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NCBI Reference Sequence: XM_068224603.1
FASTA Graphics
LOCUS XM_068224603 4378 bp mRNA linear VRT 08-SEP-2024 DEFINITION PREDICTED: Danio rerio myocardin related transcription factor Ab (mrtfab), transcript variant X8, mRNA. ACCESSION XM_068224603 VERSION XM_068224603.1 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007123.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_000002035.6-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/15/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4378 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="12" gene 1..4378 /gene="mrtfab" /gene_synonym="fb39e12; mkl1b; wu:fb39e12" /note="myocardin related transcription factor Ab; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 ESTs, 96 long SRA reads, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 66 samples with support for all annotated introns" /db_xref="GeneID:559638" /db_xref="ZFIN:ZDB-GENE-030131-681" CDS 102..3623 /gene="mrtfab" /gene_synonym="fb39e12; mkl1b; wu:fb39e12" /codon_start=1 /product="myocardin related transcription factor Ab isoform X7" /protein_id="XP_068080704.1" /db_xref="GeneID:559638" /db_xref="ZFIN:ZDB-GENE-030131-681" /translation="MLDTNHCLHIDASSFEDQLIQNAEDKMPVSLDCDRHAYHNLKEV LQLKLQQRRTREELVSQGIMPPLKSPAAFHEQRKSLERARTEDYLKRKIRSRPERSEL VRMHILEETSAEPSLQAKQLKLKRARLADDLNDKISHRPGPIELIHKNILPVHALIGT ESPKGESSSLDEDSSDALSPDPQCSQDSPLGLGPQHSPSDMLNMNGDLSPSQFLTQAP PPLLVTSDASPPKNLTSETNISNSSRPPSGHTKFKSSTDRTYQRSKKPKDNKPKVKKL KYHQYIPPDQKNDREPPPQLDSSYAKILHQQQLFLQLQIINQQQQHYNYHTILPAPPK LATEMQQPSTNPGPAPSQTISTSTAVSSNQTGTSRQSQPTVAGAKPSTLPANLDEFKV AELKHELKLRGLTVSGTKNDLIERLKNYQEQNCGSSAAGAPAMKTVPAQLPQVSIQSG PHQHPKDTTVPISAFPLTPTTRVHSTTPPQIMRFSSTSSSPPVSPTPSDRSVTGLSPD EASCNGDVFGEMVSSPLTQLSLHPSPEQPSPIKEESLGQVQSSCSLSRLGTLPAAQPH DPCPLSPLDKDQMLQEKDKQIEELTRMLRQKQRQVEALRSQLEQGKRAAPTEPAVDTE IPMLSNGVEVKVKEEVKEEMDTSEDLQKQIQPLKKIQTQCSQQTLFKLQQIHRLQVQQ QQILVDLPNLQNTQQQEVDQLKVQQEQAKTQVSQQQKTQLLQHHQKVQLLQQQKAQLL QQQQKAQLLQQQQQKAQLLQQQQRTLVQEQQKTQLHQQKKATLLQQQQQQKLQQLIIQ QSQQKQLQANLKQQQKPQNLLQSPQVSQVFVSQQSSTQITTSFPLDILKAHPTPTLVT DSNGNRYLIALTSNSVESLTGKSPQSKSNGRITLQRLQSTPIKLPSQSSTDMTTSANH SQAVREPITKKAGLHVETSSVQESSQPVSAPPSFEPFFCEESNPLNKPTSPPSFKDNV SNNQQIDDLFEILMKSGEISSGFKASQDPSLSDLHSNPPSPSPPPSPLHLSPPAHHPE PMPVPSQQLLDTQNRPCSSTGRLEDFLESTTGAPLLGVEPDSPLTLIDDLHSQMLSTS SILDHPPSPMDTSDLSFSSHPASLDFEDPALDGMDWLGIPVVTGGSNCNGGGLVLAPL SSHTPPSVFSADFLDSPDLQLHWDSCL" polyA_site 4378 /gene="mrtfab" /gene_synonym="fb39e12; mkl1b; wu:fb39e12" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cttgcaccat gcaatctgtt ttcctctctt ttgcaccact ggtggaatat tagtttgact 61 ttgagacctt ttcgaagatt tttaactcac tggatccaaa catgctggac acaaaccact 121 gccttcacat tgatgcttcc tcatttgagg atcagcttat ccaaaatgct gaagataaga 181 tgcctgtgag tctggactgt gacagacatg cctatcacaa cctcaaagaa gttcttcaac 241 tcaaactaca acagagaaga acacgagagg agctggtcag ccaaggaatc atgcctccat 301 tgaagagccc ggctgctttc cacgaacaga ggaaaagtct ggagagagca cgcactgagg 361 attacctgaa gaggaagatt aggagccggc ctgagaggtc agaactggtc aggatgcata 421 tcctcgagga gacttcagct gagccttcac tgcaggccaa gcagctgaag ctgaaaagag 481 cccgtttggc cgacgatctt aatgataaaa tctcccatcg ccctggtccc atcgagctca 541 tccacaagaa catcctgccg gtgcatgcac tcattggtac agagtctccg aagggtgaga 601 gctcatcact ggatgaggac agcagtgacg ctctttctcc agatccccag tgcagtcagg 661 actctccgct gggtctcggc cctcaacact ccccctctga tatgctgaac atgaacggag 721 acctctcacc tagtcagttc ctcactcagg ctcctccacc tcttcttgtc acgtctgacg 781 cctctccacc aaaaaatcta accagtgaaa ctaacatttc aaactcttcc cgtccaccat 841 caggacatac aaagttcaag tccagcacag atcggaccta tcaacgatca aagaaaccca 901 aagataacaa gcccaaagta aagaagctga aatatcacca gtatatcccg cctgaccaga 961 agaacgaccg ggagccaccg cctcagctgg actcctcgta cgccaaaatc ctccaccagc 1021 agcagctttt ccttcagctt cagatcatca accagcagca gcagcactac aactaccaca 1081 ccatcctacc cgcacctccg aaacttgcta ctgaaatgca gcagccatcc acaaatcctg 1141 gccctgcccc ttcccagact atttccacct ccactgcagt ctcctcaaat cagactggaa 1201 ccagtcgtca gagccagcct acagtggcag gagccaaacc cagcactttg ccagcaaacc 1261 tagatgaatt caaagttgct gaacttaaac atgaactcaa gttgaggggt ttgactgtat 1321 cgggcactaa gaacgatctc attgaacgcc tgaagaacta ccaggagcag aactgtggtt 1381 catcagcagc aggggctcca gcaatgaaaa cagtgcctgc tcagttacca caggtgtcga 1441 ttcagtctgg tccacatcaa caccccaaag acacaactgt accaatttca gcctttccct 1501 taacgcctac cacaagggtc cacagcacaa caccacctca gatcatgcgt ttcagcagca 1561 ccagctcctc tcctcctgtg tctcctaccc catctgaccg ctctgtgact ggactgagtc 1621 cagatgaggc cagctgcaac ggtgatgtgt ttggagaaat ggttagttct cctctcaccc 1681 agctcagttt gcacccctct ccagagcagc cttccccaat taaagaggag tctctagggc 1741 aggtgcagtc ctcctgcagt ctctctcgtc tggggacgct gccagccgca cagcctcacg 1801 atccatgtcc attgtctcct ctggacaaag accaaatgct tcaagagaaa gacaagcaga 1861 tcgaggagct gacgcgcatg ttgagacaga agcagaggca ggtggaggcc ttgcgttctc 1921 agctggagca gggtaagcgt gcagcaccaa cagagcctgc agtcgacacc gaaataccca 1981 tgctgtctaa cggggtggaa gtaaaggtga aggaagaggt caaggaagaa atggacacct 2041 cggaggacct gcagaagcaa atccagcctc tgaagaagat acagactcag tgttcacagc 2101 agactctctt caagctgcag cagattcaca gactgcaggt gcagcagcag caaatactgg 2161 tggacctacc aaatctacag aatacacagc agcaggaagt ggaccaactg aaagtgcagc 2221 aagagcaagc aaagacacag gtgtcgcagc agcagaagac gcagttgctg caacatcacc 2281 agaaagtgca attactgcaa cagcagaagg cacagttact gcagcagcag cagaaagcgc 2341 agctactaca acagcagcag cagaaagcgc agcttctaca acagcaacag aggacactgg 2401 tgcaggagca gcagaaaaca caactgcatc agcaaaagaa ggcgacgtta ctgcaacagc 2461 agcaacaaca aaagctgcag cagctcatca tccagcaaag ccagcaaaag cagctgcaag 2521 ccaatctgaa gcagcagcag aagccacaaa atctgttaca gagcccacag gtttcacagg 2581 tgtttgtcag ccagcagtct agtactcaga ttactacgtc tttcccactg gatatcctga 2641 aagctcatcc cactcccaca ctggtcactg acagcaacgg caaccgctat ctgattgcac 2701 ttaccagtaa tagtgtggag agtctgacgg gaaagtctcc tcagagcaaa tctaatggac 2761 ggattactct acagagattg cagtcgaccc ctatcaagct ccctagccaa tcatctactg 2821 atatgacaac ttctgccaat cattcacaag ctgtccgaga gcccatcacc aagaaagcag 2881 ggctccacgt agaaacctcc agtgttcagg agagcagtca gcctgtgtct gctccaccaa 2941 gcttcgagcc cttcttctgt gaggaatcaa acccactgaa caaacccacc tctcctcctt 3001 catttaagga taatgtctct aacaaccagc aaatagatga tctgtttgaa attctgatga 3061 agagtggaga aatttcatct ggatttaagg ccagtcaaga cccctccctt tctgacctcc 3121 actccaaccc gccctctcca tcccctcctc catctcccct ccacctctct ccaccagcac 3181 atcaccctga acccatgccc gtcccatccc agcagctcct ggacactcaa aacaggccct 3241 gctcctccac cggccgcctc gaggactttc tagagagcac aaccggcgct cctctcctcg 3301 gtgtggagcc ggatagcccg ttaaccctaa tcgatgacct acacagtcaa atgctgagca 3361 cttccagtat tctggaccac ccgccatccc caatggacac cagtgacctg agcttctcgt 3421 cccatccggc cagcctggac ttcgaagacc ctgctctgga tggaatggat tggctgggca 3481 tacccgtggt cacagggggc agtaattgta atggcggggg tctggtcctc gcccctctga 3541 gctcacacac cccacccagt gtcttttcag cagacttttt ggacagtcca gatctgcagc 3601 tccactggga ctcctgtttg tagcttctgg tcttaattcg ctcaacgaca cacacaattt 3661 agcacattca accttactgt gtattaagca gtacacaaaa cactccagac gcacacgctg 3721 ttaattatgc ttcacgtttt ctttccttca tattccgaag ccgaatggta tttaaacagt 3781 tcctgcgtct gatagcactg acttttaagc tctcgttcac tgcactcaaa taatcacatg 3841 atggcgctgt ttcttttgta acagagacca atcaggaccc tgaaaacagc tcaaagaatc 3901 ccttctttgg tctaaatatc agatgagttg tctatgctgg ttagttagta caatctttaa 3961 agcaccatat agtgttatgt ctgcccatgg taataaagct atgacctcat aaacattata 4021 tatgaggcca tttctgctcc acaagttgtt acatgcaagc taattggcag aaagatacag 4081 gatatcataa acctccttga aacccgttag ttcttccaac attgcactta agccgacccg 4141 actggtgctc tggtcaacac gacccaatgt aatgggctct gcagggaacc aggtttggtg 4201 acgttcacca gatctctatg cattgctgta gttaggatca tgtattgatg aaacctttgt 4261 tctttctgct ctgattctag cgattcgctg gtggaggtca gtgctggggt ttcaggtttc 4321 agagtatttg gaacttcttg ttttttaaaa aaagaaaaaa aatgaaagga aaaactgc //
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