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NCBI Reference Sequence: XM_068214752.1
FASTA Graphics
LOCUS XM_068214752 3398 bp mRNA linear VRT 08-SEP-2024 DEFINITION PREDICTED: Danio rerio LSM14A mRNA processing body assembly factor b (lsm14ab), transcript variant X3, mRNA. ACCESSION XM_068214752 VERSION XM_068214752.1 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007129.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_000002035.6-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/15/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3398 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="18" gene 1..3398 /gene="lsm14ab" /gene_synonym="wu:fc55d12; zgc:55754; zgc:77202" /note="LSM14A mRNA processing body assembly factor b; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 ESTs, 568 long SRA reads, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 154 samples with support for all annotated introns" /db_xref="GeneID:406800" /db_xref="ZFIN:ZDB-GENE-040426-2462" misc_feature 1 /gene="lsm14ab" /gene_synonym="wu:fc55d12; zgc:55754; zgc:77202" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 159..1502 /gene="lsm14ab" /gene_synonym="wu:fc55d12; zgc:55754; zgc:77202" /codon_start=1 /product="LSM14A mRNA processing body assembly factor b isoform X3" /protein_id="XP_068070853.1" /db_xref="GeneID:406800" /db_xref="ZFIN:ZDB-GENE-040426-2462" /translation="MSGGTPYIGSKISLISKAEIRYEGVLYTIDTENSTVALAKVKSF GTEDRPTDRPIPPRDDVFEYIIFRGSDIKDLTVCEPPKPTCNLPQDPAIVQSSLASTA GPTAPSFQSYSPFSRAPYSQFTSTPLVPQAFGAAVTAGRSSPSLEPTRKTPTLEHAVQ TATVAQPAAATSAASQKPAVSRPILLTQKSAEIQELKASEVQKVPRPESDSNRPDNKD PNKRHSGGGGAPPMRRGRGSGGGGGGQRGRGRFNGRRDGPMKFEKDFDFESANAQFNK EEIDREFQSKLKIKDEKSEKTLNGEEKTDSGVETQNSEGNADEEDPLGPNCYYDKSKS FFDNISCDDTRKEKTAAGAFGRERRQTWAEERRMNAETFGIPLRRGRGGFRGRGGGMG YRGGRGRAASRGSFMPSRGGGAGFGGGAGFRGGFRGGRGGREFSDFEYRENKVAA" polyA_site 3398 /gene="lsm14ab" /gene_synonym="wu:fc55d12; zgc:55754; zgc:77202" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agtgcggagg aaaatgaact cggccatgtc gtgctaaaca caggctgaaa gaaaacatca 61 aatcagatca ccaaaatcgc tcttcattcg ggtgaaaccg agattaaaga agccaagagg 121 agttgaatat tcgcgcggga gtgaaataaa gcgggaaaat gagcggaggg acgccttata 181 tcggcagcaa gatcagcctg atctcaaagg ccgagatccg atatgaggga gttttataca 241 ccatcgacac tgagaacagc actgtagctc tggcgaaagt caagtctttt ggcactgagg 301 atcgtcccac agacaggcct atcccacctc gagatgatgt ctttgagtac atcatattta 361 ggggaagtga catcaaggac ttgacagtgt gcgagccccc caaacccacc tgcaaccttc 421 ctcaggatcc tgcaatcgtg cagtcctctt tggcatccac cgccggcccc acagcacctt 481 ctttccagtc gtacagtccc ttcagtcgcg ccccgtacag ccagttcacc tccactccgc 541 tggtaccaca ggcattcgga gctgcagtca ccgccggtcg ttccagccca tctctagagc 601 ccacgaggaa gaccccgacc ctggagcatg cagtccagac ggctacggtc gctcaacctg 661 cggctgccac cagtgcagcg agccagaagc ctgcagtcag ccgacccatc cttctcaccc 721 agaaatctgc tgaaatccag gagctaaaag catcggaagt tcagaaggtt cctcggccag 781 aatcggactc aaacaggcct gataacaaag acccaaacaa acggcactct ggaggaggtg 841 gtgctcctcc aatgagaagg gggcggggca gtggtggtgg aggtggtggt cagcgtgggc 901 ggggcaggtt taatggccgt agagatggac caatgaaatt tgagaaggat tttgattttg 961 aaagtgccaa tgcccagttc aacaaggaag agattgaccg cgagttccaa agcaaactga 1021 agattaaaga tgagaagtca gagaagaccc tgaatggaga ggagaagact gattcaggtg 1081 tggagaccca aaacagtgaa ggaaacgcag atgaagagga tccactggga cccaactgtt 1141 attatgacaa atcaaagtcg ttcttcgaca acatctcctg tgacgacacc agaaaggaga 1201 aaacagcagc aggtgctttt ggaagggaac ggaggcagac ctgggcggag gagaggagga 1261 tgaatgcaga aacgtttggt attccactgc gtcgtggtcg tggtggtttc cgtggccgag 1321 gcggtgggat gggttatcgc ggtggacgcg ggcgcgcagc cagcagaggc tccttcatgc 1381 catcccgtgg gggcggagct ggatttgggg gcggagccgg attcaggggc ggattcagag 1441 gtggcagagg aggccgagag ttctctgact ttgagtacag ggagaacaaa gtggcggcgt 1501 agtccaaccc gaaggccaga tcatccgaac agccaagaat ctccgctcat caccgtctag 1561 attaacgctt tggttttgac tccagactaa cagggacagc ctctctctgt tgaacaccag 1621 cgcaggtctc acgcctgcct tcagctggac acgcagcttt cagtttattt cctcctccct 1681 tttttttaga aaaagaaaaa aacccatttg atgttttttg gaaacgtttg ctctgcgttt 1741 gatacgttct gaggggagaa tttgtgtaca aaacgcccgt ggaacgacga cagtgatttt 1801 tctggtattt tttgcatcaa gctttagttc ctttcgtaat aaccagagga tggtgtttga 1861 tattctgtta ggtgtacaga aaccccgctg aaactgtgag cgctcctcag tcaaatagct 1921 tttgtttatt tttattttat tctctgttgg atctgttatc tattgaagca gcagaacgca 1981 gtcgagagat gtccgagcta atcgaaatga aataaacgtt cagtttaact cagacaagcc 2041 cgatggattc acatccaagc ctgtttggtt ctcattcgtc tgttaaacgt agatgctttt 2101 tcttcatgct aagtaggact agattattgt tattatattt acagataaac atcttctatt 2161 tggtgcattt tgcccagtaa tcgcttcatc gtctagctat aggtcagtta aaggaaaaca 2221 catcctggtt tttgattgaa tgtatggatg aattcaatgt tttggttctc tctatgcagg 2281 actagactgc tgttctgtct ttaaaatgta ttttgatatt ccagtgccag ttattcttgc 2341 cttttgatgt tgattatgtc aatttccaag agggcttttt ttgatataat aatctcaaca 2401 cgacgccctc aacgacgagc ccatcactgt ttaacgtcac gatcttctgg aaagatcctg 2461 aaccctttaa gaatccgatt ggatgtgttg aaattgtgtt catgtgcact ttaaagacga 2521 acgccgcgag tctcacatga taatgcgaaa gcaaatctga cgtcattacg taaagccaga 2581 tgaaccgaag gccaatagtt gctcgttttc agtatttcag catacagaca tagtgataaa 2641 atgcatcgtt tagctggata aaacatttag cgtcacgttt tcactcaatt aagaagttcc 2701 tggtttgtga atagttatct gtttgataca ctcgtgtgta atgtgttatt tcaggtacca 2761 gccgtctatt gctctgtttg tttacccagc ggccccgtct cttccccatt gaatgtcact 2821 gaagcactag ttcctgcact gttaaatggg agtcagttat tatttgctgt gcttcgtatt 2881 tttaatttgt gtccagacat ccaaagactg attaggggat aactttagga ggagaagcgc 2941 tctctctctc tcactctcgg atggctctgt gttattatgc cgtctcgtct gtctcatagt 3001 ttatttgcat tcgctccctt taaaaaaaaa aagcactacg atttgcagag atgtcccgct 3061 ggcagctaga ggaacgcagt ctgaccgatc actccgggtt tgataggaag cgaatctgag 3121 cagggggcag attttggtgc tgaatttgga ctggagatgt gaatgaatcc agtccggcgt 3181 tgtgtgagat gtgaacggaa gtgcaggacg tgtgtcatgt attaaggggc ttgatgtgat 3241 ttgttcagac taactctgga ggagtttgat tggcaggttt attttgtttt tttatttttc 3301 tgaattaaag cagttgtaca tggtgtgctc ttagagggct tcaaacgggg gcaaactgag 3361 gtttttattc aacaagagaa ataaatagtt gttcagta //
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