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Danio rerio tubulin, alpha 2 (tuba2), mRNA

NCBI Reference Sequence: NM_213030.1

FASTA Graphics 

LOCUS       NM_213030               3485 bp    mRNA    linear   VRT 16-SEP-2024
DEFINITION  Danio rerio tubulin, alpha 2 (tuba2), mRNA.
ACCESSION   NM_213030
VERSION     NM_213030.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 3485)
  AUTHORS   Venditti,M., Pedalino,C., Rosello,M., Fasano,G., Serafini,M.,
            Revenu,C., Del Bene,F., Tartaglia,M. and Lauri,A.
  TITLE     A minimally invasive fin scratching protocol for fast genotyping
            and early selection of zebrafish embryos
  JOURNAL   Sci Rep 12 (1), 22597 (2022)
   PUBMED   36585409
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3485)
  AUTHORS   Itoh,T., Inoue,S., Sun,X., Kusuda,R., Hibi,M. and Shimizu,T.
  TITLE     Cfdp1 controls the cell cycle and neural differentiation in the
            zebrafish cerebellum and retina
  JOURNAL   Dev Dyn 250 (11), 1618-1633 (2021)
   PUBMED   33987914
REFERENCE   3  (bases 1 to 3485)
  AUTHORS   Spreafico,M., Cafora,M., Bragato,C., Capitanio,D., Marasca,F.,
            Bodega,B., De Palma,C., Mora,M., Gelfi,C., Marozzi,A. and
            Pistocchi,A.
  TITLE     Targeting HDAC8 to ameliorate skeletal muscle differentiation in
            Duchenne muscular dystrophy
  JOURNAL   Pharmacol Res 170, 105750 (2021)
   PUBMED   34214631
REFERENCE   4  (bases 1 to 3485)
  AUTHORS   Saddala,M.S., Lennikov,A., Bouras,A. and Huang,H.
  TITLE     RNA-Seq reveals differential expression profiles and functional
            annotation of genes involved in retinal degeneration in Pde6c
            mutant Danio rerio
  JOURNAL   BMC Genomics 21 (1), 132 (2020)
   PUBMED   32033529
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3485)
  AUTHORS   Fei,Z., Bae,K., Parent,S.E., Wan,H., Goodwin,K., Theisen,U.,
            Tanentzapf,G. and Bruce,A.E.E.
  TITLE     A cargo model of yolk syncytial nuclear migration during zebrafish
            epiboly
  JOURNAL   Development 146 (1) (2019)
   PUBMED   30509968
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 3485)
  AUTHORS   Elkon,R., Milon,B., Morrison,L., Shah,M., Vijayakumar,S.,
            Racherla,M., Leitch,C.C., Silipino,L., Hadi,S., Weiss-Gayet,M.,
            Barras,E., Schmid,C.D., Ait-Lounis,A., Barnes,A., Song,Y.,
            Eisenman,D.J., Eliyahu,E., Frolenkov,G.I., Strome,S.E., Durand,B.,
            Zaghloul,N.A., Jones,S.M., Reith,W. and Hertzano,R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   7  (bases 1 to 3485)
  AUTHORS   Huang,Q. and Huang,H.Q.
  TITLE     Alterations of protein profile in zebrafish liver cells exposed to
            methyl parathion: a membrane proteomics approach
  JOURNAL   Chemosphere 87 (1), 68-76 (2012)
   PUBMED   22182705
REFERENCE   8  (bases 1 to 3485)
  AUTHORS   Asakawa,K. and Kawakami,K.
  TITLE     A transgenic zebrafish for monitoring in vivo microtubule
            structures
  JOURNAL   Dev Dyn 239 (10), 2695-2699 (2010)
   PUBMED   20737511
REFERENCE   9  (bases 1 to 3485)
  AUTHORS   Singh,S.K., Sundaram,C.S., Shanbhag,S. and Idris,M.M.
  TITLE     Proteomic profile of zebrafish brain based on two-dimensional gel
            electrophoresis matrix-assisted laser desorption/ionization MS/MS
            analysis
  JOURNAL   Zebrafish 7 (2), 169-177 (2010)
   PUBMED   20528263
REFERENCE   10 (bases 1 to 3485)
  AUTHORS   Greiling,T.M., Houck,S.A. and Clark,J.I.
  TITLE     The zebrafish lens proteome during development and aging
  JOURNAL   Mol Vis 15, 2313-2325 (2009)
   PUBMED   19936306
  REMARK    Publication Status: Online-Only
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC060904.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CK709103.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4476799 [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..3485
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="wild type"
                     /db_xref="taxon:7955"
                     /chromosome="11"
                     /map="11"
     gene            1..3485
                     /gene="tuba2"
                     /gene_synonym="zgc:73108"
                     /note="tubulin, alpha 2"
                     /db_xref="GeneID:406303"
                     /db_xref="ZFIN:ZDB-GENE-040426-1970"
     exon            1..77
                     /gene="tuba2"
                     /gene_synonym="zgc:73108"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    36..38
                     /gene="tuba2"
                     /gene_synonym="zgc:73108"
                     /note="upstream in-frame stop codon"
     CDS             75..1430
                     /gene="tuba2"
                     /gene_synonym="zgc:73108"
                     /codon_start=1
                     /product="tubulin, alpha 2"
                     /protein_id="NP_998195.1"
                     /db_xref="GeneID:406303"
                     /db_xref="ZFIN:ZDB-GENE-040426-1970"
                     /translation="MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGG
                     GDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYSQLFHPEQLITGKEDAANN
                     YARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVD
                     YGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD
                     IDRPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVI
                     SAEKACHEQLSVSEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNVAIAA
                     IKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLARVQRAVCMLSNTTAIAEAWARLD
                     HKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEE
                     Y"
     exon            78..300
                     /gene="tuba2"
                     /gene_synonym="zgc:73108"
                     /inference="alignment:Splign:2.1.0"
     exon            301..449
                     /gene="tuba2"
                     /gene_synonym="zgc:73108"
                     /inference="alignment:Splign:2.1.0"
     exon            450..3470
                     /gene="tuba2"
                     /gene_synonym="zgc:73108"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcatagcga cgtctcatcc tccatcttct ctgaatagtg catctgcaca cctacatctg
       61 tgcaaaaccg caaaatgcgt gagtgtatct ccatccatgt gggtcaagct ggtgtccaga
      121 tcggcaatgc ctgctgggaa ctttactgtc ttgagcatgg gatccagccg gatggacaga
      181 tgcccagcga taagacggtt ggcggaggag acgattcctt caacactttc ttcagcgaga
      241 ccggagcggg caaacatgtg ccaagagctg tgttcgtcga tctggagccc actgtgattg
      301 atgaggttcg cactggaact tacagccaac ttttccaccc tgagcagctg atcactggaa
      361 aggaggatgc agcaaacaac tatgcccgcg gccattacac tatcggaaaa gaaatcatcg
      421 atctcgttct tgacaggatt cgcaaactgg ccgaccagtg cactggactc caaggcttct
      481 tggttttcca cagctttgga ggaggaaccg gttccggctt cacctcttta ctgatggagc
      541 gcctctctgt cgactatggc aagaaatcca agctggagtt ctccatctat ccggctccgc
      601 aggtgtctac agcagtggtg gagccctaca actccatcct caccacccac accaccctgg
      661 agcactcgga ctgtgctttc atggtggaca acgaggccat ctacgacatc tgccgcagaa
      721 acctggacat cgaccgccca acatacacca acctcaacag gctaataagc caaatcgtgt
      781 cttcaatcac agcttccttg agattcgatg gcgcgctcaa tgttgacctc acagagttcc
      841 agaccaactt ggtgccatat ccacgtattc atttcccact ggcgacgtat gctccagtga
      901 tttctgctga gaaagcatgc cacgagcagc tttcagtgtc tgagatcact aatgcatgct
      961 ttgagccggc taatcagatg gtgaaatgtg acccgcgcca tggtaaatac atggcctgct
     1021 gtcttctgta ccgcggagat gtcgtaccca aagatgtaaa tgttgctatc gccgcaatca
     1081 agaccaagcg cagtattcaa tttgtggact ggtgtccgac tggtttcaag gttggcatca
     1141 attatcagcc tcccactgtt gtcccgggtg gagatttggc aagagttcag cgtgccgtct
     1201 gcatgttgag caacaccact gctattgccg aagcctgggc taggcttgat cacaagtttg
     1261 acctgatgta tgctaaacgt gcctttgtgc actggtacgt aggtgaagga atggaggagg
     1321 gcgagttctc ggaggccaga gaggacatgg ctgctttgga gaaagattac gaggaagtcg
     1381 gtgtagattc agtggaagga gaaggagaag aggaaggtga ggagtattag atttggtcca
     1441 cttctctgtg gaataaacag ggttcccacg cttcttgaag gtctcattga aattaaaaag
     1501 aacgtttttt ttagatgtta gtaacagtat tgttaatttt agggatattt ataggctagt
     1561 gcgctccaaa atttgtgatt ataaaaaaac aatataaaca ggtaaaactt ggtgtttgtc
     1621 actttcaccc aaatggatta aggatttatt ctgacatcgc ctcatgcttc agttccttaa
     1681 atcttctgac caataaaatg ctcttaagaa tctgacatgc cccaccccct tcttctcatt
     1741 tgcttttcat ttgatgcact tgagcttaaa cactctcact ggcagagctg tgataaaaca
     1801 aaatgctatt ggctgttttt aaaaaaaatc agaggagcta cttttggtta agattgtcaa
     1861 acatcgaata aaaaattcaa agcacttcac gggaccttta aaagtgcttg attttcagac
     1921 acatggattc aaggcgtgga aagaccttaa aaacaaacac aggtccttaa caagtgcttg
     1981 aattaatttt atttcgaaaa attttactta attgtcaaaa gcagaatgaa agaaactgag
     2041 aaatttttaa tcctaaattt aacacttgta caataacact gacaaataat gcacatttga
     2101 actgtatttc acagtatcga attgaacaaa tttgatcaaa tttctttaaa cacgactgtt
     2161 taaaacggta aaaatgtttg gaaattacct aattaattaa ttgagtttta atgtaaatat
     2221 taagtgtaag tgaaatgtta agtacaccac agactactgg tgctacatat gctggccata
     2281 tctgtcaaca ttgggataaa aatacgggat ccgtaatgct tcaaatccaa atgatagaat
     2341 acatagcaaa cattagaaaa ctaaaaataa aataaaaggt ttagcctatt aaaatcaata
     2401 tttacaaata ttgattaaag ttactctagt tatttagtat tgagcagcga atgtctcatt
     2461 ttgatcactg tcactttaag aatccacaga tctataatga aagcatgtga ttacatttgt
     2521 aatcaaaact catttaactc attgtttaaa aacagccaaa taccagtgtc cactttcact
     2581 ccttttcaaa tcgcatgtac agtagctgat ctgggaacag tgtctttatt attagggagc
     2641 gcgtctgtca gtcagcacta gacaccgtta ttgattcaga ggttgcatat gaagggcaat
     2701 ggtcaacgca gagctttaat ggaaataaag taaatgcagc taatttagta ttaatttcaa
     2761 cgtgctttca agccaatata aagagaaagt ataattctct ttaacagctc ttgccattaa
     2821 atcccatttg agacctcctc tctgatgcta ctttaggttt tcatatatag aaaaaataaa
     2881 aatatgggga aatgtgcggg atataatggt aaaatagagg agaatcccag caaaaatgga
     2941 gggggttgac aggtatgcag gggtatgaat tattaaaggt gcttgattta aaattaagaa
     3001 gtccttgaaa gactttaaat ctgctgttca tgaaagcgtg ggaaccctaa ataaaaacaa
     3061 atagctggta gcctcttgac agattgcttc gctagctgaa gaaaatgcca agtgatgtaa
     3121 tggttgtgtt tgtccctgat caacatatag caaaagcggt aacactttag tttgagtaac
     3181 aattcacact attaattact ggcttagtac ctgcttatta ataagatatt aactgttata
     3241 aagtgtgatc ttatttaacc cctaatccca gccaatacct aaatccaact actaacatac
     3301 taactattaa taagcagcta attagtagtt tattgagctg taagtcttag ttaatggttt
     3361 gttaatagcg tgaattgtac attcaaataa agtgaccgca aaagctaatt gtgaatatta
     3421 ctgtgcctat tttggtgtaa agtactcaat aaaatgaacc agtaaataaa aaaaaaaaaa
     3481 aaaaa
//
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