U.S. flag

An official website of the United States government

PREDICTED: Rattus norvegicus transmembrane protein 161B (Tmem161b), transcript variant X2, mRNA

NCBI Reference Sequence: XM_063282660.1

FASTA Graphics 

LOCUS       XM_063282660            4384 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus transmembrane protein 161B (Tmem161b),
            transcript variant X2, mRNA.
ACCESSION   XM_063282660
VERSION     XM_063282660.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086020) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4384
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4384
                     /gene="Tmem161b"
                     /note="transmembrane protein 161B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     ESTs, 188 long SRA reads"
                     /db_xref="GeneID:309953"
                     /db_xref="RGD:1309660"
     CDS             1942..3405
                     /gene="Tmem161b"
                     /codon_start=1
                     /product="transmembrane protein 161B isoform X2"
                     /protein_id="XP_063138730.1"
                     /db_xref="GeneID:309953"
                     /db_xref="RGD:1309660"
                     /translation="MGVIGIQLVVTMVMASVMQKIIPHYSLARWLLCNGSLRWYQHPS
                     EEELRILAGKQQKGKSKKDRKYNGHIENKPLTIPKDIDLHLETKSVTEVDTLALHYFP
                     EYQWLVDFTVAATVVYLVTEVYYSFMKPTQEMNISLVWCLLVLSFAIKVLFSLTTHYF
                     KVEDGGERSVCVTFGFFFFVKAMAVLIVTENYLEFGLETGFTNFSDTAMQFLEKQGLE
                     SQGPVSKLTFKFFLAVFCSLIGAFLTFPGLRLAQMHLDALNLATEKITQTLLHINFLA
                     PLFMVLLWVKPITKDYIMNPPLGKESVPLMTEATFDTLRLWLIVLLCVLRLAMMRSHL
                     QAYLNLAQKCVDQMKKEAGRISTVELQKMATRVFYYLCVIALQYVAPLVMLLHMTLLL
                     KTLGNHSWGIYPEAVSPLPVDNNLPSNLVYPELPSPDGKMKVTVMQITVALSSLKNIF
                     TPLLFRGLLSFLTWWIAACLFSTSLFGLFYHQYLTVA"
     polyA_site      4384
                     /gene="Tmem161b"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tctgagaatc cttgtcttta tagtagacca agtatttcac tactgtgtta taaatgctac
       61 cccacaatgg atattttgga cttactgatg tttaattggt tatacgttta ttcttccctc
      121 tcatgctctg atctggtatg tagtcccaaa cttcagagat gggccttgta tatcaggttc
      181 ctgtattgtg agcagtgaca ataggcttgt gatacaacca aaattactga gctctctaaa
      241 ttatttgctt tcagtttgtg aaaatatttg gtagaaaatg tactgcaggt atactaattg
      301 ttccacttaa tcttgtgatg gaaatcttgc attcatgttg atttatgaga gaacagtagc
      361 acaattagag cagcattttt gagctacagg tccctggtgg cttgtttagt caatgtagca
      421 gtttaataat ttgctgctgt aaattgtggg gagacggaaa gcgttgctat agtcagagtt
      481 ggtgagaagt agagcaggga agagtaatgt ggtatgtgta tgagagaaac acagtacatt
      541 tagagtacag agcaatgaat tgatggtaaa gtggggagtc attgagtagc tgactactac
      601 taattttcat tcaaatgcaa aaaaactagt ggagagtcat tgagtagtga atgtgggatc
      661 cttgacttta agaatggctg ggtatggtgg tacatgcctt aaattccagc atgggatctg
      721 tgagcccaag gccagcccgg tatatagtga attctgtgtt attcagaaaa aaaattacct
      781 atgatttttg gttaaatttt aaaaaatgta tatttggatc ccattattga gtaataaaat
      841 ttcagaatct ttgcttgttt gtttgttttg caaaacaggt tcttaacata gtagctcagt
      901 ctatctttga actccctcct ttcctgcttc agcctccgaa ctgctaggat attgtatgaa
      961 ctgtcactcc caagtcagaa tttaattctt aataaattct gtagttaagt ctgaaataag
     1021 tggtcttcct agaggaaaat ggaaggctaa gaaccttggg tgtatttatt agaagttctt
     1081 ttgcatttga atgaaaatca gtcattttga agattttaag gaggttttaa cattgaatgt
     1141 gtagtagcag agatctgagt ttcttctgaa gttgtctgat gtccctttcc tgagattctt
     1201 tgctcttttt gaagaggcct agtcaatcta tgttaacttg gtgtttctcc agttagtatt
     1261 tcgttagttc agcgtgtctc tgaccacctt tgcagaaaca gacgtttgta aactgccttc
     1321 tacttttttg cttgtttgat tctattttca ttgttaatga catggtatgg atttgctcag
     1381 agtcctggtc caaggtagaa ggactcatct ggcgatggct ttgctgacag tggaccattt
     1441 taacaaatca caagaggtgg ggtgtatgtg tgtgaatgca tgagtccttc ctttttgtga
     1501 tttaactata ggaactttac tatgatcatc ttgtggaatt ttatcacatc ccagtggcac
     1561 taccctgaaa aatgagttag gtgaagtttc tattttcctg atttaatgga agttcaaccc
     1621 tagtgtgaat ttcagagagg acaaaccata gtttgccatc ttaactgctc tggaattata
     1681 tgaaacaaac aaacaaagca actttcaagt ccttgtgaag tgaatattct ggtggtttgg
     1741 ctgaaatggc catacccttt gctttaccag acaactgttt tccaaaagcc ctcttatctc
     1801 aggatacttg ttcagtcact cattcactgt ttgtcaacgt tggcaggcca aggatataac
     1861 tacttacaaa acagacacct atgcttcgtg gagcttttct tttcattagg agaggctgac
     1921 tagtgggaca gtcttctagc catgggtgtg ataggtatac agctggttgt taccatggtg
     1981 atggccagtg tcatgcagaa gattatacct cactattctc ttgctcgatg gctactctgt
     2041 aatggcagct tgagatggta tcaacaccct tccgaagaag aattaagaat ccttgcaggg
     2101 aagcagcaga aaggaaaaag taaaaaagac agaaaataca atggccatat tgaaaataag
     2161 ccactaacca ttccaaaaga tattgacctt catctagaaa ccaagtccgt tacagaagtg
     2221 gatactttag cactgcatta ctttccagaa taccagtggc tggtggactt cacggtggct
     2281 gctactgttg tgtatttagt aactgaagtc tattacagct ttatgaagcc cacacaggaa
     2341 atgaatatca gcttagtctg gtgcctcctg gttttgtctt ttgcaatcaa agttctattt
     2401 tcattaacta cacactattt taaagtagaa gatggaggtg agaggtcagt ttgtgtcacc
     2461 tttggatttt ttttcttcgt taaagcaatg gcagttttga tcgtaacaga gaactacctg
     2521 gagtttggac ttgaaacagg gtttacaaat ttttcagaca ctgcgatgca gtttcttgaa
     2581 aagcaaggtt tagaatctca gggtcctgtt tcaaaactta ctttcaaatt tttcctggct
     2641 gttttctgtt cactcattgg ggcttttttg acatttcctg gattacggct ggctcaaatg
     2701 catctggatg ccctgaattt ggcaacagaa aaaattacac aaacattact tcatatcaac
     2761 ttcttggcac ctttatttat ggttctgctc tgggtgaaac caatcaccaa agactacatc
     2821 atgaacccac cattgggtaa agagagtgtc cctttaatga cagaagccac attcgatact
     2881 cttcgactct ggttaatagt tctgctatgt gttttgcggt tggccatgat gcgaagtcac
     2941 ttgcaagcgt atttaaactt ggcccagaaa tgtgtggatc aaatgaagaa agaagcaggc
     3001 cgaataagta cagtggagct acagaaaatg gcaacgcgag tcttttatta cctgtgtgtc
     3061 attgccctgc aatatgtggc acctctggtg atgctgcttc acatgactct gcttctgaaa
     3121 acactaggta atcattcctg ggggatttat ccagaagctg tttctccctt gccagtggat
     3181 aataatctcc catccaactt ggtttaccct gaactaccat cacctgatgg gaagatgaag
     3241 gtaactgtta tgcaaatcac agtggcgttg agcagcttaa aaaacatctt cacgcctctc
     3301 ctttttcgag gacttctgtc atttttgaca tggtggattg ctgcttgcct cttttctaca
     3361 agcctttttg ggcttttcta tcatcagtat ctgacagtgg catgaatttc agtcaaaaat
     3421 ggatatccaa gtcacacttt aaattcaaat atctgtgccc ttgaaggttg acaaaagaag
     3481 aatgcaaata caacggagaa aaacgtatcg gagtgtcttg ttttgaatgc ttcctctgtg
     3541 ctctcagggt gaattcatgt tgtaatattt aaaaatcaca agataggttg ttacactgtt
     3601 acactgtggc attggaattg taactcatcg ggataaccaa tgtgagaggg ctatctgcag
     3661 aggcaatcct gcggattacc ttggtttaca gttgcaaacc tacaacagtc ttttaggctt
     3721 ctcctaggac tccagtaact gactgctttc cgtggtgttg tggtactgtt attactcgta
     3781 tttgctgcct gtagaacaat cttcaaactg agccatgctc gagggaaggg aaaggaacta
     3841 caattacttc tgttggtaat gtattagtct tcaaaaaaaa tccaacagaa aggaagagaa
     3901 agctactgta tattacagta agaaaagttg catagtcatt ttaaattgaa tggagatata
     3961 aatcgcctaa tgtctacaag cactgttact tgagagtagc aggaatattg ttttaaagtg
     4021 tgtgccaccc agcttgaaag ttcttttgaa atgattggcc aaacgaacat tagcagtctc
     4081 actgttagtt ttgggcctcc tgtattttac tttttctttg attctaaata gttatgttta
     4141 atctaaaaat atttatcaat actgatcaaa tttgagaatt actttgtaat cctgctaagt
     4201 gtatgtattg tatatatatt atatattaaa tatataatat attgaggtta taaaagatga
     4261 aaatattgaa tccttataat attttaagtt acagaatgtc cgttaaacaa tgattgaatg
     4321 agatgtattt gtatctagaa atttctgttt ggaatgagat taaaatacat ttttaaaagc
     4381 tcaa
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.