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PREDICTED: Rattus norvegicus phosphatidylinositol-4,5-bisphosphate 3-kinase, catalytic subunit delta (Pik3cd), transcript variant X20, mRNA

NCBI Reference Sequence: XM_063288140.1

FASTA Graphics 

LOCUS       XM_063288140            4847 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus phosphatidylinositol-4,5-bisphosphate
            3-kinase, catalytic subunit delta (Pik3cd), transcript variant X20,
            mRNA.
ACCESSION   XM_063288140
VERSION     XM_063288140.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086023) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4847
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4847
                     /gene="Pik3cd"
                     /note="phosphatidylinositol-4,5-bisphosphate 3-kinase,
                     catalytic subunit delta; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     mRNAs, 10 ESTs, 63 long SRA reads, 5 Proteins"
                     /db_xref="GeneID:366508"
                     /db_xref="RGD:1310990"
     CDS             103..3237
                     /gene="Pik3cd"
                     /codon_start=1
                     /product="phosphatidylinositol 4,5-bisphosphate 3-kinase
                     catalytic subunit delta isoform isoform X6"
                     /protein_id="XP_063144210.1"
                     /db_xref="GeneID:366508"
                     /db_xref="RGD:1310990"
                     /translation="MPPGVDCPMEFWTKEESQSVAVDFLLPTGVYLNFPVSRNANLST
                     IKQVLWHRAQYEPFFHMLSDPEAYVFTCVNQTAEQQELEDEQRRLCDIQPFLPVLRLV
                     AREGDRVKKLINSQISLLIGKGLHEFDSLRDPEVNDFRTKMRQFCEEAAAHRQQLGWV
                     EWLQYSFPLQLEPSARGWRAGLLHVSNRPLLVNVKFEGSEESFTFQVSTKDMPLALMA
                     CALRKKATVFRQPLVERPEEYALQVNGRHEYLYGSYPLCHFQYICSCLHSGLTPHLTM
                     VHSSSILAMRDEQSNPAPQVQKPRVKPPPIPAKKPSSVSLWSLEQPFCIELIEGRKVN
                     ADERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISICDLPRMARLCF
                     ALYAVVEKAKKARSTKKKSKKADCPIAWANLMLFDYKDQLKTGERCLYMWPSVPDEKG
                     ELMNPAGTVRGNPNTESAAALVIYLPEVAPHPVYFPALEKILELGRHGERGRITEEEQ
                     LQLREILERRGSGELYEHEKDLVWKMRHEVQEHFPEALARLLLVTKWNKHEDVAQMLY
                     LLCSWPELPVLSALELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKYESY
                     LDCELTKFLLGRALANRKIGHFLFWHLRSEMHVPSVALRFGLIMEAYCRGSTHHMKVL
                     MKQGEALSKLKALNDFVKASSQKTTKPQTKEMMHMCMRQETYMEALSHLQSPLDPSTL
                     LEEVCVEQCTFMDSKMKPLWIMYSSEKAGGAGSVGIIFKNGDDLRQDMLTLQMIQLMD
                     FLWKQEGLDLRMTPYGCLPTGDRTGLIEVVLHSDTIANIQLNKSNMAATAAFNKDALL
                     NWLKSKNPGEALDRAIEEFTLSCAGYCVATYVLGIGDRHSDNIMIRESGQLFHIDFGH
                     FLGNFKTKFGINRERVPFILTYDFVHVIQQGKTNNSEKFERFRGYCERAYTILRRHGL
                     LFLHLFALMRAAGLPELSCSKDIQYLKDSLALGKTEEEALKHFRVKFNEALRESWKTK
                     VNWLAHNVSKDNRQ"
     polyA_site      4847
                     /gene="Pik3cd"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tcgccccgcc tctagctcac tcgctccttg cctcggggct gccagctccg cgggcgcagc
       61 cgctggaccg gagaacaggc ctcagagaag taacacagca ggatgccccc tggggtagac
      121 tgccccatgg agttctggac caaagaggag agccagagcg tggccgttga cttcttgctg
      181 cccacaggag tctacttgaa cttccctgtg tcccgcaatg ccaacctcag caccatcaag
      241 caggtgctgt ggcatcgtgc acagtatgag ccgttcttcc acatgctcag tgaccccgag
      301 gcttatgtgt tcacctgtgt gaaccagaca gcggagcagc aggagttgga ggatgagcag
      361 cggaggctgt gtgacatcca gcccttcctg cccgtgctgc gcctggtggc ccgagagggg
      421 gaccgcgtga agaagctcat caactcacag atcagcctcc tcatcggcaa aggtctccat
      481 gagtttgatt ccctgcggga cccggaagta aacgacttcc gcactaagat gcgccagttt
      541 tgcgaagagg ccgcggctca ccgccagcag ctgggctggg tggaatggct gcagtatagc
      601 ttccccctgc agctggagcc ctcagccaga ggttggcggg ctggcttatt gcatgtcagc
      661 aaccgacccc tgctggtcaa tgtgaagttc gagggcagtg aggagagctt caccttccag
      721 gtatccacca aggacatgcc cctcgcactg atggcctgtg ccctccgaaa aaaggccacc
      781 gtgttccggc agcctctggt ggagaggcct gaggagtatg ccctgcaggt gaacgggagg
      841 cacgagtacc tctacggcag ctaccccctc tgccactttc agtacatctg tagctgcctg
      901 cacagcggac tgactcccca tctgaccatg gtccactcct cctccatcct cgccatgagg
      961 gatgagcaga gcaaccctgc cccccaggtg cagaagccac gagtcaaacc tcccccgatc
     1021 cctgccaaga agccctcctc tgtgtccctg tggtccctgg aacagccatt ctgcattgag
     1081 ctgattgagg gccgcaaggt gaatgcggat gaaaggatga agctggttgt gcaggccggg
     1141 ctcttccacg gcaatgagat gctgtgcaag actgtgtcga gctcagaggt gaatgtgtgc
     1201 tcagagcccg tgtggaagca gcgactagaa ttcgacatca gcatctgtga cctcccccga
     1261 atggcccggc tctgctttgc actctatgct gtcgtggaga aggctaagaa ggcgcgctcc
     1321 acaaagaaga agtccaagaa ggcggactgt cccatcgctt gggccaacct catgctattc
     1381 gactacaaag atcagctcaa gacgggcgaa cggtgcctct acatgtggcc ctctgtccca
     1441 gatgagaaag gggaactgat gaatcctgcg ggtacagtac gtggtaaccc caacacagag
     1501 agtgccgctg ccctggtcat ctacctacct gaggtggctc cccaccctgt gtacttccct
     1561 gctctggaga agatcctgga gctggggcgt cacggggagc gtgggcgcat cacagaggag
     1621 gagcagctgc agctgcggga gatcctggag cggcggggat ctggggaact gtacgaacat
     1681 gagaaggacc tggtgtggaa gatgcgtcac gaagtccagg agcatttccc agaggcgctg
     1741 gcccgcctgc tactggtcac caagtggaat aaacatgagg atgtggccca gatgctctat
     1801 ttgctgtgct cctggcccga gcttcctgtg ctgagcgccc tggagcttct ggactttagt
     1861 tttcctgact gctacgtggg ttccttcgcc atcaagtccc tacggaagct gacggatgac
     1921 gagcttttcc agtaccttct gcagctggta caagtactca aatatgagtc ctacctggac
     1981 tgcgagttga ccaaattctt gttgggccga gccctggcta accgcaagat cgggcacttc
     2041 ctgttctggc acctccgctc tgagatgcat gtaccgtccg tggccctgcg ttttggcctc
     2101 atcatggaag cctactgcag aggcagcacc caccacatga aggtgctgat gaagcagggg
     2161 gaggcactga gcaagcttaa ggccctgaat gactttgtga aggcgagctc gcagaagacc
     2221 accaagcccc agaccaagga gatgatgcat atgtgtatgc gccaggagac ttacatggag
     2281 gcgctgtccc acctgcagtc tcccctcgac cccagcaccc tgctggagga agtctgtgtg
     2341 gagcagtgca ccttcatgga ctccaaaatg aagccattgt ggatcatgta cagcagcgag
     2401 aaggcaggcg gtgccggcag cgtgggcatc atctttaaga acggggatga cctccgccag
     2461 gacatgctga ctctgcagat gatccagctc atggacttcc tatggaagca ggagggcctg
     2521 gacctgagga tgacccccta tggctgcctc cccaccggag atcgcacagg cctcattgag
     2581 gtggtcctcc actcggacac catcgccaac atccagctga ataaaagcaa catggcagcc
     2641 acggctgcgt tcaacaagga cgctctgctc aactggctca agtctaagaa ccctggggag
     2701 gctctggatc gggccattga ggaattcacc ctctcctgtg ctggctactg tgtggccaca
     2761 tatgtgctgg gcatcggtga ccggcacagc gataacatca tgatcagaga gagtgggcag
     2821 cttttccaca ttgactttgg ccactttctg gggaacttca agaccaagtt cgggatcaac
     2881 cgggagcgtg tccccttcat tctcacctac gactttgtcc acgtgatcca gcaggggaag
     2941 actaacaaca gtgagaaatt tgaaaggttc cgaggctact gtgaacgagc ctacaccatc
     3001 ctgcggcgtc acgggctgct tttccttcat ctcttcgccc tcatgcgcgc agcaggtctg
     3061 cctgagctta gctgctccaa agacatccag tatctcaagg actctctggc actagggaag
     3121 acggaggaag aagcactaaa gcacttccgg gtgaagttca atgaagctct ccgggagagc
     3181 tggaaaacca aagtcaactg gctggcacac aatgtgtcca aggataacag gcagtaagag
     3241 gcgcccccct gggcgtcaca ttcccctggg cgtcacatgg cagttccctg gttccctccg
     3301 ggctctcagc catagaggta aactgtcagt cctggagacc aggcatgctc agtggtcatc
     3361 aaaggggccc cagacctgaa ctgtccctca cagagaagaa ccacacaact gcttcttgtt
     3421 tacactggtt atttatttat gactcgaaat gtttaaggaa cagaatagcc ataaatggaa
     3481 gtgcattttt gtgcagggga ggggtgctgt cctcgtgacc ccccctccct cagcactgta
     3541 aacagcacct tgaggatcgt acccctagtc ttccaacctg tgggtcttgg ccccccaaag
     3601 gcagttttgg gggccacctt cccaggctcc cagccggctg cctagaacaa gcctggcagt
     3661 cacctggtgc ctcccacgca gacaggacac ctcaatcctc agctcagctc acctccgcca
     3721 ccttcatgtg gcccaccctc ggcgacctcc atctaccaag cctccggcag ctcctgagga
     3781 agccaggagc ttccctctag actcaggcac acttgctctg cactgctgaa gtgacaacct
     3841 cttgggtacg gaaacaccct caccttttat ttgcgggtaa gaacatgatt atgtaaactc
     3901 tgtatagaat agccggggta aaggacctgg cttccactac agatagctgt gttctgggcc
     3961 tcaaaacact agagattggt gcccgattta gtgcggtgtg gtcgtgaatc cagacaaagg
     4021 gcaagcctga acggagtcct cttcgcaatt tgtgtgagaa ccgcacacaa aggcagcttt
     4081 ctggaaggac aggactgatg tctcccagag ctgccattct cagaaggcag ctggggtccc
     4141 gggttctgaa gtgtgcgcga ggaggaggac caagtttagt agtctgggcg actggagcat
     4201 ctccagaaat gcagggtctc caccccctcc caggtatcca aacctacttt gggctgtaga
     4261 gccagtcacc tggcttttta gagagcccag ctcagtggtg cacatgcata aaacgtgcca
     4321 tcccgagccc accgtgatgc atcagctgcc gcctcaggac ctggctctcc cggtaacatc
     4381 ctgagacttg cagaaccatc accgccgtct tgctggcagc ccagaacatg gctgctcaag
     4441 gaagccaggt gtccgctctt tcacgatgat gaactgaggg tccagcagtg gttggtgcct
     4501 ccagggcact tgctgaaccc ttagtctgcc ccaactctga aataggaagt gtgcgtgcgt
     4561 gtgcgtgcgt gtgcgcgtgt gtgccgtgtt atttattgaa aagagtctag gtgctccctg
     4621 gtgtggctgc agattctgca gaggctcagc ctttctgggt tgggtatgtg gtctgtgtac
     4681 ctggctggaa aagtattttc tatttttttt ttttaaaagt tgttctacgt ttctgtaggg
     4741 gggaaggtag atttcctctc actgatgtgg gctgagatca gtctgtgcaa ccctgacacg
     4801 tccggtaaag acaggtgaaa agaaataaaa atctttttat gttctta
//
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Reference sequence information

  • RefSeq alternative splicing
    See 23 reference mRNA sequence splice variants for the Pik3cd gene.
  • RefSeq protein product
    See the reference protein sequence for phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform isoform X6 (XP_063144210.1).

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