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NCBI Reference Sequence: NM_001243424.1
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LOCUS NM_001243424 1595 bp mRNA linear VRT 16-SEP-2024 DEFINITION Danio rerio ribulose-5-phosphate-3-epimerase (rpe), mRNA. ACCESSION NM_001243424 NM_201312 VERSION NM_001243424.1 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. REFERENCE 1 (bases 1 to 1595) AUTHORS Bayes A, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A, Choudhary JS, Emes RD and Grant SG. TITLE Evolution of complexity in the zebrafish synapse proteome JOURNAL Nat Commun 8, 14613 (2017) PUBMED 28252024 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 1595) AUTHORS Shim H, Kim JH, Kim CY, Hwang S, Kim H, Yang S, Lee JE and Lee I. TITLE Function-driven discovery of disease genes in zebrafish using an integrated genomics big data resource JOURNAL Nucleic Acids Res 44 (20), 9611-9623 (2016) PUBMED 27903883 REFERENCE 3 (bases 1 to 1595) AUTHORS Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I, Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and Bobe J. TITLE Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database JOURNAL BMC Genomics 17, 368 (2016) PUBMED 27189481 REMARK Publication Status: Online-Only REFERENCE 4 (bases 1 to 1595) AUTHORS Kolmakov NN, Kube M, Reinhardt R and Canario AV. TITLE Analysis of the goldfish Carassius auratus olfactory epithelium transcriptome reveals the presence of numerous non-olfactory GPCR and putative receptors for progestin pheromones JOURNAL BMC Genomics 9, 429 (2008) PUBMED 18803863 REMARK Publication Status: Online-Only REFERENCE 5 (bases 1 to 1595) AUTHORS Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly PD, Chu F, Postlethwait JH and Talbot WS. TITLE The zebrafish gene map defines ancestral vertebrate chromosomes JOURNAL Genome Res 15 (9), 1307-1314 (2005) PUBMED 16109975 COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from EH585116.1, CT608262.2 and EH574883.1. On Feb 3, 2016 this sequence version replaced NM_201312.1. ##Evidence-Data-START## Transcript exon combination :: EH585116.1, BC059555.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA3505370, SAMEA3505374 [ECO:0006172] ##Evidence-Data-END## COMPLETENESS: complete on the 3' end. PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-703 EH585116.1 32-734 704-1357 CT608262.2 67-720 1358-1595 EH574883.1 1-238 c FEATURES Location/Qualifiers source 1..1595 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="9" /map="9" gene 1..1595 /gene="rpe" /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11; wu:fc20b11; xx:tdsubc_2c8" /note="ribulose-5-phosphate-3-epimerase" /db_xref="GeneID:334897" /db_xref="ZFIN:ZDB-GENE-030131-6837" exon 1..190 /gene="rpe" /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11; wu:fc20b11; xx:tdsubc_2c8" /inference="alignment:Splign:2.1.0" misc_feature 6..8 /gene="rpe" /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11; wu:fc20b11; xx:tdsubc_2c8" /note="upstream in-frame stop codon" CDS 69..755 /gene="rpe" /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11; wu:fc20b11; xx:tdsubc_2c8" /EC_number="5.1.3.1" /codon_start=1 /product="ribulose-phosphate 3-epimerase" /protein_id="NP_001230353.1" /db_xref="GeneID:334897" /db_xref="ZFIN:ZDB-GENE-030131-6837" /translation="MAYTAKIGPSILSSDLSQLGRECERMMECGADYLHLDVMDGHFV PNITFGHPMVECLRSCIGPDPFFDMHMMVSRPEQWVKPMAAAGANQYTFHLEATSNPG NLIKEIRESGMKVGLAIKPGTTVEELAPWAGQIDMALVMTVEPGFGGQKFMEDMMPKV SWLRGQFPSLDIEVDGGVGPDSIHRCAEAGANMIVSGSAVVSSDDPRSVIALLKNVVM EAIQKRSLDR" exon 191..270 /gene="rpe" /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11; wu:fc20b11; xx:tdsubc_2c8" /inference="alignment:Splign:2.1.0" exon 271..410 /gene="rpe" /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11; wu:fc20b11; xx:tdsubc_2c8" /inference="alignment:Splign:2.1.0" exon 411..545 /gene="rpe" /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11; wu:fc20b11; xx:tdsubc_2c8" /inference="alignment:Splign:2.1.0" exon 546..632 /gene="rpe" /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11; wu:fc20b11; xx:tdsubc_2c8" /inference="alignment:Splign:2.1.0" exon 633..1595 /gene="rpe" /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11; wu:fc20b11; xx:tdsubc_2c8" /inference="alignment:Splign:2.1.0" ORIGIN 1 tgttttgaaa ggcgcctggg aatatcagaa taatagcgga agtgtgcaga agtggcagga 61 gaagcagcat ggcgtacacg gcgaaaatcg gtccatctat tttgagcagc gacctgtctc 121 agctcgggag ggaatgcgag cgaatgatgg agtgcggtgc tgactatctg caccttgacg 181 tcatggatgg gcattttgtt ccaaacatca catttgggca tccaatggtg gaatgtttac 241 gaagctgtat cggacctgat ccattttttg acatgcatat gatggtatcc agaccagagc 301 agtgggtgaa accaatggca gcagctggag ccaatcaata cactttccat ctagaagcta 361 caagcaaccc cggcaatctt atcaaggaaa tcagagagag tggcatgaag gttggtcttg 421 ctattaaacc tggtacaact gttgaagaat tggcaccatg ggctggacag attgacatgg 481 ctcttgtcat gacagtagag cctggctttg gtggtcagaa atttatggaa gatatgatgc 541 caaaagtgag ctggctcagg ggtcagttcc catctctaga cattgaagtg gatggtggag 601 tcggtccaga cagcatccac agatgtgctg aggctggagc aaacatgatc gtgtcgggca 661 gtgccgtggt gagcagcgat gaccctcgtt ctgtaatcgc cctcctcaaa aatgtcgtta 721 tggaggctat ccagaaacgt tctttggacc gttgagcatc ttgaattttt acctgatgtc 781 agttttcagc caccactgga agtcattcct gcagattctg agagtccgtt gtagtgtaca 841 gtttgttaaa tgaattctca gtggtgcttg tgaacggaca tgatccaatg ttggatgtgc 901 cgaatcttca aaccacagga actgccttta cccagactct tgcttacgtc aagctggagt 961 tttcagagaa aagtgatctg aaagaatggg tctgttcctt ctacaccagt ttgatcattc 1021 ctctcttaag taaactctct ttacttaagt caattaagtc attttgtttg atttgtcagt 1081 ttgtcgcagc atctgttact gttgatgagg ctgcagatta tcaatttcaa cagtttttag 1141 tttttaagtt gaaaaatgac attgaaattg agttttgcat gttttcaata ctgtaaagta 1201 gagcaggtat tggcatggac aaatgaattc tgacacattc cacaacattt caagtacact 1261 ctgaaatgat aaaattataa gcaaaagact tgtggtgtca attgtcagtc ccactcaccc 1321 cagttaaatc ataggaacat ggaaatgtag ctgttaacat tcgatataat cccacttttc 1381 atggtcaaca ttaaaattga aagattttat agtgcaagtg taataatcct attatgaatt 1441 attcatattt ctttttttta gttttaatta aattactatc acataccccc acaatttttt 1501 ctcctatcaa gtttgcatcc acatctgcct ctttccaaat aacttaagtt taatttcaat 1561 gtttatctta ataataaagc aaaaaaaaat gttta //
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