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NCBI Reference Sequence: XM_063288140.1
FASTA Graphics
LOCUS XM_063288140 4847 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta (Pik3cd), transcript variant X20, mRNA. ACCESSION XM_063288140 VERSION XM_063288140.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086023) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4847 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="5" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..4847 /gene="Pik3cd" /note="phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 mRNAs, 10 ESTs, 63 long SRA reads, 5 Proteins" /db_xref="GeneID:366508" /db_xref="RGD:1310990" CDS 103..3237 /gene="Pik3cd" /codon_start=1 /product="phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform isoform X6" /protein_id="XP_063144210.1" /db_xref="GeneID:366508" /db_xref="RGD:1310990" /translation="MPPGVDCPMEFWTKEESQSVAVDFLLPTGVYLNFPVSRNANLST IKQVLWHRAQYEPFFHMLSDPEAYVFTCVNQTAEQQELEDEQRRLCDIQPFLPVLRLV AREGDRVKKLINSQISLLIGKGLHEFDSLRDPEVNDFRTKMRQFCEEAAAHRQQLGWV EWLQYSFPLQLEPSARGWRAGLLHVSNRPLLVNVKFEGSEESFTFQVSTKDMPLALMA CALRKKATVFRQPLVERPEEYALQVNGRHEYLYGSYPLCHFQYICSCLHSGLTPHLTM VHSSSILAMRDEQSNPAPQVQKPRVKPPPIPAKKPSSVSLWSLEQPFCIELIEGRKVN ADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISICDLPRMARLCF ALYAVVEKAKKARSTKKKSKKADCPIAWANLMLFDYKDQLKTGERCLYMWPSVPDEKG ELMNPAGTVRGNPNTESAAALVIYLPEVAPHPVYFPALEKILELGRHGERGRITEEEQ LQLREILERRGSGELYEHEKDLVWKMRHEVQEHFPEALARLLLVTKWNKHEDVAQMLY LLCSWPELPVLSALELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKYESY LDCELTKFLLGRALANRKIGHFLFWHLRSEMHVPSVALRFGLIMEAYCRGSTHHMKVL MKQGEALSKLKALNDFVKASSQKTTKPQTKEMMHMCMRQETYMEALSHLQSPLDPSTL LEEVCVEQCTFMDSKMKPLWIMYSSEKAGGAGSVGIIFKNGDDLRQDMLTLQMIQLMD FLWKQEGLDLRMTPYGCLPTGDRTGLIEVVLHSDTIANIQLNKSNMAATAAFNKDALL NWLKSKNPGEALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHIDFGH FLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCERAYTILRRHGL LFLHLFALMRAAGLPELSCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTK VNWLAHNVSKDNRQ" polyA_site 4847 /gene="Pik3cd" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcgccccgcc tctagctcac tcgctccttg cctcggggct gccagctccg cgggcgcagc 61 cgctggaccg gagaacaggc ctcagagaag taacacagca ggatgccccc tggggtagac 121 tgccccatgg agttctggac caaagaggag agccagagcg tggccgttga cttcttgctg 181 cccacaggag tctacttgaa cttccctgtg tcccgcaatg ccaacctcag caccatcaag 241 caggtgctgt ggcatcgtgc acagtatgag ccgttcttcc acatgctcag tgaccccgag 301 gcttatgtgt tcacctgtgt gaaccagaca gcggagcagc aggagttgga ggatgagcag 361 cggaggctgt gtgacatcca gcccttcctg cccgtgctgc gcctggtggc ccgagagggg 421 gaccgcgtga agaagctcat caactcacag atcagcctcc tcatcggcaa aggtctccat 481 gagtttgatt ccctgcggga cccggaagta aacgacttcc gcactaagat gcgccagttt 541 tgcgaagagg ccgcggctca ccgccagcag ctgggctggg tggaatggct gcagtatagc 601 ttccccctgc agctggagcc ctcagccaga ggttggcggg ctggcttatt gcatgtcagc 661 aaccgacccc tgctggtcaa tgtgaagttc gagggcagtg aggagagctt caccttccag 721 gtatccacca aggacatgcc cctcgcactg atggcctgtg ccctccgaaa aaaggccacc 781 gtgttccggc agcctctggt ggagaggcct gaggagtatg ccctgcaggt gaacgggagg 841 cacgagtacc tctacggcag ctaccccctc tgccactttc agtacatctg tagctgcctg 901 cacagcggac tgactcccca tctgaccatg gtccactcct cctccatcct cgccatgagg 961 gatgagcaga gcaaccctgc cccccaggtg cagaagccac gagtcaaacc tcccccgatc 1021 cctgccaaga agccctcctc tgtgtccctg tggtccctgg aacagccatt ctgcattgag 1081 ctgattgagg gccgcaaggt gaatgcggat gaaaggatga agctggttgt gcaggccggg 1141 ctcttccacg gcaatgagat gctgtgcaag actgtgtcga gctcagaggt gaatgtgtgc 1201 tcagagcccg tgtggaagca gcgactagaa ttcgacatca gcatctgtga cctcccccga 1261 atggcccggc tctgctttgc actctatgct gtcgtggaga aggctaagaa ggcgcgctcc 1321 acaaagaaga agtccaagaa ggcggactgt cccatcgctt gggccaacct catgctattc 1381 gactacaaag atcagctcaa gacgggcgaa cggtgcctct acatgtggcc ctctgtccca 1441 gatgagaaag gggaactgat gaatcctgcg ggtacagtac gtggtaaccc caacacagag 1501 agtgccgctg ccctggtcat ctacctacct gaggtggctc cccaccctgt gtacttccct 1561 gctctggaga agatcctgga gctggggcgt cacggggagc gtgggcgcat cacagaggag 1621 gagcagctgc agctgcggga gatcctggag cggcggggat ctggggaact gtacgaacat 1681 gagaaggacc tggtgtggaa gatgcgtcac gaagtccagg agcatttccc agaggcgctg 1741 gcccgcctgc tactggtcac caagtggaat aaacatgagg atgtggccca gatgctctat 1801 ttgctgtgct cctggcccga gcttcctgtg ctgagcgccc tggagcttct ggactttagt 1861 tttcctgact gctacgtggg ttccttcgcc atcaagtccc tacggaagct gacggatgac 1921 gagcttttcc agtaccttct gcagctggta caagtactca aatatgagtc ctacctggac 1981 tgcgagttga ccaaattctt gttgggccga gccctggcta accgcaagat cgggcacttc 2041 ctgttctggc acctccgctc tgagatgcat gtaccgtccg tggccctgcg ttttggcctc 2101 atcatggaag cctactgcag aggcagcacc caccacatga aggtgctgat gaagcagggg 2161 gaggcactga gcaagcttaa ggccctgaat gactttgtga aggcgagctc gcagaagacc 2221 accaagcccc agaccaagga gatgatgcat atgtgtatgc gccaggagac ttacatggag 2281 gcgctgtccc acctgcagtc tcccctcgac cccagcaccc tgctggagga agtctgtgtg 2341 gagcagtgca ccttcatgga ctccaaaatg aagccattgt ggatcatgta cagcagcgag 2401 aaggcaggcg gtgccggcag cgtgggcatc atctttaaga acggggatga cctccgccag 2461 gacatgctga ctctgcagat gatccagctc atggacttcc tatggaagca ggagggcctg 2521 gacctgagga tgacccccta tggctgcctc cccaccggag atcgcacagg cctcattgag 2581 gtggtcctcc actcggacac catcgccaac atccagctga ataaaagcaa catggcagcc 2641 acggctgcgt tcaacaagga cgctctgctc aactggctca agtctaagaa ccctggggag 2701 gctctggatc gggccattga ggaattcacc ctctcctgtg ctggctactg tgtggccaca 2761 tatgtgctgg gcatcggtga ccggcacagc gataacatca tgatcagaga gagtgggcag 2821 cttttccaca ttgactttgg ccactttctg gggaacttca agaccaagtt cgggatcaac 2881 cgggagcgtg tccccttcat tctcacctac gactttgtcc acgtgatcca gcaggggaag 2941 actaacaaca gtgagaaatt tgaaaggttc cgaggctact gtgaacgagc ctacaccatc 3001 ctgcggcgtc acgggctgct tttccttcat ctcttcgccc tcatgcgcgc agcaggtctg 3061 cctgagctta gctgctccaa agacatccag tatctcaagg actctctggc actagggaag 3121 acggaggaag aagcactaaa gcacttccgg gtgaagttca atgaagctct ccgggagagc 3181 tggaaaacca aagtcaactg gctggcacac aatgtgtcca aggataacag gcagtaagag 3241 gcgcccccct gggcgtcaca ttcccctggg cgtcacatgg cagttccctg gttccctccg 3301 ggctctcagc catagaggta aactgtcagt cctggagacc aggcatgctc agtggtcatc 3361 aaaggggccc cagacctgaa ctgtccctca cagagaagaa ccacacaact gcttcttgtt 3421 tacactggtt atttatttat gactcgaaat gtttaaggaa cagaatagcc ataaatggaa 3481 gtgcattttt gtgcagggga ggggtgctgt cctcgtgacc ccccctccct cagcactgta 3541 aacagcacct tgaggatcgt acccctagtc ttccaacctg tgggtcttgg ccccccaaag 3601 gcagttttgg gggccacctt cccaggctcc cagccggctg cctagaacaa gcctggcagt 3661 cacctggtgc ctcccacgca gacaggacac ctcaatcctc agctcagctc acctccgcca 3721 ccttcatgtg gcccaccctc ggcgacctcc atctaccaag cctccggcag ctcctgagga 3781 agccaggagc ttccctctag actcaggcac acttgctctg cactgctgaa gtgacaacct 3841 cttgggtacg gaaacaccct caccttttat ttgcgggtaa gaacatgatt atgtaaactc 3901 tgtatagaat agccggggta aaggacctgg cttccactac agatagctgt gttctgggcc 3961 tcaaaacact agagattggt gcccgattta gtgcggtgtg gtcgtgaatc cagacaaagg 4021 gcaagcctga acggagtcct cttcgcaatt tgtgtgagaa ccgcacacaa aggcagcttt 4081 ctggaaggac aggactgatg tctcccagag ctgccattct cagaaggcag ctggggtccc 4141 gggttctgaa gtgtgcgcga ggaggaggac caagtttagt agtctgggcg actggagcat 4201 ctccagaaat gcagggtctc caccccctcc caggtatcca aacctacttt gggctgtaga 4261 gccagtcacc tggcttttta gagagcccag ctcagtggtg cacatgcata aaacgtgcca 4321 tcccgagccc accgtgatgc atcagctgcc gcctcaggac ctggctctcc cggtaacatc 4381 ctgagacttg cagaaccatc accgccgtct tgctggcagc ccagaacatg gctgctcaag 4441 gaagccaggt gtccgctctt tcacgatgat gaactgaggg tccagcagtg gttggtgcct 4501 ccagggcact tgctgaaccc ttagtctgcc ccaactctga aataggaagt gtgcgtgcgt 4561 gtgcgtgcgt gtgcgcgtgt gtgccgtgtt atttattgaa aagagtctag gtgctccctg 4621 gtgtggctgc agattctgca gaggctcagc ctttctgggt tgggtatgtg gtctgtgtac 4681 ctggctggaa aagtattttc tatttttttt ttttaaaagt tgttctacgt ttctgtaggg 4741 gggaaggtag atttcctctc actgatgtgg gctgagatca gtctgtgcaa ccctgacacg 4801 tccggtaaag acaggtgaaa agaaataaaa atctttttat gttctta //
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