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PREDICTED: Rattus norvegicus zinc finger protein 384 (Zfp384), transcript variant X14, mRNA

NCBI Reference Sequence: XM_063285454.1

FASTA Graphics 

LOCUS       XM_063285454            2796 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus zinc finger protein 384 (Zfp384),
            transcript variant X14, mRNA.
ACCESSION   XM_063285454
VERSION     XM_063285454.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086022) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2796
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2796
                     /gene="Zfp384"
                     /gene_synonym="Ciz; Nmp4; Znf384"
                     /note="zinc finger protein 384; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 14
                     ESTs, 109 long SRA reads, 4 Proteins"
                     /db_xref="GeneID:171018"
                     /db_xref="RGD:708346"
     CDS             325..1887
                     /gene="Zfp384"
                     /gene_synonym="Ciz; Nmp4; Znf384"
                     /codon_start=1
                     /product="zinc finger protein 384 isoform X7"
                     /protein_id="XP_063141524.1"
                     /db_xref="GeneID:171018"
                     /db_xref="RGD:708346"
                     /translation="MEESHFNSNPYFWPSIPTVSGQIENTMFINKMKDQLLPEKGCGL
                     APPHYPTLLTVPASVSLSSGISMDTESKSEQLTPHSQASVTQNITVVPVPSTGLMTAG
                     VSCSQRWRREGSQSRGPGLVITSPSGSLVTTASSAQTFPISTPMIVSALPPGSQALQV
                     VPDLSKKVASTLTEEGGGGGGGGGTVAPPKPPRGRKKKRMLESGLPEMNDPYVLAPGD
                     DDDHQKDGKTYRCRMCSLTFYSKSEMQIHSKSHTETKPHKCPHCSKTFANSSYLAQHI
                     RIHSGAKPYSCNFCEKSFRQLSHLQQHTRIHTGDRPYKCAHPGCEKAFTQLSNLQSHR
                     RQHNKDKPFKCHNCHRAYTDAASLEAHLSTHTVKHAKVYTCTICSRAYTSETYLMKHM
                     RKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQASQASQQ
                     QQQQQPPPPQPPHFQSPGAAPQGGGGGDSNQNPPPQCSFDLTPYKPAEHHKDICLTVT
                     TSTIQVEHLASS"
     polyA_site      2796
                     /gene="Zfp384"
                     /gene_synonym="Ciz; Nmp4; Znf384"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 acttccgggt gagtgttcag gagggcgggg ggcctatacg ctgcctcgcg cccccgccct
       61 gcgggtgtgt agcgcgtagc ccgtgcgagt gtaggggtct gtctcgcgcc tgcagtgcat
      121 gcccgcgcgc ccggcctcgc gtcccctgtc ccgcgccctg cgagccctcc cactccctcg
      181 gctccttcct ttcccagtga acgccgcccc tcccgcgcgc tggctctggc gctggcgccg
      241 gcgccgtcgc cgccgcctga aagttcagga gccctggaaa ggagaaggaa taagacgaca
      301 ggaggaagag agagagaggg gagaatggaa gagtctcact tcaattctaa cccgtacttc
      361 tggccttcta tccccacggt ctcagggcag attgaaaaca ctatgttcat caacaagatg
      421 aaggatcagc tgttgccaga gaagggctgt ggactggcac cacctcacta tcccactttg
      481 ctgacagtgc ctgcctcagt gtccctgtcc tctggcatca gcatggacac agagtccaag
      541 tcagaacagc tgaccccaca cagtcaggca tctgttaccc agaacatcac agtggtccct
      601 gtaccatcta caggactcat gactgcggga gtctcctgtt ctcagaggtg gagaagagaa
      661 gggagtcaat caaggggtcc tggtttggta atcacatccc cttcaggctc tcttgtgacc
      721 acagcctcat cagctcagac tttccctatc tcgactccca tgattgtctc agctcttccc
      781 cctggctcac aagccctaca ggtggtccct gacctctcca agaaggtagc atcaacccta
      841 actgaggaag gaggcggagg tggtggtgga ggtggcactg tggctcctcc taaacctcct
      901 cggggccgca agaagaagcg gatgctggaa tcagggcttc ctgagatgaa tgacccttac
      961 gtccttgccc ctggggatga cgatgaccat cagaaagatg gcaagaccta caggtgccgg
     1021 atgtgctcac tgaccttcta ctcaaagtcg gagatgcaga tccactccaa gtcacacacc
     1081 gagaccaagc cccacaagtg cccacactgc tccaagacct tcgccaacag ctcctacctg
     1141 gcccagcaca tccgtatcca ttcaggggcc aagccctata gttgtaactt ttgtgagaaa
     1201 tccttccgtc agctctcaca cctgcagcag cacacccgaa tccacactgg cgatagacca
     1261 tacaaatgtg cacacccggg ctgcgagaag gctttcacac aactctccaa cctgcagtct
     1321 cacagacggc agcacaacaa agataaaccc ttcaagtgcc acaactgtca ccgagcatac
     1381 acagacgcag cctcactaga ggctcattta tctacacaca cagtgaagca cgccaaggtt
     1441 tatacctgca caatctgtag tcgggcatat acatcagaaa catatcttat gaaacatatg
     1501 cgcaaacaca accctcctga tctccaacaa caagtgcaag cggcggcagc ggcagcggca
     1561 gtggcccagg ctcaggccca ggctcaggct caggcccagg cccaggctca ggcccaggcc
     1621 caggcccagg ctcaggctca ggcccaggcc caagcttcac aggcatcaca gcagcagcaa
     1681 cagcagcagc caccacctcc acaaccacca cacttccagt ctcctggggc agctccccag
     1741 ggagggggtg gtggggacag caaccagaac cctccacccc agtgttcctt tgacctgacc
     1801 ccctataagc cggcagagca tcataaagac atctgcctca ctgtcaccac cagcaccatc
     1861 caggtggaac acctggccag ctcttagaga tccgtactgc catccattgg aaaggggaga
     1921 agtcctggtc cctcctttgt caactcttct tggtgggaaa gttctcttct tccttgacaa
     1981 gtcctgtctc cagctccttg ggtctcaggc atggcttttc ttcgcaagat aaccatcctt
     2041 aatctcagct gctcctgatt ggccaaggaa tcctgagctg atagtgttat ccaacagccc
     2101 ccatccaagc agagctttta aaactggggc ttggtgcttg agagaaggat ccgctgtaac
     2161 ctcacatctt gtccagtgtg tgggcgatta cctttctctc catcctcaaa gttggggctg
     2221 atagaagact agtggctggc cctcccagat aacagagaag gaagctctaa atgtcgccag
     2281 ccttccgttc tatgcttacc tgtaaaagaa cagattttgc acgtggcctg atccctgtga
     2341 gccattttct tccccttaca tggtctcact tcatattggg tggtgactat acctttttta
     2401 tttgtaaggg gggcaatagc tgatacatgg tcaccaaggt gccagagatt ccccaggtga
     2461 ccaacggtgg cttaagagtg tgagttacca tttttcctta caacctcctt ccttctctgc
     2521 caaccaaggg cctatatact cagtctcact accccagtcc aaggagctct gggagctgtg
     2581 taagctgtgt tctctgcgat gccatctggg ctttgcagag aagggagaat tcagggcaca
     2641 cacaggactg gacttagcct ccctaggtgc cacggtcaga tgccggacat ggatttatat
     2701 ataaatatat atatataaat atatatatat acctgctcat cacggccatc tttgttgtaa
     2761 ccatttctgt gtttataaat gcattatctc tgagaa
//
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