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PREDICTED: Danio rerio myocardin related transcription factor Ab (mrtfab), transcript variant X8, mRNA

NCBI Reference Sequence: XM_068224603.1

FASTA Graphics 

LOCUS       XM_068224603            4378 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio myocardin related transcription factor Ab
            (mrtfab), transcript variant X8, mRNA.
ACCESSION   XM_068224603
VERSION     XM_068224603.1
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007123.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4378
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="12"
     gene            1..4378
                     /gene="mrtfab"
                     /gene_synonym="fb39e12; mkl1b; wu:fb39e12"
                     /note="myocardin related transcription factor Ab; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 9 ESTs, 96 long SRA reads, 16 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 66 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:559638"
                     /db_xref="ZFIN:ZDB-GENE-030131-681"
     CDS             102..3623
                     /gene="mrtfab"
                     /gene_synonym="fb39e12; mkl1b; wu:fb39e12"
                     /codon_start=1
                     /product="myocardin related transcription factor Ab
                     isoform X7"
                     /protein_id="XP_068080704.1"
                     /db_xref="GeneID:559638"
                     /db_xref="ZFIN:ZDB-GENE-030131-681"
                     /translation="MLDTNHCLHIDASSFEDQLIQNAEDKMPVSLDCDRHAYHNLKEV
                     LQLKLQQRRTREELVSQGIMPPLKSPAAFHEQRKSLERARTEDYLKRKIRSRPERSEL
                     VRMHILEETSAEPSLQAKQLKLKRARLADDLNDKISHRPGPIELIHKNILPVHALIGT
                     ESPKGESSSLDEDSSDALSPDPQCSQDSPLGLGPQHSPSDMLNMNGDLSPSQFLTQAP
                     PPLLVTSDASPPKNLTSETNISNSSRPPSGHTKFKSSTDRTYQRSKKPKDNKPKVKKL
                     KYHQYIPPDQKNDREPPPQLDSSYAKILHQQQLFLQLQIINQQQQHYNYHTILPAPPK
                     LATEMQQPSTNPGPAPSQTISTSTAVSSNQTGTSRQSQPTVAGAKPSTLPANLDEFKV
                     AELKHELKLRGLTVSGTKNDLIERLKNYQEQNCGSSAAGAPAMKTVPAQLPQVSIQSG
                     PHQHPKDTTVPISAFPLTPTTRVHSTTPPQIMRFSSTSSSPPVSPTPSDRSVTGLSPD
                     EASCNGDVFGEMVSSPLTQLSLHPSPEQPSPIKEESLGQVQSSCSLSRLGTLPAAQPH
                     DPCPLSPLDKDQMLQEKDKQIEELTRMLRQKQRQVEALRSQLEQGKRAAPTEPAVDTE
                     IPMLSNGVEVKVKEEVKEEMDTSEDLQKQIQPLKKIQTQCSQQTLFKLQQIHRLQVQQ
                     QQILVDLPNLQNTQQQEVDQLKVQQEQAKTQVSQQQKTQLLQHHQKVQLLQQQKAQLL
                     QQQQKAQLLQQQQQKAQLLQQQQRTLVQEQQKTQLHQQKKATLLQQQQQQKLQQLIIQ
                     QSQQKQLQANLKQQQKPQNLLQSPQVSQVFVSQQSSTQITTSFPLDILKAHPTPTLVT
                     DSNGNRYLIALTSNSVESLTGKSPQSKSNGRITLQRLQSTPIKLPSQSSTDMTTSANH
                     SQAVREPITKKAGLHVETSSVQESSQPVSAPPSFEPFFCEESNPLNKPTSPPSFKDNV
                     SNNQQIDDLFEILMKSGEISSGFKASQDPSLSDLHSNPPSPSPPPSPLHLSPPAHHPE
                     PMPVPSQQLLDTQNRPCSSTGRLEDFLESTTGAPLLGVEPDSPLTLIDDLHSQMLSTS
                     SILDHPPSPMDTSDLSFSSHPASLDFEDPALDGMDWLGIPVVTGGSNCNGGGLVLAPL
                     SSHTPPSVFSADFLDSPDLQLHWDSCL"
     polyA_site      4378
                     /gene="mrtfab"
                     /gene_synonym="fb39e12; mkl1b; wu:fb39e12"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cttgcaccat gcaatctgtt ttcctctctt ttgcaccact ggtggaatat tagtttgact
       61 ttgagacctt ttcgaagatt tttaactcac tggatccaaa catgctggac acaaaccact
      121 gccttcacat tgatgcttcc tcatttgagg atcagcttat ccaaaatgct gaagataaga
      181 tgcctgtgag tctggactgt gacagacatg cctatcacaa cctcaaagaa gttcttcaac
      241 tcaaactaca acagagaaga acacgagagg agctggtcag ccaaggaatc atgcctccat
      301 tgaagagccc ggctgctttc cacgaacaga ggaaaagtct ggagagagca cgcactgagg
      361 attacctgaa gaggaagatt aggagccggc ctgagaggtc agaactggtc aggatgcata
      421 tcctcgagga gacttcagct gagccttcac tgcaggccaa gcagctgaag ctgaaaagag
      481 cccgtttggc cgacgatctt aatgataaaa tctcccatcg ccctggtccc atcgagctca
      541 tccacaagaa catcctgccg gtgcatgcac tcattggtac agagtctccg aagggtgaga
      601 gctcatcact ggatgaggac agcagtgacg ctctttctcc agatccccag tgcagtcagg
      661 actctccgct gggtctcggc cctcaacact ccccctctga tatgctgaac atgaacggag
      721 acctctcacc tagtcagttc ctcactcagg ctcctccacc tcttcttgtc acgtctgacg
      781 cctctccacc aaaaaatcta accagtgaaa ctaacatttc aaactcttcc cgtccaccat
      841 caggacatac aaagttcaag tccagcacag atcggaccta tcaacgatca aagaaaccca
      901 aagataacaa gcccaaagta aagaagctga aatatcacca gtatatcccg cctgaccaga
      961 agaacgaccg ggagccaccg cctcagctgg actcctcgta cgccaaaatc ctccaccagc
     1021 agcagctttt ccttcagctt cagatcatca accagcagca gcagcactac aactaccaca
     1081 ccatcctacc cgcacctccg aaacttgcta ctgaaatgca gcagccatcc acaaatcctg
     1141 gccctgcccc ttcccagact atttccacct ccactgcagt ctcctcaaat cagactggaa
     1201 ccagtcgtca gagccagcct acagtggcag gagccaaacc cagcactttg ccagcaaacc
     1261 tagatgaatt caaagttgct gaacttaaac atgaactcaa gttgaggggt ttgactgtat
     1321 cgggcactaa gaacgatctc attgaacgcc tgaagaacta ccaggagcag aactgtggtt
     1381 catcagcagc aggggctcca gcaatgaaaa cagtgcctgc tcagttacca caggtgtcga
     1441 ttcagtctgg tccacatcaa caccccaaag acacaactgt accaatttca gcctttccct
     1501 taacgcctac cacaagggtc cacagcacaa caccacctca gatcatgcgt ttcagcagca
     1561 ccagctcctc tcctcctgtg tctcctaccc catctgaccg ctctgtgact ggactgagtc
     1621 cagatgaggc cagctgcaac ggtgatgtgt ttggagaaat ggttagttct cctctcaccc
     1681 agctcagttt gcacccctct ccagagcagc cttccccaat taaagaggag tctctagggc
     1741 aggtgcagtc ctcctgcagt ctctctcgtc tggggacgct gccagccgca cagcctcacg
     1801 atccatgtcc attgtctcct ctggacaaag accaaatgct tcaagagaaa gacaagcaga
     1861 tcgaggagct gacgcgcatg ttgagacaga agcagaggca ggtggaggcc ttgcgttctc
     1921 agctggagca gggtaagcgt gcagcaccaa cagagcctgc agtcgacacc gaaataccca
     1981 tgctgtctaa cggggtggaa gtaaaggtga aggaagaggt caaggaagaa atggacacct
     2041 cggaggacct gcagaagcaa atccagcctc tgaagaagat acagactcag tgttcacagc
     2101 agactctctt caagctgcag cagattcaca gactgcaggt gcagcagcag caaatactgg
     2161 tggacctacc aaatctacag aatacacagc agcaggaagt ggaccaactg aaagtgcagc
     2221 aagagcaagc aaagacacag gtgtcgcagc agcagaagac gcagttgctg caacatcacc
     2281 agaaagtgca attactgcaa cagcagaagg cacagttact gcagcagcag cagaaagcgc
     2341 agctactaca acagcagcag cagaaagcgc agcttctaca acagcaacag aggacactgg
     2401 tgcaggagca gcagaaaaca caactgcatc agcaaaagaa ggcgacgtta ctgcaacagc
     2461 agcaacaaca aaagctgcag cagctcatca tccagcaaag ccagcaaaag cagctgcaag
     2521 ccaatctgaa gcagcagcag aagccacaaa atctgttaca gagcccacag gtttcacagg
     2581 tgtttgtcag ccagcagtct agtactcaga ttactacgtc tttcccactg gatatcctga
     2641 aagctcatcc cactcccaca ctggtcactg acagcaacgg caaccgctat ctgattgcac
     2701 ttaccagtaa tagtgtggag agtctgacgg gaaagtctcc tcagagcaaa tctaatggac
     2761 ggattactct acagagattg cagtcgaccc ctatcaagct ccctagccaa tcatctactg
     2821 atatgacaac ttctgccaat cattcacaag ctgtccgaga gcccatcacc aagaaagcag
     2881 ggctccacgt agaaacctcc agtgttcagg agagcagtca gcctgtgtct gctccaccaa
     2941 gcttcgagcc cttcttctgt gaggaatcaa acccactgaa caaacccacc tctcctcctt
     3001 catttaagga taatgtctct aacaaccagc aaatagatga tctgtttgaa attctgatga
     3061 agagtggaga aatttcatct ggatttaagg ccagtcaaga cccctccctt tctgacctcc
     3121 actccaaccc gccctctcca tcccctcctc catctcccct ccacctctct ccaccagcac
     3181 atcaccctga acccatgccc gtcccatccc agcagctcct ggacactcaa aacaggccct
     3241 gctcctccac cggccgcctc gaggactttc tagagagcac aaccggcgct cctctcctcg
     3301 gtgtggagcc ggatagcccg ttaaccctaa tcgatgacct acacagtcaa atgctgagca
     3361 cttccagtat tctggaccac ccgccatccc caatggacac cagtgacctg agcttctcgt
     3421 cccatccggc cagcctggac ttcgaagacc ctgctctgga tggaatggat tggctgggca
     3481 tacccgtggt cacagggggc agtaattgta atggcggggg tctggtcctc gcccctctga
     3541 gctcacacac cccacccagt gtcttttcag cagacttttt ggacagtcca gatctgcagc
     3601 tccactggga ctcctgtttg tagcttctgg tcttaattcg ctcaacgaca cacacaattt
     3661 agcacattca accttactgt gtattaagca gtacacaaaa cactccagac gcacacgctg
     3721 ttaattatgc ttcacgtttt ctttccttca tattccgaag ccgaatggta tttaaacagt
     3781 tcctgcgtct gatagcactg acttttaagc tctcgttcac tgcactcaaa taatcacatg
     3841 atggcgctgt ttcttttgta acagagacca atcaggaccc tgaaaacagc tcaaagaatc
     3901 ccttctttgg tctaaatatc agatgagttg tctatgctgg ttagttagta caatctttaa
     3961 agcaccatat agtgttatgt ctgcccatgg taataaagct atgacctcat aaacattata
     4021 tatgaggcca tttctgctcc acaagttgtt acatgcaagc taattggcag aaagatacag
     4081 gatatcataa acctccttga aacccgttag ttcttccaac attgcactta agccgacccg
     4141 actggtgctc tggtcaacac gacccaatgt aatgggctct gcagggaacc aggtttggtg
     4201 acgttcacca gatctctatg cattgctgta gttaggatca tgtattgatg aaacctttgt
     4261 tctttctgct ctgattctag cgattcgctg gtggaggtca gtgctggggt ttcaggtttc
     4321 agagtatttg gaacttcttg ttttttaaaa aaagaaaaaa aatgaaagga aaaactgc
//
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