LOCUS NM_129819 2827 bp mRNA linear PLN 20-OCT-2022
DEFINITION Arabidopsis thaliana tetratricopetide-repeat thioredoxin-like 3
(TTL3), mRNA.
ACCESSION NM_129819
VERSION NM_129819.3
DBLINK BioProject: PRJNA116
BioSample: SAMN03081427
KEYWORDS RefSeq.
SOURCE Arabidopsis thaliana (thale cress)
ORGANISM Arabidopsis thaliana
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
Camelineae; Arabidopsis.
REFERENCE 1 (bases 1 to 2827)
AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
Venter,J.C.
TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis
thaliana
JOURNAL Nature 402 (6763), 761-768 (1999)
PUBMED 10617197
REFERENCE 2 (bases 1 to 2827)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 3 (bases 1 to 2827)
AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
Vaughn,M. and Town,C.D.
TITLE Direct Submission
JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
9704 Medical Center Dr, Rockville, MD 20850, USA
REMARK Protein update by submitter
REFERENCE 4 (bases 1 to 2827)
AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
CONSRTM TAIR
TITLE Direct Submission
JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
Institution, 260 Panama Street, Stanford, CA, USA
COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
This record is derived from an annotated genomic sequence
(NC_003071).
On Sep 12, 2016 this sequence version replaced NM_129819.2.
FEATURES Location/Qualifiers
source 1..2827
/organism="Arabidopsis thaliana"
/mol_type="mRNA"
/db_xref="taxon:3702"
/chromosome="2"
/ecotype="Columbia"
gene 1..2827
/gene="TTL3"
/locus_tag="AT2G42580"
/gene_synonym="F14N22.15; F14N22_15;
tetratricopetide-repeat thioredoxin-like 3;
VHI-INTERACTING TPR CONTAINING PROTEIN; VIT"
/note="Encodes a member of the TTL family and contains a
thioredoxin like domain and three tandom TPRs. Interacts
physically with BRL2/VH1 and appears to play a role in
brassiosteroid and auxin signaling. Belongs to one of the
36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR)
proteins (Prasad 2010, Pubmed ID: 20856808) with potential
to interact with Hsp90/Hsp70 as co-chaperones. The TTL
family is required for osmotic stress tolerance and male
sporogenesis."
/db_xref="Araport:AT2G42580"
/db_xref="GeneID:818858"
/db_xref="TAIR:AT2G42580"
CDS 377..2452
/gene="TTL3"
/locus_tag="AT2G42580"
/gene_synonym="F14N22.15; F14N22_15;
tetratricopetide-repeat thioredoxin-like 3;
VHI-INTERACTING TPR CONTAINING PROTEIN; VIT"
/inference="Similar to RNA sequence,
EST:INSD:BP808475.1,INSD:ES065215.1,INSD:DR253132.1,
INSD:BP657157.1,INSD:DR253130.1,INSD:EL040852.1,
INSD:DR253131.1,INSD:EL225853.1,INSD:BP613745.1,
INSD:DR253134.1,INSD:EL337480.1,INSD:ES177558.1,
INSD:BE521348.1,INSD:ES099500.1,INSD:DR261253.1,
INSD:AV797415.1,INSD:BE528747.1,INSD:T13832.1,
INSD:EL102339.1,INSD:BP612472.1,INSD:DR253129.1,
INSD:BP863383.1,INSD:BX834436.1,INSD:DR261251.1,
INSD:ES084394.1,INSD:AV807282.1,INSD:AV808675.1,
INSD:EH842542.1,INSD:ES160020.1,INSD:DR253133.1,
INSD:DR355825.1,INSD:EL077090.1,INSD:BP614372.1,
INSD:EH834652.1,INSD:ES189092.1,INSD:ES102433.1,
INSD:DR253135.1,INSD:EH884181.1,INSD:EH941612.1,
INSD:AV827162.1,INSD:ES144750.1,INSD:BX837492.1,
INSD:AV813064.1,INSD:DR261252.1,INSD:BE521347.1,
INSD:DR355824.1"
/inference="similar to RNA sequence,
mRNA:INSD:AF367321.1,INSD:BX819721.1,INSD:AY143941.1"
/note="tetratricopetide-repeat thioredoxin-like 3 (TTL3);
FUNCTIONS IN: binding; INVOLVED IN: brassinosteroid
mediated signaling pathway, auxin mediated signaling
pathway, leaf vascular tissue pattern formation; EXPRESSED
IN: 22 plant structures; EXPRESSED DURING: 13 growth
stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone,
heat shock protein, Hsp40, DnaJ (InterPro:IPR015609),
Tetratricopeptide TPR-1 (InterPro:IPR001440), Thioredoxin
fold (InterPro:IPR012335), Tetratricopeptide-like helical
(InterPro:IPR011990), Thioredoxin domain
(InterPro:IPR013766), Tetratricopeptide repeat-containing
(InterPro:IPR013026), Thioredoxin-like fold
(InterPro:IPR012336), Tetratricopeptide repeat
(InterPro:IPR019734); BEST Arabidopsis thaliana protein
match is: tetratricopetide-repeat thioredoxin-like 4
(TAIR:AT3G58620.1); Has 21212 Blast hits to 11305 proteins
in 1032 species: Archae - 491; Bacteria - 3820; Metazoa -
5890; Fungi - 2224; Plants - 2157; Viruses - 6; Other
Eukaryotes - 6624 (source: NCBI BLink)."
/codon_start=1
/product="tetratricopetide-repeat thioredoxin-like 3"
/protein_id="NP_565976.1"
/db_xref="Araport:AT2G42580"
/db_xref="GeneID:818858"
/db_xref="TAIR:AT2G42580"
/translation="MSHSRRLSLEPAIDSITGRFRDLQRNDDDVNKPDFRELDLGSPV
STLMPRGSASSSAAATPTSSSGSSGSASGKPSVSSQMAKRLDDAYKSHSGELSSPGSG
MPTTTRILKPGHRRSSSTGTPLIFSGSSFTSATSHTSPQGGGSGATSAVSPNTGVLPA
GNICPSGRILKTGMASRTSSRTETLCTGTGNYGHGNVVRSGGGGGTSGKAVRVAENGE
NPEELKRMGNDMYRRGSFSEALSLYDRAILISPGNAAYRSNRAAALTALRRLGEAVKE
CLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSGQCPDQADLQRLQTLEKHLR
RCWEARKIGDWKTAIKETDAAIANGADSSPQLVACKAEAFLRLKQIEDSDFCVSCIPR
LDHHYHSQPQVKLFGMVVEAYVLCIQAQVDMALGRFENAVVKAERAAMLDQTNPEVVS
VLNNVKMVVRARTRGNELFSSGRFSEACVAYGDGLKQDDSNSVLYCNRAACWYKLGLW
EKSVEDCNHALKSQPSYIKALLRRAASYGKLGRWEDAVKDYEFLRRELPGDSEVAESL
ERAKTVLMNRSQESKSLGFNNEVEAVSTLDKFKKSVALPGVSVFHFKSSSNRQCEEIS
PFINTLCLRYPLVHFFMVDVEESMALAKAESIRKVPTFKMYKNGDKVKEMVCPSHQFL
EDSIKHFLL"
ORIGIN
1 attaataata aattcgataa atcaccgtat tattttcttc aacgacaagt agccgtgaag
61 acacgggagc gaagagagat aaacagaaga tgaagaagaa gatcaatgtc ataatcttca
121 gggagataaa tccgtaatct ttattaatca aggttaatcc tttttttttt cttcatctta
181 attctttgcg tcttcctttt ctatttatca cgagatctgt ctttcttttt cctcttcttt
241 ctctctcttc tctctgaaga cagtacttgt ttctgtccgg cgttaaaagc ttcggtggtg
301 gtctcttgac ttctctgaga agaagaaaag gaagctgagt ctcattttag attcagctca
361 cgaggaagtg acgacgatgt ctcattctag aagactttcg ttggaacctg ctatagattc
421 aatcactggt cgatttcgtg atttacagag aaatgatgat gacgtcaaca aacctgattt
481 tcgagaactc gatctaggtt ctcctgtttc taccttaatg ccacgtggct ctgcttcttc
541 ttccgctgct gcgactccta ctagcagctc tggctcttct ggctctgctt ctggtaaacc
601 gtcggtgagt tctcagatgg ctaaacggtt agatgatgct tacaagagtc attccggtga
661 gctttctagc cccggatccg gaatgccgac cacgacccgg attcttaaac cgggtcatag
721 aagatcttct tctactggca cgcctttgat cttctctggc tctagcttta cttcagcaac
781 gagtcacacc tcgccacaag gaggtggtag cggtgctacg tcggcagtgt ctcccaatac
841 tggcgtttta ccggcgggaa atatttgtcc gtcgggtcgg atcttgaaaa ctggaatggc
901 gtctcggact tcaagtagga ctgagactct atgcacagga actggtaatt acggacatgg
961 aaacgttgta cgcagcggcg gaggaggagg aaccagcgga aaggcggtga gagtggcgga
1021 gaatggcgaa aacccggagg agttgaagag aatggggaat gatatgtata ggagagggag
1081 tttctctgaa gctctgtcgc tttatgacag agcaattttg atttcaccgg gaaatgcagc
1141 ttacagaagc aaccgtgccg cggctttaac ggcattgagg cggttaggag aagccgttaa
1201 agaatgtctt gaagctgtta ggattgatcc ttcttactcc agagctcacc aaagacttgc
1261 ttctctctat ctcagattgg gtgaagctga gaatgcaaga cgtcacattt gtttttctgg
1321 tcaatgtccg gatcaagctg atctccaacg gctacagacg ctggagaagc atctccgacg
1381 atgctgggag gctcgaaaga ttggagattg gaaaaccgcg attaaggaaa ccgatgcagc
1441 cattgcaaac ggcgctgatt cgtctcctca gcttgtagct tgtaaagcag aagccttttt
1501 gcgtcttaag caaatagagg attcggattt ttgtgtatct tgcattccaa gattggatca
1561 tcattaccat tctcaaccgc aggtgaaact ctttggtatg gtagttgaag cttatgtgct
1621 ctgtatccaa gctcaagttg atatggcatt aggaagattt gagaatgcgg ttgtcaaggc
1681 agagagagct gcgatgcttg atcaaaccaa tcctgaggtt gtatcagttt taaacaatgt
1741 gaagatggtt gtgcgggcac gtactcgtgg taatgagcta tttagttcgg ggagattctc
1801 ggaagcgtgt gtagcttatg gagacggtct caagcaagat gactccaatt cggttttgta
1861 ctgcaacaga gcagcgtgtt ggtataagct cggtttgtgg gagaaatctg ttgaagattg
1921 taaccatgcg ctcaaaagcc agcctagtta catcaaggca cttctacgta gggctgcttc
1981 atatggaaag cttggtaggt gggaggatgc ggttaaagat tatgagttct tgagaagaga
2041 acttccagga gacagtgaag ttgcagagtc tctagagaga gcgaaaacag tgctaatgaa
2101 cagaagccaa gaatctaaaa gcctaggttt caataatgaa gttgaagcgg tttcgacttt
2161 ggataagttc aagaaatccg tagcacttcc cggtgtctct gtatttcatt tcaaatcatc
2221 atcaaaccga caatgcgaag aaatttctcc attcatcaac actttatgtc ttcggtatcc
2281 attagtacat ttctttatgg tggatgtgga ggagagcatg gcgttggcga aagcagagag
2341 tatcaggaaa gttccgacat ttaagatgta caagaatgga gataaagtga aggagatggt
2401 ttgtcctagc catcagtttc tagaggactc tataaagcat ttcctcttat gattgaaaaa
2461 gccctatcat cattatctgc ttccctatga ttcgatccga atagcctatt taaaagactc
2521 agaaagcatt ctatgtgaaa gatgggaaag agctcttctg tcaaattcaa caaactattc
2581 attctttctt cttattcgat tctaattctt ctttatttat tttttggagt ttggctctgc
2641 ttgctttggc atattacgta tgggtaaatg ttcgcaatga ttcaagaaat gcaagcttca
2701 ttatctattt acgcttggct tgtgtatgct agattattca ccacaccagt gaaagaaact
2761 gaacagagtt tactgtattt ggtgttgttg attcaatcag tgacagaata tgaatcagag
2821 agtaccg
//