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PREDICTED: Rattus norvegicus vacuolar ATPase assembly integral membrane protein Vma21 (LOC103689964), transcript variant X2, mRNA

NCBI Reference Sequence: XM_577054.6

  • Record suppressed. This record was removed as a result of standard genome annotation processing. Please see www.ncbi.nlm.nih.gov/genome/annotation_euk/process/ for more information.

FASTA Graphics 

LOCUS       XM_577054                662 bp    mRNA    linear   ROD 26-JUL-2016
DEFINITION  PREDICTED: Rattus norvegicus vacuolar ATPase assembly integral
            membrane protein Vma21 (LOC103689964), transcript variant X2, mRNA.
ACCESSION   XM_577054
VERSION     XM_577054.6
DBLINK      BioProject: PRJNA12455
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_005116.4) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Aug 7, 2014 this sequence version replaced XM_577054.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Version          :: Rattus norvegicus Annotation Release
                                           106
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 7.1
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="mixed"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="pooled males and females"
                     /note="pooled female animals of strain BN/SsNHsdMCW plus
                     one male of strain SHR (also known as SHR-Akr)"
     gene            1..662
                     /gene="LOC103689964"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 18 ESTs, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 305 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:103689964"
                     /db_xref="RGD:9321656"
     CDS             131..436
                     /gene="LOC103689964"
                     /codon_start=1
                     /product="vacuolar ATPase assembly integral membrane
                     protein Vma21 isoform X2"
                     /protein_id="XP_577054.2"
                     /db_xref="GeneID:103689964"
                     /db_xref="RGD:9321656"
                     /translation="MERLDKAALNALQPPEFRNENSLAATLKTLLFFTALMITVPIGL
                     YFTTKSYIFEGALGMSNRDSYFYAAIVAVVAVHVVLALFVYVAWNEGSRQWREGKQD"
ORIGIN      
        1 tacgtcgcgc caccgggagc gtgtttcagc cggggcactt ccggcgcgac cggcctagta
       61 ctgcaccctc ctagcggccg ctgcgccccg ctaattacct agcacctgct gttgccctcc
      121 cggccacgcc atggagcgtc ttgataaagc ggcactgaac gcgctgcagc ctccagagtt
      181 cagaaatgaa aactctttag ctgcgaccct gaagacactc ctgttcttca cggctttaat
      241 gatcacagtt cctatcgggt tgtattttac aactaaatct tatatatttg aaggtgccct
      301 tggaatgtcc aatagagaca gctattttta tgctgcaatt gttgctgttg ttgctgttca
      361 tgtggttctg gccctgtttg tctatgtggc ctggaatgaa ggctcacgac agtggcgtga
      421 aggcaaacag gattaaagcg aacatcacct tttgatagca tgaaatttat tttttgaata
      481 tgttaaataa ttgtgggata ttgataataa atacattcat ttgaataaaa ttaaaagaac
      541 atggtaaaat caagtcttaa agagtcagtc gcatttggct aaattttgac ccacccaata
      601 atatggttac tttgaacttt gaatctccat ttgcaaatga aaatttggga aagttggata
      661 gg
//
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