U.S. flag

An official website of the United States government

Arabidopsis thaliana tetratricopetide-repeat thioredoxin-like 3 (TTL3), mRNA

NCBI Reference Sequence: NM_129819.3

FASTA Graphics 

LOCUS       NM_129819               2827 bp    mRNA    linear   PLN 20-OCT-2022
DEFINITION  Arabidopsis thaliana tetratricopetide-repeat thioredoxin-like 3
            (TTL3), mRNA.
ACCESSION   NM_129819
VERSION     NM_129819.3
DBLINK      BioProject: PRJNA116
            BioSample: SAMN03081427
KEYWORDS    RefSeq.
SOURCE      Arabidopsis thaliana (thale cress)
  ORGANISM  Arabidopsis thaliana
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae;
            Pentapetalae; rosids; malvids; Brassicales; Brassicaceae;
            Camelineae; Arabidopsis.
REFERENCE   1  (bases 1 to 2827)
  AUTHORS   Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D.,
            Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V.,
            Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L.,
            Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L.,
            Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H.,
            Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D.,
            Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and
            Venter,J.C.
  TITLE     Sequence and analysis of chromosome 2 of the plant Arabidopsis
            thaliana
  JOURNAL   Nature 402 (6763), 761-768 (1999)
   PUBMED   10617197
REFERENCE   2  (bases 1 to 2827)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (bases 1 to 2827)
  AUTHORS   Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M.,
            Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R.,
            Vaughn,M. and Town,C.D.
  TITLE     Direct Submission
  JOURNAL   Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute,
            9704 Medical Center Dr, Rockville, MD 20850, USA
  REMARK    Protein update by submitter
REFERENCE   4  (bases 1 to 2827)
  AUTHORS   Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E.
  CONSRTM   TAIR
  TITLE     Direct Submission
  JOURNAL   Submitted (18-FEB-2011) Department of Plant Biology, Carnegie
            Institution, 260 Panama Street, Stanford, CA, USA
COMMENT     REVIEWED REFSEQ: This record has been curated by TAIR and Araport.
            This record is derived from an annotated genomic sequence
            (NC_003071).
            
            On Sep 12, 2016 this sequence version replaced NM_129819.2.
FEATURES             Location/Qualifiers
     source          1..2827
                     /organism="Arabidopsis thaliana"
                     /mol_type="mRNA"
                     /db_xref="taxon:3702"
                     /chromosome="2"
                     /ecotype="Columbia"
     gene            1..2827
                     /gene="TTL3"
                     /locus_tag="AT2G42580"
                     /gene_synonym="F14N22.15; F14N22_15;
                     tetratricopetide-repeat thioredoxin-like 3;
                     VHI-INTERACTING TPR CONTAINING PROTEIN; VIT"
                     /note="Encodes a member of the TTL family and contains a
                     thioredoxin like domain and three tandom TPRs. Interacts
                     physically with BRL2/VH1 and appears to play a role in
                     brassiosteroid and auxin signaling. Belongs to one of the
                     36 carboxylate clamp (CC)-tetratricopeptide repeat (TPR)
                     proteins (Prasad 2010, Pubmed ID: 20856808) with potential
                     to interact with Hsp90/Hsp70 as co-chaperones. The TTL
                     family is required for osmotic stress tolerance and male
                     sporogenesis."
                     /db_xref="Araport:AT2G42580"
                     /db_xref="GeneID:818858"
                     /db_xref="TAIR:AT2G42580"
     CDS             377..2452
                     /gene="TTL3"
                     /locus_tag="AT2G42580"
                     /gene_synonym="F14N22.15; F14N22_15;
                     tetratricopetide-repeat thioredoxin-like 3;
                     VHI-INTERACTING TPR CONTAINING PROTEIN; VIT"
                     /inference="Similar to RNA sequence,
                     EST:INSD:BP808475.1,INSD:ES065215.1,INSD:DR253132.1,
                     INSD:BP657157.1,INSD:DR253130.1,INSD:EL040852.1,
                     INSD:DR253131.1,INSD:EL225853.1,INSD:BP613745.1,
                     INSD:DR253134.1,INSD:EL337480.1,INSD:ES177558.1,
                     INSD:BE521348.1,INSD:ES099500.1,INSD:DR261253.1,
                     INSD:AV797415.1,INSD:BE528747.1,INSD:T13832.1,
                     INSD:EL102339.1,INSD:BP612472.1,INSD:DR253129.1,
                     INSD:BP863383.1,INSD:BX834436.1,INSD:DR261251.1,
                     INSD:ES084394.1,INSD:AV807282.1,INSD:AV808675.1,
                     INSD:EH842542.1,INSD:ES160020.1,INSD:DR253133.1,
                     INSD:DR355825.1,INSD:EL077090.1,INSD:BP614372.1,
                     INSD:EH834652.1,INSD:ES189092.1,INSD:ES102433.1,
                     INSD:DR253135.1,INSD:EH884181.1,INSD:EH941612.1,
                     INSD:AV827162.1,INSD:ES144750.1,INSD:BX837492.1,
                     INSD:AV813064.1,INSD:DR261252.1,INSD:BE521347.1,
                     INSD:DR355824.1"
                     /inference="similar to RNA sequence,
                     mRNA:INSD:AF367321.1,INSD:BX819721.1,INSD:AY143941.1"
                     /note="tetratricopetide-repeat thioredoxin-like 3 (TTL3);
                     FUNCTIONS IN: binding; INVOLVED IN: brassinosteroid
                     mediated signaling pathway, auxin mediated signaling
                     pathway, leaf vascular tissue pattern formation; EXPRESSED
                     IN: 22 plant structures; EXPRESSED DURING: 13 growth
                     stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone,
                     heat shock protein, Hsp40, DnaJ (InterPro:IPR015609),
                     Tetratricopeptide TPR-1 (InterPro:IPR001440), Thioredoxin
                     fold (InterPro:IPR012335), Tetratricopeptide-like helical
                     (InterPro:IPR011990), Thioredoxin domain
                     (InterPro:IPR013766), Tetratricopeptide repeat-containing
                     (InterPro:IPR013026), Thioredoxin-like fold
                     (InterPro:IPR012336), Tetratricopeptide repeat
                     (InterPro:IPR019734); BEST Arabidopsis thaliana protein
                     match is: tetratricopetide-repeat thioredoxin-like 4
                     (TAIR:AT3G58620.1); Has 21212 Blast hits to 11305 proteins
                     in 1032 species: Archae - 491; Bacteria - 3820; Metazoa -
                     5890; Fungi - 2224; Plants - 2157; Viruses - 6; Other
                     Eukaryotes - 6624 (source: NCBI BLink)."
                     /codon_start=1
                     /product="tetratricopetide-repeat thioredoxin-like 3"
                     /protein_id="NP_565976.1"
                     /db_xref="Araport:AT2G42580"
                     /db_xref="GeneID:818858"
                     /db_xref="TAIR:AT2G42580"
                     /translation="MSHSRRLSLEPAIDSITGRFRDLQRNDDDVNKPDFRELDLGSPV
                     STLMPRGSASSSAAATPTSSSGSSGSASGKPSVSSQMAKRLDDAYKSHSGELSSPGSG
                     MPTTTRILKPGHRRSSSTGTPLIFSGSSFTSATSHTSPQGGGSGATSAVSPNTGVLPA
                     GNICPSGRILKTGMASRTSSRTETLCTGTGNYGHGNVVRSGGGGGTSGKAVRVAENGE
                     NPEELKRMGNDMYRRGSFSEALSLYDRAILISPGNAAYRSNRAAALTALRRLGEAVKE
                     CLEAVRIDPSYSRAHQRLASLYLRLGEAENARRHICFSGQCPDQADLQRLQTLEKHLR
                     RCWEARKIGDWKTAIKETDAAIANGADSSPQLVACKAEAFLRLKQIEDSDFCVSCIPR
                     LDHHYHSQPQVKLFGMVVEAYVLCIQAQVDMALGRFENAVVKAERAAMLDQTNPEVVS
                     VLNNVKMVVRARTRGNELFSSGRFSEACVAYGDGLKQDDSNSVLYCNRAACWYKLGLW
                     EKSVEDCNHALKSQPSYIKALLRRAASYGKLGRWEDAVKDYEFLRRELPGDSEVAESL
                     ERAKTVLMNRSQESKSLGFNNEVEAVSTLDKFKKSVALPGVSVFHFKSSSNRQCEEIS
                     PFINTLCLRYPLVHFFMVDVEESMALAKAESIRKVPTFKMYKNGDKVKEMVCPSHQFL
                     EDSIKHFLL"
ORIGIN      
        1 attaataata aattcgataa atcaccgtat tattttcttc aacgacaagt agccgtgaag
       61 acacgggagc gaagagagat aaacagaaga tgaagaagaa gatcaatgtc ataatcttca
      121 gggagataaa tccgtaatct ttattaatca aggttaatcc tttttttttt cttcatctta
      181 attctttgcg tcttcctttt ctatttatca cgagatctgt ctttcttttt cctcttcttt
      241 ctctctcttc tctctgaaga cagtacttgt ttctgtccgg cgttaaaagc ttcggtggtg
      301 gtctcttgac ttctctgaga agaagaaaag gaagctgagt ctcattttag attcagctca
      361 cgaggaagtg acgacgatgt ctcattctag aagactttcg ttggaacctg ctatagattc
      421 aatcactggt cgatttcgtg atttacagag aaatgatgat gacgtcaaca aacctgattt
      481 tcgagaactc gatctaggtt ctcctgtttc taccttaatg ccacgtggct ctgcttcttc
      541 ttccgctgct gcgactccta ctagcagctc tggctcttct ggctctgctt ctggtaaacc
      601 gtcggtgagt tctcagatgg ctaaacggtt agatgatgct tacaagagtc attccggtga
      661 gctttctagc cccggatccg gaatgccgac cacgacccgg attcttaaac cgggtcatag
      721 aagatcttct tctactggca cgcctttgat cttctctggc tctagcttta cttcagcaac
      781 gagtcacacc tcgccacaag gaggtggtag cggtgctacg tcggcagtgt ctcccaatac
      841 tggcgtttta ccggcgggaa atatttgtcc gtcgggtcgg atcttgaaaa ctggaatggc
      901 gtctcggact tcaagtagga ctgagactct atgcacagga actggtaatt acggacatgg
      961 aaacgttgta cgcagcggcg gaggaggagg aaccagcgga aaggcggtga gagtggcgga
     1021 gaatggcgaa aacccggagg agttgaagag aatggggaat gatatgtata ggagagggag
     1081 tttctctgaa gctctgtcgc tttatgacag agcaattttg atttcaccgg gaaatgcagc
     1141 ttacagaagc aaccgtgccg cggctttaac ggcattgagg cggttaggag aagccgttaa
     1201 agaatgtctt gaagctgtta ggattgatcc ttcttactcc agagctcacc aaagacttgc
     1261 ttctctctat ctcagattgg gtgaagctga gaatgcaaga cgtcacattt gtttttctgg
     1321 tcaatgtccg gatcaagctg atctccaacg gctacagacg ctggagaagc atctccgacg
     1381 atgctgggag gctcgaaaga ttggagattg gaaaaccgcg attaaggaaa ccgatgcagc
     1441 cattgcaaac ggcgctgatt cgtctcctca gcttgtagct tgtaaagcag aagccttttt
     1501 gcgtcttaag caaatagagg attcggattt ttgtgtatct tgcattccaa gattggatca
     1561 tcattaccat tctcaaccgc aggtgaaact ctttggtatg gtagttgaag cttatgtgct
     1621 ctgtatccaa gctcaagttg atatggcatt aggaagattt gagaatgcgg ttgtcaaggc
     1681 agagagagct gcgatgcttg atcaaaccaa tcctgaggtt gtatcagttt taaacaatgt
     1741 gaagatggtt gtgcgggcac gtactcgtgg taatgagcta tttagttcgg ggagattctc
     1801 ggaagcgtgt gtagcttatg gagacggtct caagcaagat gactccaatt cggttttgta
     1861 ctgcaacaga gcagcgtgtt ggtataagct cggtttgtgg gagaaatctg ttgaagattg
     1921 taaccatgcg ctcaaaagcc agcctagtta catcaaggca cttctacgta gggctgcttc
     1981 atatggaaag cttggtaggt gggaggatgc ggttaaagat tatgagttct tgagaagaga
     2041 acttccagga gacagtgaag ttgcagagtc tctagagaga gcgaaaacag tgctaatgaa
     2101 cagaagccaa gaatctaaaa gcctaggttt caataatgaa gttgaagcgg tttcgacttt
     2161 ggataagttc aagaaatccg tagcacttcc cggtgtctct gtatttcatt tcaaatcatc
     2221 atcaaaccga caatgcgaag aaatttctcc attcatcaac actttatgtc ttcggtatcc
     2281 attagtacat ttctttatgg tggatgtgga ggagagcatg gcgttggcga aagcagagag
     2341 tatcaggaaa gttccgacat ttaagatgta caagaatgga gataaagtga aggagatggt
     2401 ttgtcctagc catcagtttc tagaggactc tataaagcat ttcctcttat gattgaaaaa
     2461 gccctatcat cattatctgc ttccctatga ttcgatccga atagcctatt taaaagactc
     2521 agaaagcatt ctatgtgaaa gatgggaaag agctcttctg tcaaattcaa caaactattc
     2581 attctttctt cttattcgat tctaattctt ctttatttat tttttggagt ttggctctgc
     2641 ttgctttggc atattacgta tgggtaaatg ttcgcaatga ttcaagaaat gcaagcttca
     2701 ttatctattt acgcttggct tgtgtatgct agattattca ccacaccagt gaaagaaact
     2761 gaacagagtt tactgtattt ggtgttgttg attcaatcag tgacagaata tgaatcagag
     2821 agtaccg
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for tetratricopetide-repeat thioredoxin-like 3 (NP_565976.1).

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.