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PREDICTED: Rattus norvegicus uncharacterized LOC102554603 (LOC102554603), transcript variant X6, ncRNA

NCBI Reference Sequence: XR_005491790.2

FASTA Graphics 

LOCUS       XR_005491790            9295 bp    RNA     linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus uncharacterized LOC102554603
            (LOC102554603), transcript variant X6, ncRNA.
ACCESSION   XR_005491790
VERSION     XR_005491790.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086030) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XR_005491790.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9295
                     /organism="Rattus norvegicus"
                     /mol_type="transcribed RNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..9295
                     /gene="LOC102554603"
                     /note="uncharacterized LOC102554603; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 13 long SRA reads"
                     /db_xref="GeneID:102554603"
                     /db_xref="RGD:7721386"
     ncRNA           1..9295
                     /ncRNA_class="lncRNA"
                     /gene="LOC102554603"
                     /product="uncharacterized LOC102554603, transcript variant
                     X6"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
                     /db_xref="GeneID:102554603"
                     /db_xref="RGD:7721386"
ORIGIN      
        1 tactgacagt ccaggaaggg tttgtatgga aataggcaca gtgatcatca cttctgtccc
       61 tggatagaag gcaactgttg ttcctctctg gacattagcc ccacgtggct ttcactgggt
      121 ctctatcact taagcacttg cctcctgctt cccttcttag gcaccgtgat tagtggggtt
      181 aatcctagac caacgttagg ttaggacaca ctcgcttgct tacacgttcg tctgctttgg
      241 gagccaaggt cttaaagatt cattttgtcc attgtatccc cagcacacgg tggcgaactc
      301 agatgtcagc gaagatttta aaacccactg ttaagggagt aagagggttt taaagaaatg
      361 tgaagcccct cttccctttt acctagagac aaagatcctt ccttggcttg agagctgggg
      421 gttttcttcc ccaatcttga gttttcaagc actgggcacc agaaatcagg ttgctgccta
      481 aaaaaaatcc tcactgctat tgaggtcacg gtgacccgga caggacttgg agtccctgct
      541 cacccattca atcactcctg cagggcctga cacccagtaa atgacctgta cgtatttgat
      601 tttacaaaaa agcacccccg cccccgaaac aagagccagg atgttcctag gccaggaaat
      661 ccgttcctct gcctgcgtcc catcctcctc catgcgcctc catttgctga actcacagtg
      721 gattcggagg ccaggaaagc gacacctgcc ggcggatggc ggaagtgcgg ctcaccggag
      781 ccggcatcct gcaggccagg cagaaacggg ccctgggcca gggcgtctgc acgtggtttg
      841 cctgagcaag ccggttcttg attcggttgc tctgagcgca gcacggtctc cttctttgaa
      901 agatcgtcca aaacttctcc atcaggcatg tgtagaggag cctacatgtc ttcaggtttt
      961 ggccctgggt gacatcttca gtcagcctgc tcccctctcc cctctggtgt gcccagtctc
     1021 tagatacctc ctgctcggtg aattccatta attttaactc tgccaaatga atggagtccc
     1081 ctttcctggt gcattagaac cctccccgtg cttcctgttc tgacttctag tagcagaagt
     1141 gggtgggagc agaagggcca tgaaattcaa ggccagtctg ggttggttat cttgcctcaa
     1201 aaacaaagag cgaaaccaaa aaagaacaca cgcttgtttt tccgccatca ctggtaattt
     1261 tttcaaagcc agatcgtcct ctggtaagct tttgtcagcc ccttgcttcc tgcaggagct
     1321 agtgtgtggt agccgtgcca ttcacagagg ctactacaat tcagcaaaaa cacaccacgt
     1381 ctaatttatt acttgtgcgg gctatgcggg tctagcctca gcttataatc accctctttc
     1441 attgtcacca agagctggaa gggaagcttt ctggagaaag gctggaagac ccgagccgtc
     1501 tatctagagc tgctggtttg ggacttgtcc ctttaaggaa gggagagact tgagttcttg
     1561 caaggctgtc aagctcttct aaggtgtcac ctgctgtcta ggtggacggg tagagaagcc
     1621 aggctgcttc tctgcagatc agaaggctac aactctgaaa tctggcagct ctgtgccaat
     1681 gactgtctgt gtggctgaac tcaggcctca cacgagagat gtctgctctc acattgttca
     1741 aggtaagata cagttcatgt gcttcagact actagacctt tcctctgtgt gggtctctca
     1801 cccttggaca ggcctaggtt caccgataaa acacttacct agaatgtgta gagacttgat
     1861 ctccaccact gggggaaata taaaaaaatt taaaaatggc tgaagtcagg tgtccttttc
     1921 cacttggcct tcctttgctt ttcctgtctt cggtctctta tcttctgggg agaagcttgc
     1981 cctgatagta tatactgatt gacacactcc tgccacgctc acacagcatc cccacccctc
     2041 cacccccact tctcacttcc tctgcacagc tgggaggcct ctcaccgctt tgctccctca
     2101 ctccacctgc gagtgggggg aatcaatatt ttcgagggat gaatgactat gtctcttttt
     2161 tttggcagat gagcctactt aagaaaacaa ctcaagtcaa aagaaatctt gacttccgaa
     2221 gcttagctgg aaacacctcc agtccatgtg tgaggcagcc ttttcttgtc tgcttcagtc
     2281 tcaatactga cacccccgcc ccaattcagt ttgagggaga gagtacttat ttctttctgg
     2341 gttctaaact aaatacttga agcactcatt gggagctcca gaggcatgtc cggcctggag
     2401 ctgtggtatc tccccacagc acatctccca ccctatgtca gcacaagggc acccttgcca
     2461 gtcctgactg actctgaagg aatccatgta gagtgccgtg acactgggtc gtttgcagtc
     2521 atctgtccag aaccctagta ccttgcagcc cctctctcct taatggcttg gctccgccca
     2581 atccccgccc cgtttcctac caccaatcag cttaagtcct tcacccttcc gttgttactg
     2641 tgtatctaca agtcgaactg actgccacta gcttaattgg tgtctgttgt gtacaccact
     2701 ggtcccttag attccaagag tttgggtgag cattatagtt actttggaat aactttcagg
     2761 gggagcctgt gaaaggtaat tataggcagc ctggaaattc ccagaaagcc ttggctttga
     2821 aatagtcggg atttgcttct ttttttttcg gagctgggga ccgaacccag ggccttgcgg
     2881 ttgctaggca agcactctac cactgagcca aatcccccgg gatttgcttc ttatctacgt
     2941 acatgccgtg cactttacgt tagaagctct cggtttgggg atgtggacca cggtcatcgt
     3001 aatgataaca gaagcagcgt gtgagccgct tgtcatgtgc caaacacaag ggttacaggg
     3061 acatactttc aggacagttg tggtaggcag gggttggatg cagctctgtt tatggcttcc
     3121 tcatctgtga gctcagccga gatctgacct ggtgtcctgg tttgctttcc gtgactctga
     3181 taaacaccag tgggggaggc aacctgggaa ggagagggct ggttttgact tagagcaaca
     3241 gttctccgtc tgtatgtcac aacccctttg gggttgaaag gaccctttca cgggggtggg
     3301 gggggtggtc atgtaagaca atgggaaaac gcacacactg acgttacaat tcatagcagc
     3361 agcaaaatta cggttatcgc aaagcaataa aataattttc tggttgggag gggggtgtca
     3421 ccacaacacg agcaactgca ttaaagcatc atgcagcatt aggaagatta agaaccactg
     3481 gcttagaggt tatttatagt ccattacgtc aggaatctgg aggcaggtcc agacgcaggg
     3541 accatggatg aatgctgctt ctggctcact cagctttgag aaccaggtcc acccgcctaa
     3601 cactaggctg gaccctccta cattcaacag gaaaaaaaaa aatcccacag ggcaatccga
     3661 ctgaggtaat tcctcagttg aggttccctc aattagttgt gtcaatatgt gtgtcaaatt
     3721 gataccccag gaaggtagaa gctggagatg gatcgggctg tgctggacag gagcaataga
     3781 catctcctgt atctgaccgc ttcttagttt acgaaggaat cctggagact gatcactgat
     3841 aggaacagtg ctccaaggcc aaacttatcc ctatcaccca ccaatccatt gtccagggaa
     3901 gcctgtggaa tgcttgtggc ttcctgccta ccctttctcc ttatgcctcc tcaaatcttc
     3961 ctccctcaca ttcccggccc agctctcatg attactcttc ttccggattt ttcagaacat
     4021 tctagaaaat ctatgaagag acgagaaaaa catgaccccc cagcagaaca tgaccggttc
     4081 ttctcaaacg gatgacccct cacccatggc agcagcaggt acaggccata gctgcggctg
     4141 accttgtacc tcccctctta cacactccca gtgtttcttg tcagcaaatc tgtccaatcg
     4201 ccaaaaggcc gaggagggtg ggggatgggc ccacgaaagc tgtgggtacc acaaaaccaa
     4261 ggctaaagga caagaagatg gcatcgtggg tttttcatct ccaaggacat ctcaggggtc
     4321 ctcttcaaag aactcgccat tcccaaacag gccaaaggct gtttgagatg accagaggtt
     4381 agcaatatta tgcggtagaa tattaatgat atgcccctta gtgtgctgat gtattatgcg
     4441 gacagttgag tggcatcgag aacgtccaca ctgcttgctg accacctggt ctccagagcc
     4501 ttctcgtctc tccagtgaag cttcttaccc accaaacact ggcttctctc cttgcttccc
     4561 ctccctaagc ctccagtaac cgtgttctcc tctaggcccc tcatataggg agatctgaag
     4621 agcaaccaca ggtagtgata gcatccagtt acttagcgcg gtgtctagac tttcccatgc
     4681 tgtgccggaa tcttcttcct cgtcgacttt gtgttagttt tctttctgtt gttgtgctaa
     4741 aacaaacaaa caaaaaaccc aaccaaccaa ccaaataaac aaacccacaa acaaaagcaa
     4801 cttatggaag aaagaggttt tggttgttgt ttgaggtttt ttttttttgt ttgtttgttt
     4861 attttgtttg ctgttggttt ttgtttgttt tgctttgttc tcggtttctt gcttctggct
     4921 tctggtccca gagggacaag agcccatcac ggttaggagg catggctgca agtgtcatca
     4981 agggtggcag gagcaggagg ctaagagatc ttggaccaca agcagagagc gggaggtaga
     5041 aggagggtga gcctatacat tttgaaaccc cgccctcagt gatatgcctt ctccagcaag
     5101 gctgcatgct ttcccagaca gcaccatagc cgaggacccg gtattacaac ggccgagcct
     5161 agtctcactc aaacaaggcg ggacatttag cttgttgtat ttccaaagca caccttgttt
     5221 cctcatccat ccgtggatgg gccctcggga taacgtaatc agtgctgcaa aggttatgag
     5281 catacacacc tcgggtcaag accctttatg tcttttgagg cttggccctg ctgtagtttg
     5341 aatatgagat gtgcctcgct tcccaaaggt ccacgttcag cccagtcaaa gcaaggaagt
     5401 ctctctccac acctttcagc agtaaatccg agtgaggttg gtgtatgtca accacaccct
     5461 atccccaggc acctcggtgc tgtgcaggtt ggctctggag gggcagagtt gagggcggat
     5521 gttcccttga actctcaagt ttgtggctcg gttcacacta gagcagctct gtaattcttc
     5581 cagtccggct gccaatagca atcagaccct tctcaatgaa ggtgcatcag agcctcttga
     5641 ggctgccttg aagggtccct aagaaacaag gtcacacccg tgccttccag caacggttga
     5701 attcttgttc tctgtgtgtt gtagttattt ttcttttctt tttctttctt tttttttttt
     5761 aagatttatt tattgtatat gagtacactg tagctgtctt cagacacacc agaagagggt
     5821 atggaatctc attacagatg gttgtgagcc accatgtggt tgttgggaat tgaactcagg
     5881 acctcaggaa gagcagtcgg tgctcttaac cactgagcca tctctccagc ccctgtagtt
     5941 atttttctgt tgctatggta aaaataccat aagcaaggtg ccttatagaa gaaaaaaatg
     6001 tttgggctta agattcaaga tgggtaagag ttcagtagaa gggggcagag ccccagtggc
     6061 aggagcagga agctgtgagc ttccttctcg aagcacaagc acaaagccga catagtgaac
     6121 tggaaacggc atgaagtctt taaactctca aagccctttc agagtgacgt acttacccgg
     6181 gccaggctct acctcctaaa cctccccaaa gagcaccatg acaaatccat gagcttgtgg
     6241 gggacattct tgttcaaacc accacgccat gagtcagctg gcacattcgt gagtctttca
     6301 agccagaaga gctgggccct tggcagtgcc aggaaaacag aaaagggcct cttagactgc
     6361 accagctact tcagtctata caggccaggc tgggccctgg agagctctga agtgaagccc
     6421 tgagaaggca ggcttgcttt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     6481 ctgtctgtct gtctgtctgt ctgtctgtct gtcttccaat aacagctagt agactgtgga
     6541 atgaaatcac cattgagaac ttcttggtct gggctggaga aagggtctct tcaaaggaag
     6601 agacaggtat ggggacctcc tgcagtccca cctgggaaag gcatctgtct cagtcacgtg
     6661 gtttttcctc tctgcctgtc tcttgtgatt gtcgccacag cccagcagga gaaagctaaa
     6721 catggcaggg ctccatttgc aggggagttg gacagttcta agtagcactg gtacctaggt
     6781 gggggggaga ggtcctctag aggctaatct gcatatattt tcattcattt gcatgcacgt
     6841 agtgttgcct atgaagcttc ttccagatgc tgaaaataaa ttcaactatt aatattttac
     6901 aaattaaagg agggaggaac cacaaaaaga ccctttcatt tgcagtttaa atttaaaact
     6961 aatcatagag gggttgggga tttatctcag tggtagagcg cttgcccttg gtttggtccc
     7021 cagctccgga aaaaaaaaaa acaacaaaaa aaaaaaaaca aactaatcat agagcccttt
     7081 tccttttcct ctgtctatcc ttccctccct ctctccgggt ttgaccccaa gatttttaat
     7141 acacaggaga caaacacctt aatacaggtt ggggttgggg gatgaattgc tggctgatgt
     7201 tggggacggg gagcgcgaca gttctcacag tgtagcccag gctggccagg aacttgctat
     7261 gtagactagg ttggcctcga gttcaccaag ttctacctcc tgtttccagg agtgctggga
     7321 ttgaaaatat atgctgccaa gttctattag tgtacacgtt ctataaacgt aaaaagaacc
     7381 tattttgaga ccttttcagg gagagacaag agaaaagcgt ggtaaaatct cctgttgcac
     7441 ggtagtctgt ctttttgccc ccaaagaact aactagtaca gtttggcaag gttgggcttt
     7501 gccttctgat gctttttcta aagggaaaac ggactctcac cctggaaaac accagtcttg
     7561 tttgttttct gttcctttag aagtcagccc tggagcggct ggcagcggtg agcacagctc
     7621 tcgggcgttg tgtaaccgcc aggcaatcac gttgcaccca ccgcttccac agactggtaa
     7681 ctgcaataat aaatcggagc ttattcaaat acgagaaacc atcccagcgg gctccaagtc
     7741 acgtgtccag gtcacatggc ctgccagaca gagaaggcgg ctggcaatca ttaactaatg
     7801 ctttctccca gggagaaaaa tgctggcttt aaggaggccg ggacgtcaga attgcaatag
     7861 aagatttcct ctgctgcaag tctccttccc gaagagccat cctaaccaga gctgacagcc
     7921 acggttctga gagccgagac actaagaaga cagatgtgac tttgttgtta cctcagaagc
     7981 gaggcctcca agggaaaggc agctgagccc agtcctgaga cgctgaatga agcctgcccc
     8041 agccttccat cccgcctttt ctacacctca accctcacga ccctcatcct tggtttgcac
     8101 ccttgtaagc acatggaggc aggctgggcc atctgcagtg tggtttcgcc tctggtgtct
     8161 cacttattat cccaacccca cctcttctcc aaggccttta gggcgacctg gcactgctta
     8221 ctgtggtccc ctgctgagcc tcgagtgacg tcctggggag gtgtggaaca ctgatgctca
     8281 tgtcaggctc cgtggagcag gaccgcagcc agcccctgtg acatctataa aaggctgccc
     8341 cacccccgca cacctggtcc tcacgtggag gtggccatgg gaacctgagg gtagtgagtc
     8401 accaggtggg aacccgagga cagtggggga cctttgcaga ggcacaagcc cagcatcacg
     8461 cggtgccaga cagtgcagag gaccctttgt cacgtgattc gcagacgccg gtacaaatct
     8521 ctccttggac tgagtaggtg cttctctgcg tgggggaatg ctgggctcat cctctggaac
     8581 ccagaaggcc gcgattccag aaccgctgct gacagagcgg aggaggctcc ccacctgctg
     8641 gaccaaccgc tgacatccat gttctcaaaa gggctgagtc gctggagcag ctcatttctg
     8701 cacgctgcgg tttcgacttt cctccaagtg catagctgta tgacatctga gaggcagaag
     8761 tcaggctgtc cctggtgcca agacagaggc tgagatgaca tgcattgtcc ctggaagcct
     8821 gccttcttac aacctcctgg gagcatagag ggacctgcct gtcaggcgtc tagcctggtg
     8881 gggaagcccc ttcgatttcc atagcctgaa aattaccgtt ctgtgctacg ggagcagaag
     8941 agtttcgttc cactgttttt ctgtttattc acttttattc cgaacactca gaggtagctt
     9001 aaaagtccac atgttaaaat tttctagaaa agtcacaaag ttgtggcttc ccggcccact
     9061 cttacttcca tctctgagtt agttgtactg cccgtgtttg gagcactcgt tcgtaaacaa
     9121 tacattttaa aagctgtgtc tttcttaatt tagagactcc tggtgttgct atgacagtcg
     9181 aagaatagct ttctccctcc tcaggccttc ttgcctcgca aatttcctga atttcctcct
     9241 gttttacctg ccctccatca tgagatttaa tctaattaaa aaatatattt atgtg
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