Warning: The NCBI web site requires JavaScript to function. more...
An official website of the United States government
The .gov means it's official. Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you're on a federal government site.
The site is secure. The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.
Download features.
Download gene features.
NCBI Reference Sequence: XR_005491790.2
FASTA Graphics
LOCUS XR_005491790 9295 bp RNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus uncharacterized LOC102554603 (LOC102554603), transcript variant X6, ncRNA. ACCESSION XR_005491790 VERSION XR_005491790.2 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086030) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XR_005491790.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9295 /organism="Rattus norvegicus" /mol_type="transcribed RNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="12" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..9295 /gene="LOC102554603" /note="uncharacterized LOC102554603; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 13 long SRA reads" /db_xref="GeneID:102554603" /db_xref="RGD:7721386" ncRNA 1..9295 /ncRNA_class="lncRNA" /gene="LOC102554603" /product="uncharacterized LOC102554603, transcript variant X6" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:102554603" /db_xref="RGD:7721386" ORIGIN 1 tactgacagt ccaggaaggg tttgtatgga aataggcaca gtgatcatca cttctgtccc 61 tggatagaag gcaactgttg ttcctctctg gacattagcc ccacgtggct ttcactgggt 121 ctctatcact taagcacttg cctcctgctt cccttcttag gcaccgtgat tagtggggtt 181 aatcctagac caacgttagg ttaggacaca ctcgcttgct tacacgttcg tctgctttgg 241 gagccaaggt cttaaagatt cattttgtcc attgtatccc cagcacacgg tggcgaactc 301 agatgtcagc gaagatttta aaacccactg ttaagggagt aagagggttt taaagaaatg 361 tgaagcccct cttccctttt acctagagac aaagatcctt ccttggcttg agagctgggg 421 gttttcttcc ccaatcttga gttttcaagc actgggcacc agaaatcagg ttgctgccta 481 aaaaaaatcc tcactgctat tgaggtcacg gtgacccgga caggacttgg agtccctgct 541 cacccattca atcactcctg cagggcctga cacccagtaa atgacctgta cgtatttgat 601 tttacaaaaa agcacccccg cccccgaaac aagagccagg atgttcctag gccaggaaat 661 ccgttcctct gcctgcgtcc catcctcctc catgcgcctc catttgctga actcacagtg 721 gattcggagg ccaggaaagc gacacctgcc ggcggatggc ggaagtgcgg ctcaccggag 781 ccggcatcct gcaggccagg cagaaacggg ccctgggcca gggcgtctgc acgtggtttg 841 cctgagcaag ccggttcttg attcggttgc tctgagcgca gcacggtctc cttctttgaa 901 agatcgtcca aaacttctcc atcaggcatg tgtagaggag cctacatgtc ttcaggtttt 961 ggccctgggt gacatcttca gtcagcctgc tcccctctcc cctctggtgt gcccagtctc 1021 tagatacctc ctgctcggtg aattccatta attttaactc tgccaaatga atggagtccc 1081 ctttcctggt gcattagaac cctccccgtg cttcctgttc tgacttctag tagcagaagt 1141 gggtgggagc agaagggcca tgaaattcaa ggccagtctg ggttggttat cttgcctcaa 1201 aaacaaagag cgaaaccaaa aaagaacaca cgcttgtttt tccgccatca ctggtaattt 1261 tttcaaagcc agatcgtcct ctggtaagct tttgtcagcc ccttgcttcc tgcaggagct 1321 agtgtgtggt agccgtgcca ttcacagagg ctactacaat tcagcaaaaa cacaccacgt 1381 ctaatttatt acttgtgcgg gctatgcggg tctagcctca gcttataatc accctctttc 1441 attgtcacca agagctggaa gggaagcttt ctggagaaag gctggaagac ccgagccgtc 1501 tatctagagc tgctggtttg ggacttgtcc ctttaaggaa gggagagact tgagttcttg 1561 caaggctgtc aagctcttct aaggtgtcac ctgctgtcta ggtggacggg tagagaagcc 1621 aggctgcttc tctgcagatc agaaggctac aactctgaaa tctggcagct ctgtgccaat 1681 gactgtctgt gtggctgaac tcaggcctca cacgagagat gtctgctctc acattgttca 1741 aggtaagata cagttcatgt gcttcagact actagacctt tcctctgtgt gggtctctca 1801 cccttggaca ggcctaggtt caccgataaa acacttacct agaatgtgta gagacttgat 1861 ctccaccact gggggaaata taaaaaaatt taaaaatggc tgaagtcagg tgtccttttc 1921 cacttggcct tcctttgctt ttcctgtctt cggtctctta tcttctgggg agaagcttgc 1981 cctgatagta tatactgatt gacacactcc tgccacgctc acacagcatc cccacccctc 2041 cacccccact tctcacttcc tctgcacagc tgggaggcct ctcaccgctt tgctccctca 2101 ctccacctgc gagtgggggg aatcaatatt ttcgagggat gaatgactat gtctcttttt 2161 tttggcagat gagcctactt aagaaaacaa ctcaagtcaa aagaaatctt gacttccgaa 2221 gcttagctgg aaacacctcc agtccatgtg tgaggcagcc ttttcttgtc tgcttcagtc 2281 tcaatactga cacccccgcc ccaattcagt ttgagggaga gagtacttat ttctttctgg 2341 gttctaaact aaatacttga agcactcatt gggagctcca gaggcatgtc cggcctggag 2401 ctgtggtatc tccccacagc acatctccca ccctatgtca gcacaagggc acccttgcca 2461 gtcctgactg actctgaagg aatccatgta gagtgccgtg acactgggtc gtttgcagtc 2521 atctgtccag aaccctagta ccttgcagcc cctctctcct taatggcttg gctccgccca 2581 atccccgccc cgtttcctac caccaatcag cttaagtcct tcacccttcc gttgttactg 2641 tgtatctaca agtcgaactg actgccacta gcttaattgg tgtctgttgt gtacaccact 2701 ggtcccttag attccaagag tttgggtgag cattatagtt actttggaat aactttcagg 2761 gggagcctgt gaaaggtaat tataggcagc ctggaaattc ccagaaagcc ttggctttga 2821 aatagtcggg atttgcttct ttttttttcg gagctgggga ccgaacccag ggccttgcgg 2881 ttgctaggca agcactctac cactgagcca aatcccccgg gatttgcttc ttatctacgt 2941 acatgccgtg cactttacgt tagaagctct cggtttgggg atgtggacca cggtcatcgt 3001 aatgataaca gaagcagcgt gtgagccgct tgtcatgtgc caaacacaag ggttacaggg 3061 acatactttc aggacagttg tggtaggcag gggttggatg cagctctgtt tatggcttcc 3121 tcatctgtga gctcagccga gatctgacct ggtgtcctgg tttgctttcc gtgactctga 3181 taaacaccag tgggggaggc aacctgggaa ggagagggct ggttttgact tagagcaaca 3241 gttctccgtc tgtatgtcac aacccctttg gggttgaaag gaccctttca cgggggtggg 3301 gggggtggtc atgtaagaca atgggaaaac gcacacactg acgttacaat tcatagcagc 3361 agcaaaatta cggttatcgc aaagcaataa aataattttc tggttgggag gggggtgtca 3421 ccacaacacg agcaactgca ttaaagcatc atgcagcatt aggaagatta agaaccactg 3481 gcttagaggt tatttatagt ccattacgtc aggaatctgg aggcaggtcc agacgcaggg 3541 accatggatg aatgctgctt ctggctcact cagctttgag aaccaggtcc acccgcctaa 3601 cactaggctg gaccctccta cattcaacag gaaaaaaaaa aatcccacag ggcaatccga 3661 ctgaggtaat tcctcagttg aggttccctc aattagttgt gtcaatatgt gtgtcaaatt 3721 gataccccag gaaggtagaa gctggagatg gatcgggctg tgctggacag gagcaataga 3781 catctcctgt atctgaccgc ttcttagttt acgaaggaat cctggagact gatcactgat 3841 aggaacagtg ctccaaggcc aaacttatcc ctatcaccca ccaatccatt gtccagggaa 3901 gcctgtggaa tgcttgtggc ttcctgccta ccctttctcc ttatgcctcc tcaaatcttc 3961 ctccctcaca ttcccggccc agctctcatg attactcttc ttccggattt ttcagaacat 4021 tctagaaaat ctatgaagag acgagaaaaa catgaccccc cagcagaaca tgaccggttc 4081 ttctcaaacg gatgacccct cacccatggc agcagcaggt acaggccata gctgcggctg 4141 accttgtacc tcccctctta cacactccca gtgtttcttg tcagcaaatc tgtccaatcg 4201 ccaaaaggcc gaggagggtg ggggatgggc ccacgaaagc tgtgggtacc acaaaaccaa 4261 ggctaaagga caagaagatg gcatcgtggg tttttcatct ccaaggacat ctcaggggtc 4321 ctcttcaaag aactcgccat tcccaaacag gccaaaggct gtttgagatg accagaggtt 4381 agcaatatta tgcggtagaa tattaatgat atgcccctta gtgtgctgat gtattatgcg 4441 gacagttgag tggcatcgag aacgtccaca ctgcttgctg accacctggt ctccagagcc 4501 ttctcgtctc tccagtgaag cttcttaccc accaaacact ggcttctctc cttgcttccc 4561 ctccctaagc ctccagtaac cgtgttctcc tctaggcccc tcatataggg agatctgaag 4621 agcaaccaca ggtagtgata gcatccagtt acttagcgcg gtgtctagac tttcccatgc 4681 tgtgccggaa tcttcttcct cgtcgacttt gtgttagttt tctttctgtt gttgtgctaa 4741 aacaaacaaa caaaaaaccc aaccaaccaa ccaaataaac aaacccacaa acaaaagcaa 4801 cttatggaag aaagaggttt tggttgttgt ttgaggtttt ttttttttgt ttgtttgttt 4861 attttgtttg ctgttggttt ttgtttgttt tgctttgttc tcggtttctt gcttctggct 4921 tctggtccca gagggacaag agcccatcac ggttaggagg catggctgca agtgtcatca 4981 agggtggcag gagcaggagg ctaagagatc ttggaccaca agcagagagc gggaggtaga 5041 aggagggtga gcctatacat tttgaaaccc cgccctcagt gatatgcctt ctccagcaag 5101 gctgcatgct ttcccagaca gcaccatagc cgaggacccg gtattacaac ggccgagcct 5161 agtctcactc aaacaaggcg ggacatttag cttgttgtat ttccaaagca caccttgttt 5221 cctcatccat ccgtggatgg gccctcggga taacgtaatc agtgctgcaa aggttatgag 5281 catacacacc tcgggtcaag accctttatg tcttttgagg cttggccctg ctgtagtttg 5341 aatatgagat gtgcctcgct tcccaaaggt ccacgttcag cccagtcaaa gcaaggaagt 5401 ctctctccac acctttcagc agtaaatccg agtgaggttg gtgtatgtca accacaccct 5461 atccccaggc acctcggtgc tgtgcaggtt ggctctggag gggcagagtt gagggcggat 5521 gttcccttga actctcaagt ttgtggctcg gttcacacta gagcagctct gtaattcttc 5581 cagtccggct gccaatagca atcagaccct tctcaatgaa ggtgcatcag agcctcttga 5641 ggctgccttg aagggtccct aagaaacaag gtcacacccg tgccttccag caacggttga 5701 attcttgttc tctgtgtgtt gtagttattt ttcttttctt tttctttctt tttttttttt 5761 aagatttatt tattgtatat gagtacactg tagctgtctt cagacacacc agaagagggt 5821 atggaatctc attacagatg gttgtgagcc accatgtggt tgttgggaat tgaactcagg 5881 acctcaggaa gagcagtcgg tgctcttaac cactgagcca tctctccagc ccctgtagtt 5941 atttttctgt tgctatggta aaaataccat aagcaaggtg ccttatagaa gaaaaaaatg 6001 tttgggctta agattcaaga tgggtaagag ttcagtagaa gggggcagag ccccagtggc 6061 aggagcagga agctgtgagc ttccttctcg aagcacaagc acaaagccga catagtgaac 6121 tggaaacggc atgaagtctt taaactctca aagccctttc agagtgacgt acttacccgg 6181 gccaggctct acctcctaaa cctccccaaa gagcaccatg acaaatccat gagcttgtgg 6241 gggacattct tgttcaaacc accacgccat gagtcagctg gcacattcgt gagtctttca 6301 agccagaaga gctgggccct tggcagtgcc aggaaaacag aaaagggcct cttagactgc 6361 accagctact tcagtctata caggccaggc tgggccctgg agagctctga agtgaagccc 6421 tgagaaggca ggcttgcttt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt 6481 ctgtctgtct gtctgtctgt ctgtctgtct gtcttccaat aacagctagt agactgtgga 6541 atgaaatcac cattgagaac ttcttggtct gggctggaga aagggtctct tcaaaggaag 6601 agacaggtat ggggacctcc tgcagtccca cctgggaaag gcatctgtct cagtcacgtg 6661 gtttttcctc tctgcctgtc tcttgtgatt gtcgccacag cccagcagga gaaagctaaa 6721 catggcaggg ctccatttgc aggggagttg gacagttcta agtagcactg gtacctaggt 6781 gggggggaga ggtcctctag aggctaatct gcatatattt tcattcattt gcatgcacgt 6841 agtgttgcct atgaagcttc ttccagatgc tgaaaataaa ttcaactatt aatattttac 6901 aaattaaagg agggaggaac cacaaaaaga ccctttcatt tgcagtttaa atttaaaact 6961 aatcatagag gggttgggga tttatctcag tggtagagcg cttgcccttg gtttggtccc 7021 cagctccgga aaaaaaaaaa acaacaaaaa aaaaaaaaca aactaatcat agagcccttt 7081 tccttttcct ctgtctatcc ttccctccct ctctccgggt ttgaccccaa gatttttaat 7141 acacaggaga caaacacctt aatacaggtt ggggttgggg gatgaattgc tggctgatgt 7201 tggggacggg gagcgcgaca gttctcacag tgtagcccag gctggccagg aacttgctat 7261 gtagactagg ttggcctcga gttcaccaag ttctacctcc tgtttccagg agtgctggga 7321 ttgaaaatat atgctgccaa gttctattag tgtacacgtt ctataaacgt aaaaagaacc 7381 tattttgaga ccttttcagg gagagacaag agaaaagcgt ggtaaaatct cctgttgcac 7441 ggtagtctgt ctttttgccc ccaaagaact aactagtaca gtttggcaag gttgggcttt 7501 gccttctgat gctttttcta aagggaaaac ggactctcac cctggaaaac accagtcttg 7561 tttgttttct gttcctttag aagtcagccc tggagcggct ggcagcggtg agcacagctc 7621 tcgggcgttg tgtaaccgcc aggcaatcac gttgcaccca ccgcttccac agactggtaa 7681 ctgcaataat aaatcggagc ttattcaaat acgagaaacc atcccagcgg gctccaagtc 7741 acgtgtccag gtcacatggc ctgccagaca gagaaggcgg ctggcaatca ttaactaatg 7801 ctttctccca gggagaaaaa tgctggcttt aaggaggccg ggacgtcaga attgcaatag 7861 aagatttcct ctgctgcaag tctccttccc gaagagccat cctaaccaga gctgacagcc 7921 acggttctga gagccgagac actaagaaga cagatgtgac tttgttgtta cctcagaagc 7981 gaggcctcca agggaaaggc agctgagccc agtcctgaga cgctgaatga agcctgcccc 8041 agccttccat cccgcctttt ctacacctca accctcacga ccctcatcct tggtttgcac 8101 ccttgtaagc acatggaggc aggctgggcc atctgcagtg tggtttcgcc tctggtgtct 8161 cacttattat cccaacccca cctcttctcc aaggccttta gggcgacctg gcactgctta 8221 ctgtggtccc ctgctgagcc tcgagtgacg tcctggggag gtgtggaaca ctgatgctca 8281 tgtcaggctc cgtggagcag gaccgcagcc agcccctgtg acatctataa aaggctgccc 8341 cacccccgca cacctggtcc tcacgtggag gtggccatgg gaacctgagg gtagtgagtc 8401 accaggtggg aacccgagga cagtggggga cctttgcaga ggcacaagcc cagcatcacg 8461 cggtgccaga cagtgcagag gaccctttgt cacgtgattc gcagacgccg gtacaaatct 8521 ctccttggac tgagtaggtg cttctctgcg tgggggaatg ctgggctcat cctctggaac 8581 ccagaaggcc gcgattccag aaccgctgct gacagagcgg aggaggctcc ccacctgctg 8641 gaccaaccgc tgacatccat gttctcaaaa gggctgagtc gctggagcag ctcatttctg 8701 cacgctgcgg tttcgacttt cctccaagtg catagctgta tgacatctga gaggcagaag 8761 tcaggctgtc cctggtgcca agacagaggc tgagatgaca tgcattgtcc ctggaagcct 8821 gccttcttac aacctcctgg gagcatagag ggacctgcct gtcaggcgtc tagcctggtg 8881 gggaagcccc ttcgatttcc atagcctgaa aattaccgtt ctgtgctacg ggagcagaag 8941 agtttcgttc cactgttttt ctgtttattc acttttattc cgaacactca gaggtagctt 9001 aaaagtccac atgttaaaat tttctagaaa agtcacaaag ttgtggcttc ccggcccact 9061 cttacttcca tctctgagtt agttgtactg cccgtgtttg gagcactcgt tcgtaaacaa 9121 tacattttaa aagctgtgtc tttcttaatt tagagactcc tggtgttgct atgacagtcg 9181 aagaatagct ttctccctcc tcaggccttc ttgcctcgca aatttcctga atttcctcct 9241 gttttacctg ccctccatca tgagatttaa tctaattaaa aaatatattt atgtg //
Whole sequence Selected region from: to:
All features Gene, RNA, and CDS features only
Show sequence Show reverse complement Show gap features
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on