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NCBI Reference Sequence: XM_063282660.1
FASTA Graphics
LOCUS XM_063282660 4384 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus transmembrane protein 161B (Tmem161b), transcript variant X2, mRNA. ACCESSION XM_063282660 VERSION XM_063282660.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086020) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4384 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="2" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..4384 /gene="Tmem161b" /note="transmembrane protein 161B; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 ESTs, 188 long SRA reads" /db_xref="GeneID:309953" /db_xref="RGD:1309660" CDS 1942..3405 /gene="Tmem161b" /codon_start=1 /product="transmembrane protein 161B isoform X2" /protein_id="XP_063138730.1" /db_xref="GeneID:309953" /db_xref="RGD:1309660" /translation="MGVIGIQLVVTMVMASVMQKIIPHYSLARWLLCNGSLRWYQHPS EEELRILAGKQQKGKSKKDRKYNGHIENKPLTIPKDIDLHLETKSVTEVDTLALHYFP EYQWLVDFTVAATVVYLVTEVYYSFMKPTQEMNISLVWCLLVLSFAIKVLFSLTTHYF KVEDGGERSVCVTFGFFFFVKAMAVLIVTENYLEFGLETGFTNFSDTAMQFLEKQGLE SQGPVSKLTFKFFLAVFCSLIGAFLTFPGLRLAQMHLDALNLATEKITQTLLHINFLA PLFMVLLWVKPITKDYIMNPPLGKESVPLMTEATFDTLRLWLIVLLCVLRLAMMRSHL QAYLNLAQKCVDQMKKEAGRISTVELQKMATRVFYYLCVIALQYVAPLVMLLHMTLLL KTLGNHSWGIYPEAVSPLPVDNNLPSNLVYPELPSPDGKMKVTVMQITVALSSLKNIF TPLLFRGLLSFLTWWIAACLFSTSLFGLFYHQYLTVA" polyA_site 4384 /gene="Tmem161b" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tctgagaatc cttgtcttta tagtagacca agtatttcac tactgtgtta taaatgctac 61 cccacaatgg atattttgga cttactgatg tttaattggt tatacgttta ttcttccctc 121 tcatgctctg atctggtatg tagtcccaaa cttcagagat gggccttgta tatcaggttc 181 ctgtattgtg agcagtgaca ataggcttgt gatacaacca aaattactga gctctctaaa 241 ttatttgctt tcagtttgtg aaaatatttg gtagaaaatg tactgcaggt atactaattg 301 ttccacttaa tcttgtgatg gaaatcttgc attcatgttg atttatgaga gaacagtagc 361 acaattagag cagcattttt gagctacagg tccctggtgg cttgtttagt caatgtagca 421 gtttaataat ttgctgctgt aaattgtggg gagacggaaa gcgttgctat agtcagagtt 481 ggtgagaagt agagcaggga agagtaatgt ggtatgtgta tgagagaaac acagtacatt 541 tagagtacag agcaatgaat tgatggtaaa gtggggagtc attgagtagc tgactactac 601 taattttcat tcaaatgcaa aaaaactagt ggagagtcat tgagtagtga atgtgggatc 661 cttgacttta agaatggctg ggtatggtgg tacatgcctt aaattccagc atgggatctg 721 tgagcccaag gccagcccgg tatatagtga attctgtgtt attcagaaaa aaaattacct 781 atgatttttg gttaaatttt aaaaaatgta tatttggatc ccattattga gtaataaaat 841 ttcagaatct ttgcttgttt gtttgttttg caaaacaggt tcttaacata gtagctcagt 901 ctatctttga actccctcct ttcctgcttc agcctccgaa ctgctaggat attgtatgaa 961 ctgtcactcc caagtcagaa tttaattctt aataaattct gtagttaagt ctgaaataag 1021 tggtcttcct agaggaaaat ggaaggctaa gaaccttggg tgtatttatt agaagttctt 1081 ttgcatttga atgaaaatca gtcattttga agattttaag gaggttttaa cattgaatgt 1141 gtagtagcag agatctgagt ttcttctgaa gttgtctgat gtccctttcc tgagattctt 1201 tgctcttttt gaagaggcct agtcaatcta tgttaacttg gtgtttctcc agttagtatt 1261 tcgttagttc agcgtgtctc tgaccacctt tgcagaaaca gacgtttgta aactgccttc 1321 tacttttttg cttgtttgat tctattttca ttgttaatga catggtatgg atttgctcag 1381 agtcctggtc caaggtagaa ggactcatct ggcgatggct ttgctgacag tggaccattt 1441 taacaaatca caagaggtgg ggtgtatgtg tgtgaatgca tgagtccttc ctttttgtga 1501 tttaactata ggaactttac tatgatcatc ttgtggaatt ttatcacatc ccagtggcac 1561 taccctgaaa aatgagttag gtgaagtttc tattttcctg atttaatgga agttcaaccc 1621 tagtgtgaat ttcagagagg acaaaccata gtttgccatc ttaactgctc tggaattata 1681 tgaaacaaac aaacaaagca actttcaagt ccttgtgaag tgaatattct ggtggtttgg 1741 ctgaaatggc catacccttt gctttaccag acaactgttt tccaaaagcc ctcttatctc 1801 aggatacttg ttcagtcact cattcactgt ttgtcaacgt tggcaggcca aggatataac 1861 tacttacaaa acagacacct atgcttcgtg gagcttttct tttcattagg agaggctgac 1921 tagtgggaca gtcttctagc catgggtgtg ataggtatac agctggttgt taccatggtg 1981 atggccagtg tcatgcagaa gattatacct cactattctc ttgctcgatg gctactctgt 2041 aatggcagct tgagatggta tcaacaccct tccgaagaag aattaagaat ccttgcaggg 2101 aagcagcaga aaggaaaaag taaaaaagac agaaaataca atggccatat tgaaaataag 2161 ccactaacca ttccaaaaga tattgacctt catctagaaa ccaagtccgt tacagaagtg 2221 gatactttag cactgcatta ctttccagaa taccagtggc tggtggactt cacggtggct 2281 gctactgttg tgtatttagt aactgaagtc tattacagct ttatgaagcc cacacaggaa 2341 atgaatatca gcttagtctg gtgcctcctg gttttgtctt ttgcaatcaa agttctattt 2401 tcattaacta cacactattt taaagtagaa gatggaggtg agaggtcagt ttgtgtcacc 2461 tttggatttt ttttcttcgt taaagcaatg gcagttttga tcgtaacaga gaactacctg 2521 gagtttggac ttgaaacagg gtttacaaat ttttcagaca ctgcgatgca gtttcttgaa 2581 aagcaaggtt tagaatctca gggtcctgtt tcaaaactta ctttcaaatt tttcctggct 2641 gttttctgtt cactcattgg ggcttttttg acatttcctg gattacggct ggctcaaatg 2701 catctggatg ccctgaattt ggcaacagaa aaaattacac aaacattact tcatatcaac 2761 ttcttggcac ctttatttat ggttctgctc tgggtgaaac caatcaccaa agactacatc 2821 atgaacccac cattgggtaa agagagtgtc cctttaatga cagaagccac attcgatact 2881 cttcgactct ggttaatagt tctgctatgt gttttgcggt tggccatgat gcgaagtcac 2941 ttgcaagcgt atttaaactt ggcccagaaa tgtgtggatc aaatgaagaa agaagcaggc 3001 cgaataagta cagtggagct acagaaaatg gcaacgcgag tcttttatta cctgtgtgtc 3061 attgccctgc aatatgtggc acctctggtg atgctgcttc acatgactct gcttctgaaa 3121 acactaggta atcattcctg ggggatttat ccagaagctg tttctccctt gccagtggat 3181 aataatctcc catccaactt ggtttaccct gaactaccat cacctgatgg gaagatgaag 3241 gtaactgtta tgcaaatcac agtggcgttg agcagcttaa aaaacatctt cacgcctctc 3301 ctttttcgag gacttctgtc atttttgaca tggtggattg ctgcttgcct cttttctaca 3361 agcctttttg ggcttttcta tcatcagtat ctgacagtgg catgaatttc agtcaaaaat 3421 ggatatccaa gtcacacttt aaattcaaat atctgtgccc ttgaaggttg acaaaagaag 3481 aatgcaaata caacggagaa aaacgtatcg gagtgtcttg ttttgaatgc ttcctctgtg 3541 ctctcagggt gaattcatgt tgtaatattt aaaaatcaca agataggttg ttacactgtt 3601 acactgtggc attggaattg taactcatcg ggataaccaa tgtgagaggg ctatctgcag 3661 aggcaatcct gcggattacc ttggtttaca gttgcaaacc tacaacagtc ttttaggctt 3721 ctcctaggac tccagtaact gactgctttc cgtggtgttg tggtactgtt attactcgta 3781 tttgctgcct gtagaacaat cttcaaactg agccatgctc gagggaaggg aaaggaacta 3841 caattacttc tgttggtaat gtattagtct tcaaaaaaaa tccaacagaa aggaagagaa 3901 agctactgta tattacagta agaaaagttg catagtcatt ttaaattgaa tggagatata 3961 aatcgcctaa tgtctacaag cactgttact tgagagtagc aggaatattg ttttaaagtg 4021 tgtgccaccc agcttgaaag ttcttttgaa atgattggcc aaacgaacat tagcagtctc 4081 actgttagtt ttgggcctcc tgtattttac tttttctttg attctaaata gttatgttta 4141 atctaaaaat atttatcaat actgatcaaa tttgagaatt actttgtaat cctgctaagt 4201 gtatgtattg tatatatatt atatattaaa tatataatat attgaggtta taaaagatga 4261 aaatattgaa tccttataat attttaagtt acagaatgtc cgttaaacaa tgattgaatg 4321 agatgtattt gtatctagaa atttctgttt ggaatgagat taaaatacat ttttaaaagc 4381 tcaa //
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