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PREDICTED: Danio rerio LSM14A mRNA processing body assembly factor b (lsm14ab), transcript variant X3, mRNA

NCBI Reference Sequence: XM_068214752.1

FASTA Graphics 

LOCUS       XM_068214752            3398 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio LSM14A mRNA processing body assembly factor
            b (lsm14ab), transcript variant X3, mRNA.
ACCESSION   XM_068214752
VERSION     XM_068214752.1
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007129.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3398
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="18"
     gene            1..3398
                     /gene="lsm14ab"
                     /gene_synonym="wu:fc55d12; zgc:55754; zgc:77202"
                     /note="LSM14A mRNA processing body assembly factor b;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 31 ESTs, 568 long SRA reads, 3 Proteins,
                     and 100% coverage of the annotated genomic feature by
                     RNAseq alignments, including 154 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:406800"
                     /db_xref="ZFIN:ZDB-GENE-040426-2462"
     misc_feature    1
                     /gene="lsm14ab"
                     /gene_synonym="wu:fc55d12; zgc:55754; zgc:77202"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             159..1502
                     /gene="lsm14ab"
                     /gene_synonym="wu:fc55d12; zgc:55754; zgc:77202"
                     /codon_start=1
                     /product="LSM14A mRNA processing body assembly factor b
                     isoform X3"
                     /protein_id="XP_068070853.1"
                     /db_xref="GeneID:406800"
                     /db_xref="ZFIN:ZDB-GENE-040426-2462"
                     /translation="MSGGTPYIGSKISLISKAEIRYEGVLYTIDTENSTVALAKVKSF
                     GTEDRPTDRPIPPRDDVFEYIIFRGSDIKDLTVCEPPKPTCNLPQDPAIVQSSLASTA
                     GPTAPSFQSYSPFSRAPYSQFTSTPLVPQAFGAAVTAGRSSPSLEPTRKTPTLEHAVQ
                     TATVAQPAAATSAASQKPAVSRPILLTQKSAEIQELKASEVQKVPRPESDSNRPDNKD
                     PNKRHSGGGGAPPMRRGRGSGGGGGGQRGRGRFNGRRDGPMKFEKDFDFESANAQFNK
                     EEIDREFQSKLKIKDEKSEKTLNGEEKTDSGVETQNSEGNADEEDPLGPNCYYDKSKS
                     FFDNISCDDTRKEKTAAGAFGRERRQTWAEERRMNAETFGIPLRRGRGGFRGRGGGMG
                     YRGGRGRAASRGSFMPSRGGGAGFGGGAGFRGGFRGGRGGREFSDFEYRENKVAA"
     polyA_site      3398
                     /gene="lsm14ab"
                     /gene_synonym="wu:fc55d12; zgc:55754; zgc:77202"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agtgcggagg aaaatgaact cggccatgtc gtgctaaaca caggctgaaa gaaaacatca
       61 aatcagatca ccaaaatcgc tcttcattcg ggtgaaaccg agattaaaga agccaagagg
      121 agttgaatat tcgcgcggga gtgaaataaa gcgggaaaat gagcggaggg acgccttata
      181 tcggcagcaa gatcagcctg atctcaaagg ccgagatccg atatgaggga gttttataca
      241 ccatcgacac tgagaacagc actgtagctc tggcgaaagt caagtctttt ggcactgagg
      301 atcgtcccac agacaggcct atcccacctc gagatgatgt ctttgagtac atcatattta
      361 ggggaagtga catcaaggac ttgacagtgt gcgagccccc caaacccacc tgcaaccttc
      421 ctcaggatcc tgcaatcgtg cagtcctctt tggcatccac cgccggcccc acagcacctt
      481 ctttccagtc gtacagtccc ttcagtcgcg ccccgtacag ccagttcacc tccactccgc
      541 tggtaccaca ggcattcgga gctgcagtca ccgccggtcg ttccagccca tctctagagc
      601 ccacgaggaa gaccccgacc ctggagcatg cagtccagac ggctacggtc gctcaacctg
      661 cggctgccac cagtgcagcg agccagaagc ctgcagtcag ccgacccatc cttctcaccc
      721 agaaatctgc tgaaatccag gagctaaaag catcggaagt tcagaaggtt cctcggccag
      781 aatcggactc aaacaggcct gataacaaag acccaaacaa acggcactct ggaggaggtg
      841 gtgctcctcc aatgagaagg gggcggggca gtggtggtgg aggtggtggt cagcgtgggc
      901 ggggcaggtt taatggccgt agagatggac caatgaaatt tgagaaggat tttgattttg
      961 aaagtgccaa tgcccagttc aacaaggaag agattgaccg cgagttccaa agcaaactga
     1021 agattaaaga tgagaagtca gagaagaccc tgaatggaga ggagaagact gattcaggtg
     1081 tggagaccca aaacagtgaa ggaaacgcag atgaagagga tccactggga cccaactgtt
     1141 attatgacaa atcaaagtcg ttcttcgaca acatctcctg tgacgacacc agaaaggaga
     1201 aaacagcagc aggtgctttt ggaagggaac ggaggcagac ctgggcggag gagaggagga
     1261 tgaatgcaga aacgtttggt attccactgc gtcgtggtcg tggtggtttc cgtggccgag
     1321 gcggtgggat gggttatcgc ggtggacgcg ggcgcgcagc cagcagaggc tccttcatgc
     1381 catcccgtgg gggcggagct ggatttgggg gcggagccgg attcaggggc ggattcagag
     1441 gtggcagagg aggccgagag ttctctgact ttgagtacag ggagaacaaa gtggcggcgt
     1501 agtccaaccc gaaggccaga tcatccgaac agccaagaat ctccgctcat caccgtctag
     1561 attaacgctt tggttttgac tccagactaa cagggacagc ctctctctgt tgaacaccag
     1621 cgcaggtctc acgcctgcct tcagctggac acgcagcttt cagtttattt cctcctccct
     1681 tttttttaga aaaagaaaaa aacccatttg atgttttttg gaaacgtttg ctctgcgttt
     1741 gatacgttct gaggggagaa tttgtgtaca aaacgcccgt ggaacgacga cagtgatttt
     1801 tctggtattt tttgcatcaa gctttagttc ctttcgtaat aaccagagga tggtgtttga
     1861 tattctgtta ggtgtacaga aaccccgctg aaactgtgag cgctcctcag tcaaatagct
     1921 tttgtttatt tttattttat tctctgttgg atctgttatc tattgaagca gcagaacgca
     1981 gtcgagagat gtccgagcta atcgaaatga aataaacgtt cagtttaact cagacaagcc
     2041 cgatggattc acatccaagc ctgtttggtt ctcattcgtc tgttaaacgt agatgctttt
     2101 tcttcatgct aagtaggact agattattgt tattatattt acagataaac atcttctatt
     2161 tggtgcattt tgcccagtaa tcgcttcatc gtctagctat aggtcagtta aaggaaaaca
     2221 catcctggtt tttgattgaa tgtatggatg aattcaatgt tttggttctc tctatgcagg
     2281 actagactgc tgttctgtct ttaaaatgta ttttgatatt ccagtgccag ttattcttgc
     2341 cttttgatgt tgattatgtc aatttccaag agggcttttt ttgatataat aatctcaaca
     2401 cgacgccctc aacgacgagc ccatcactgt ttaacgtcac gatcttctgg aaagatcctg
     2461 aaccctttaa gaatccgatt ggatgtgttg aaattgtgtt catgtgcact ttaaagacga
     2521 acgccgcgag tctcacatga taatgcgaaa gcaaatctga cgtcattacg taaagccaga
     2581 tgaaccgaag gccaatagtt gctcgttttc agtatttcag catacagaca tagtgataaa
     2641 atgcatcgtt tagctggata aaacatttag cgtcacgttt tcactcaatt aagaagttcc
     2701 tggtttgtga atagttatct gtttgataca ctcgtgtgta atgtgttatt tcaggtacca
     2761 gccgtctatt gctctgtttg tttacccagc ggccccgtct cttccccatt gaatgtcact
     2821 gaagcactag ttcctgcact gttaaatggg agtcagttat tatttgctgt gcttcgtatt
     2881 tttaatttgt gtccagacat ccaaagactg attaggggat aactttagga ggagaagcgc
     2941 tctctctctc tcactctcgg atggctctgt gttattatgc cgtctcgtct gtctcatagt
     3001 ttatttgcat tcgctccctt taaaaaaaaa aagcactacg atttgcagag atgtcccgct
     3061 ggcagctaga ggaacgcagt ctgaccgatc actccgggtt tgataggaag cgaatctgag
     3121 cagggggcag attttggtgc tgaatttgga ctggagatgt gaatgaatcc agtccggcgt
     3181 tgtgtgagat gtgaacggaa gtgcaggacg tgtgtcatgt attaaggggc ttgatgtgat
     3241 ttgttcagac taactctgga ggagtttgat tggcaggttt attttgtttt tttatttttc
     3301 tgaattaaag cagttgtaca tggtgtgctc ttagagggct tcaaacgggg gcaaactgag
     3361 gtttttattc aacaagagaa ataaatagtt gttcagta
//
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