNA Research Institute
  TITLE     Sequence and analysis of chromosome 3 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 408 (6814), 820-822 (2000)
   PUBMED   11130713
REFERENCE   2  (bases 1 to 872)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 872)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 872)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003074).
            
            On Sep 12, 2016 this sequence version replaced NM_111463.1.
FEATURES             Location/Qualifiers
     source          1..872
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="3"
                     /ecotype="Columbia"
     gene            1..872
                     /gene="RCI2B"
                     /locus_tag="AT3G05890"
                     /gene_synonym="F2O10.15; F2O10_15; RARE-COLD-INDUCIBLE 2B"
                     /db_xref="Araport:AT3G05890"
                     /db_xref="GeneID:819758"
                     /db_xref="TAIR:AT3G05890"
     CDS             356..520
                     /gene="RCI2B"
                     /locus_tag="AT3G05890"
                     /gene_synonym="F2O10.15; F2O10_15; RARE-COLD-INDUCIBLE 2B"
                     /inference="Similar to RNA sequence,
                     EST:INSD:EH873317.1,INSD:AI100644.1,INSD:T21797.1,
                     INSD:BP562908.2,INSD:ES211249.1,INSD:EH957140.1,
                     INSD:EL209663.1,INSD:DR350535.1,INSD:EL309211.1,
                     INSD:EH859768.1,INSD:EL247338.1,INSD:CB265219.1,
                     INSD:DR350531.1,INSD:Z26235.1,INSD:DR350534.1,
                     INSD:DR350532.1,INSD:EH898245.1,INSD:EL211916.1,
                     INSD:ES180167.1,INSD:T04126.1,INSD:DR350533.1,
                     INSD:DR350537.1,INSD:EL186310.1,INSD:BP800437.1,
                     INSD:ES212930.1,INSD:T04735.1,INSD:DR350536.1,
                     INSD:EL006189.1"
                     /inference="Similar to RNA sequence,
                     mRNA:INSD:AY084701.1,INSD:BT026006.1,INSD:AK176253.1,
                     INSD:AK228716.1,INSD:AF122006.1"
                     /note="RARE-COLD-INDUCIBLE 2B (RCI2B); CONTAINS InterPro
                     DOMAIN/s: Uncharacterised protein family UPF0057
                     (InterPro:IPR000612); BEST Arabidopsis thaliana protein
                     match is: Low temperature and salt responsive protein
                     family (TAIR:AT3G05880.1); Has 1391 Blast hits to 1391
                     proteins in 471 species: Archae - 0; Bacteria - 653;
                     Metazoa - 37; Fungi - 280; Plants - 382; Viruses - 0;
                     Other Eukaryotes - 39 (source: NCBI BLink)."
                     /codon_start=1
                     /product="Low temperature and salt responsive protein
                     family"
                     /protein_id="NP_187240.1"
                     /db_xref="GeneID:819758"
                     /db_xref="TAIR:AT3G05890"
                     /db_xref="Araport:AT3G05890"
                     /translation="MSTATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPG
                     ILYALYIITK"
ORIGIN      
        1 agagtaacta aaaacataag aaaaaactag attagtaata gagaatatta aatttaatct
       61 ttgattaact tgtttgatta agttctacat accgcataat gcccaaagat aaaggaaaat
      121 ataattaaaa tcatttagat ttccccaaaa gcaattttta aaaggaaaaa aaaataaaac
      181 ctattactcc tacaagaaag ggagaagtta cagagtaacc accacgtgga taggctcata
      241 aaatatagag atctcgggtc tatatatata taggagagta gagaaagtcc ataatcatca
      301 agatttagtg ttaaagcata ataaatattt tctttgaaat ttgaagagct tgaaaatgag
      361 tacagccact ttcgtagaga ttattcttgc tatcatcttg cctcctctcg gcgtctttct
      421 caaatttggt tgcaaggttg agttttggat atgtttgatt ttgacgctgt ttggttatct
      481 tcccggaatc ctttacgctc tttatatcat caccaagtga tttttcctat ctcctctgtt
      541 ctttcctctt gctcctcgaa gaacagctgt ttcgtcgtgc tcttctccct ttgggactga
      601 ttcatcattt attttatgtt atgagcaatt gtattctcat tgttgtattt gcattattgt
      661 atactttctg ctgatatcaa gaaaaaatcg ttggtttatg tgaggaattt atttatttcg
      721 tttaatttgt acaattggta aaatgttgca atgagcaggt ttggattccg gaccaccatt
      781 aaaaaaattt aaaaccaacg ttatataaat ccatggtcac atgtctcgtc tcatcaccaa
      841 caaatttgca ccataagtac tcacgtggtc ca
//
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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for Low temperature and salt responsive protein family (NP_187240.1).

More about the RCI2B gene

  • RCI2B gene
    Also Known As: AT3G05890, F2O10.15, F2...

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