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PREDICTED: Rattus norvegicus poly(rC) binding protein 3 (Pcbp3), transcript variant X10, mRNA

NCBI Reference Sequence: XM_063279059.1

FASTA Graphics 

LOCUS       XM_063279059            2261 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus poly(rC) binding protein 3 (Pcbp3),
            transcript variant X10, mRNA.
ACCESSION   XM_063279059
VERSION     XM_063279059.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086038) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2261
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2261
                     /gene="Pcbp3"
                     /note="poly(rC) binding protein 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 80 long SRA reads, 13 Proteins"
                     /db_xref="GeneID:294336"
                     /db_xref="RGD:1307430"
     CDS             519..1631
                     /gene="Pcbp3"
                     /codon_start=1
                     /product="poly(rC)-binding protein 3 isoform X6"
                     /protein_id="XP_063135129.1"
                     /db_xref="GeneID:294336"
                     /db_xref="RGD:1307430"
                     /translation="MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNV
                     TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK
                     AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG
                     AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTP
                     VIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEA
                     QNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEG
                     SSERQITITGTPANISLAQYLINARLTSEVTGMGAL"
     polyA_site      2261
                     /gene="Pcbp3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gcgcgggagt ggctggctgt gcggaggggg cgggtcctcg ccgcgcgcag tgctcgggcc
       61 agagctcgag gcgctgctta ccgtcgcctg agctaggaga cgccgtggcc gccgctgggt
      121 cgcctcgggc ttcgcgtcgc gccgtgtctg cctcctctgc cccacccgat cggcagcaca
      181 ggctctacct agtccgcggc ctccctgtcc gcggcggggc aggtggtttt gctgaggtga
      241 actcctgccc tgccttctgg tagctgctgc ctcctgaccc tgagctctcg gcgaacctgg
      301 gaaggggatg agaataggat ggacagtctc tcctcgggga gcaggtgggc tggcaggaca
      361 ggcgtcccca ggccgggaga aggaggcgct cccaggtagg tgagctccag ccaagccagc
      421 cctgccagag acctccagtt ttggtggatg gtgctctgag ccacagtgca cttgagcgtt
      481 tggatctatg gacctgcttt gaaccataga gcctgcctat gggggaaggt gacgccatct
      541 gggccccatc catccttcct cacagtaccc tcagcacctt aagccaccac cctgagctac
      601 attttggagg gaagatggaa tctaaggtct cggaaggtgg cctgaacgta accctgacca
      661 tccgcctcct gatgcatgga aaggaagttg gaagcatcat cgggaagaaa ggagaaacag
      721 taaagaagat gcgtgaagag agtggcgcca ggatcaacat ctcagaggga aactgcccag
      781 agagaatcgt caccatcaca ggcccaacgg acgccatctt caaggccttt gctatgattg
      841 catacaagtt tgaggaggac atcattaatt ccatgagcaa cagccctgcc accagcaagc
      901 cccccgtgac actgcgacta gtggtccctg ccagccagtg tgggtccctg atcggcaaag
      961 gtggctccaa gatcaaggag atccgggagt ccacaggtgc tcaggtccag gtggcaggtg
     1021 acatgctgcc caactccacg gagcgggcgg tgactatctc agggaccccg gacgccatca
     1081 tccagtgtgt gaaacagatc tgtgtggtca tgctggagtc cccaccgaaa ggtgccacca
     1141 ttccctaccg cccaaagccc gcctccaccc ctgtcatttt tgcaggtggt caggcctaca
     1201 caatccaggg acagtacgcc atcccccacc cagatttgac caagctccac cagttggcca
     1261 tgcagcaaac cccctttcct cccctcggac agaccaaccc cgctttcccc ggagaaaagc
     1321 tgcctttaca ctcctccgaa gaagctcaaa atctgatggg ccagtcgtca ggtctggatg
     1381 ccagcccacc ggccagcact catgaactca ccattcccaa tgatcttata ggctgcataa
     1441 ttggacgcca aggcaccaaa atcaatgaaa tccgacagat gtctggagct cagatcaaaa
     1501 tcgccaacgc cactgaaggg tcatcagagc gccagattac catcacaggg accccagcca
     1561 acatcagcct cgcccagtat ctcatcaacg ctaggctgac gtctgaggtc actgggatgg
     1621 gtgcgctcta acctccccga gatcctccac tgcacacatc ggatggctcc agcccgcagc
     1681 ctcaccagct gacacactgt acagactgcc tgtccttcct tgcagatatg actagagcgt
     1741 tttctttaca gacaggtgat agtgcgtgtc tgcccactca ggccctgtgc gctccgtgtt
     1801 agtgtagcct ccacgcattg gcatgcagct ctttacttta atgctcaacg tattcccaaa
     1861 tgtgatgttt cagagatgta ttcctcagta tccatgtgac tacctgttta aaagttggtt
     1921 tgatgcttta acagcacttc ccatgtcctg ctgccccttg ttctcagaga ccctcctctc
     1981 ccacccggtc tactgactca ttgccaccct agattgtcca cagggatcag aggtactttt
     2041 cttgtaacct gcagggagtg tctggaagag gagggacttg gggagtatct aaggagcagg
     2101 gtggagtgcc agagggtggg gtgggaccct ggcttcactg ggatatctcg gggagggggc
     2161 gcttggggcc cccaggtgtc ttccaaaatg gctaagaaca aggacttgcc agaaagttca
     2221 tctgcaccca tcagagttta ataaatgtcg tgttcctctc c
//
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