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Danio rerio ribulose-5-phosphate-3-epimerase (rpe), mRNA

NCBI Reference Sequence: NM_001243424.1

FASTA Graphics 

LOCUS       NM_001243424            1595 bp    mRNA    linear   VRT 16-SEP-2024
DEFINITION  Danio rerio ribulose-5-phosphate-3-epimerase (rpe), mRNA.
ACCESSION   NM_001243424 NM_201312
VERSION     NM_001243424.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1595)
  AUTHORS   Bayes A, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A,
            Choudhary JS, Emes RD and Grant SG.
  TITLE     Evolution of complexity in the zebrafish synapse proteome
  JOURNAL   Nat Commun 8, 14613 (2017)
   PUBMED   28252024
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1595)
  AUTHORS   Shim H, Kim JH, Kim CY, Hwang S, Kim H, Yang S, Lee JE and Lee I.
  TITLE     Function-driven discovery of disease genes in zebrafish using an
            integrated genomics big data resource
  JOURNAL   Nucleic Acids Res 44 (20), 9611-9623 (2016)
   PUBMED   27903883
REFERENCE   3  (bases 1 to 1595)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 1595)
  AUTHORS   Kolmakov NN, Kube M, Reinhardt R and Canario AV.
  TITLE     Analysis of the goldfish Carassius auratus olfactory epithelium
            transcriptome reveals the presence of numerous non-olfactory GPCR
            and putative receptors for progestin pheromones
  JOURNAL   BMC Genomics 9, 429 (2008)
   PUBMED   18803863
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 1595)
  AUTHORS   Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly
            PD, Chu F, Postlethwait JH and Talbot WS.
  TITLE     The zebrafish gene map defines ancestral vertebrate chromosomes
  JOURNAL   Genome Res 15 (9), 1307-1314 (2005)
   PUBMED   16109975
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            EH585116.1, CT608262.2 and EH574883.1.
            
            On Feb 3, 2016 this sequence version replaced NM_201312.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: EH585116.1, BC059555.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA3505370,
                                           SAMEA3505374 [ECO:0006172]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-703               EH585116.1         32-734
            704-1357            CT608262.2         67-720
            1358-1595           EH574883.1         1-238               c
FEATURES             Location/Qualifiers
     source          1..1595
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="9"
                     /map="9"
     gene            1..1595
                     /gene="rpe"
                     /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11;
                     wu:fc20b11; xx:tdsubc_2c8"
                     /note="ribulose-5-phosphate-3-epimerase"
                     /db_xref="GeneID:334897"
                     /db_xref="ZFIN:ZDB-GENE-030131-6837"
     exon            1..190
                     /gene="rpe"
                     /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11;
                     wu:fc20b11; xx:tdsubc_2c8"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    6..8
                     /gene="rpe"
                     /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11;
                     wu:fc20b11; xx:tdsubc_2c8"
                     /note="upstream in-frame stop codon"
     CDS             69..755
                     /gene="rpe"
                     /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11;
                     wu:fc20b11; xx:tdsubc_2c8"
                     /EC_number="5.1.3.1"
                     /codon_start=1
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="NP_001230353.1"
                     /db_xref="GeneID:334897"
                     /db_xref="ZFIN:ZDB-GENE-030131-6837"
                     /translation="MAYTAKIGPSILSSDLSQLGRECERMMECGADYLHLDVMDGHFV
                     PNITFGHPMVECLRSCIGPDPFFDMHMMVSRPEQWVKPMAAAGANQYTFHLEATSNPG
                     NLIKEIRESGMKVGLAIKPGTTVEELAPWAGQIDMALVMTVEPGFGGQKFMEDMMPKV
                     SWLRGQFPSLDIEVDGGVGPDSIHRCAEAGANMIVSGSAVVSSDDPRSVIALLKNVVM
                     EAIQKRSLDR"
     exon            191..270
                     /gene="rpe"
                     /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11;
                     wu:fc20b11; xx:tdsubc_2c8"
                     /inference="alignment:Splign:2.1.0"
     exon            271..410
                     /gene="rpe"
                     /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11;
                     wu:fc20b11; xx:tdsubc_2c8"
                     /inference="alignment:Splign:2.1.0"
     exon            411..545
                     /gene="rpe"
                     /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11;
                     wu:fc20b11; xx:tdsubc_2c8"
                     /inference="alignment:Splign:2.1.0"
     exon            546..632
                     /gene="rpe"
                     /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11;
                     wu:fc20b11; xx:tdsubc_2c8"
                     /inference="alignment:Splign:2.1.0"
     exon            633..1595
                     /gene="rpe"
                     /gene_synonym="ik:tdsubc_2c8; wu:fa07h08; wu:fb93d11;
                     wu:fc20b11; xx:tdsubc_2c8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgttttgaaa ggcgcctggg aatatcagaa taatagcgga agtgtgcaga agtggcagga
       61 gaagcagcat ggcgtacacg gcgaaaatcg gtccatctat tttgagcagc gacctgtctc
      121 agctcgggag ggaatgcgag cgaatgatgg agtgcggtgc tgactatctg caccttgacg
      181 tcatggatgg gcattttgtt ccaaacatca catttgggca tccaatggtg gaatgtttac
      241 gaagctgtat cggacctgat ccattttttg acatgcatat gatggtatcc agaccagagc
      301 agtgggtgaa accaatggca gcagctggag ccaatcaata cactttccat ctagaagcta
      361 caagcaaccc cggcaatctt atcaaggaaa tcagagagag tggcatgaag gttggtcttg
      421 ctattaaacc tggtacaact gttgaagaat tggcaccatg ggctggacag attgacatgg
      481 ctcttgtcat gacagtagag cctggctttg gtggtcagaa atttatggaa gatatgatgc
      541 caaaagtgag ctggctcagg ggtcagttcc catctctaga cattgaagtg gatggtggag
      601 tcggtccaga cagcatccac agatgtgctg aggctggagc aaacatgatc gtgtcgggca
      661 gtgccgtggt gagcagcgat gaccctcgtt ctgtaatcgc cctcctcaaa aatgtcgtta
      721 tggaggctat ccagaaacgt tctttggacc gttgagcatc ttgaattttt acctgatgtc
      781 agttttcagc caccactgga agtcattcct gcagattctg agagtccgtt gtagtgtaca
      841 gtttgttaaa tgaattctca gtggtgcttg tgaacggaca tgatccaatg ttggatgtgc
      901 cgaatcttca aaccacagga actgccttta cccagactct tgcttacgtc aagctggagt
      961 tttcagagaa aagtgatctg aaagaatggg tctgttcctt ctacaccagt ttgatcattc
     1021 ctctcttaag taaactctct ttacttaagt caattaagtc attttgtttg atttgtcagt
     1081 ttgtcgcagc atctgttact gttgatgagg ctgcagatta tcaatttcaa cagtttttag
     1141 tttttaagtt gaaaaatgac attgaaattg agttttgcat gttttcaata ctgtaaagta
     1201 gagcaggtat tggcatggac aaatgaattc tgacacattc cacaacattt caagtacact
     1261 ctgaaatgat aaaattataa gcaaaagact tgtggtgtca attgtcagtc ccactcaccc
     1321 cagttaaatc ataggaacat ggaaatgtag ctgttaacat tcgatataat cccacttttc
     1381 atggtcaaca ttaaaattga aagattttat agtgcaagtg taataatcct attatgaatt
     1441 attcatattt ctttttttta gttttaatta aattactatc acataccccc acaatttttt
     1501 ctcctatcaa gtttgcatcc acatctgcct ctttccaaat aacttaagtt taatttcaat
     1561 gtttatctta ataataaagc aaaaaaaaat gttta
//
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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for ribulose-phosphate 3-epimerase (NP_001230353.1).

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