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NCBI Reference Sequence: XM_063279059.1
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LOCUS XM_063279059 2261 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus poly(rC) binding protein 3 (Pcbp3), transcript variant X10, mRNA. ACCESSION XM_063279059 VERSION XM_063279059.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086038) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2261 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="20" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..2261 /gene="Pcbp3" /note="poly(rC) binding protein 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 ESTs, 80 long SRA reads, 13 Proteins" /db_xref="GeneID:294336" /db_xref="RGD:1307430" CDS 519..1631 /gene="Pcbp3" /codon_start=1 /product="poly(rC)-binding protein 3 isoform X6" /protein_id="XP_063135129.1" /db_xref="GeneID:294336" /db_xref="RGD:1307430" /translation="MGEGDAIWAPSILPHSTLSTLSHHPELHFGGKMESKVSEGGLNV TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGNCPERIVTITGPTDAIFK AFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTG AQVQVAGDMLPNSTERAVTISGTPDAIIQCVKQICVVMLESPPKGATIPYRPKPASTP VIFAGGQAYTIQGQYAIPHPDLTKLHQLAMQQTPFPPLGQTNPAFPGEKLPLHSSEEA QNLMGQSSGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEG SSERQITITGTPANISLAQYLINARLTSEVTGMGAL" polyA_site 2261 /gene="Pcbp3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcgcgggagt ggctggctgt gcggaggggg cgggtcctcg ccgcgcgcag tgctcgggcc 61 agagctcgag gcgctgctta ccgtcgcctg agctaggaga cgccgtggcc gccgctgggt 121 cgcctcgggc ttcgcgtcgc gccgtgtctg cctcctctgc cccacccgat cggcagcaca 181 ggctctacct agtccgcggc ctccctgtcc gcggcggggc aggtggtttt gctgaggtga 241 actcctgccc tgccttctgg tagctgctgc ctcctgaccc tgagctctcg gcgaacctgg 301 gaaggggatg agaataggat ggacagtctc tcctcgggga gcaggtgggc tggcaggaca 361 ggcgtcccca ggccgggaga aggaggcgct cccaggtagg tgagctccag ccaagccagc 421 cctgccagag acctccagtt ttggtggatg gtgctctgag ccacagtgca cttgagcgtt 481 tggatctatg gacctgcttt gaaccataga gcctgcctat gggggaaggt gacgccatct 541 gggccccatc catccttcct cacagtaccc tcagcacctt aagccaccac cctgagctac 601 attttggagg gaagatggaa tctaaggtct cggaaggtgg cctgaacgta accctgacca 661 tccgcctcct gatgcatgga aaggaagttg gaagcatcat cgggaagaaa ggagaaacag 721 taaagaagat gcgtgaagag agtggcgcca ggatcaacat ctcagaggga aactgcccag 781 agagaatcgt caccatcaca ggcccaacgg acgccatctt caaggccttt gctatgattg 841 catacaagtt tgaggaggac atcattaatt ccatgagcaa cagccctgcc accagcaagc 901 cccccgtgac actgcgacta gtggtccctg ccagccagtg tgggtccctg atcggcaaag 961 gtggctccaa gatcaaggag atccgggagt ccacaggtgc tcaggtccag gtggcaggtg 1021 acatgctgcc caactccacg gagcgggcgg tgactatctc agggaccccg gacgccatca 1081 tccagtgtgt gaaacagatc tgtgtggtca tgctggagtc cccaccgaaa ggtgccacca 1141 ttccctaccg cccaaagccc gcctccaccc ctgtcatttt tgcaggtggt caggcctaca 1201 caatccaggg acagtacgcc atcccccacc cagatttgac caagctccac cagttggcca 1261 tgcagcaaac cccctttcct cccctcggac agaccaaccc cgctttcccc ggagaaaagc 1321 tgcctttaca ctcctccgaa gaagctcaaa atctgatggg ccagtcgtca ggtctggatg 1381 ccagcccacc ggccagcact catgaactca ccattcccaa tgatcttata ggctgcataa 1441 ttggacgcca aggcaccaaa atcaatgaaa tccgacagat gtctggagct cagatcaaaa 1501 tcgccaacgc cactgaaggg tcatcagagc gccagattac catcacaggg accccagcca 1561 acatcagcct cgcccagtat ctcatcaacg ctaggctgac gtctgaggtc actgggatgg 1621 gtgcgctcta acctccccga gatcctccac tgcacacatc ggatggctcc agcccgcagc 1681 ctcaccagct gacacactgt acagactgcc tgtccttcct tgcagatatg actagagcgt 1741 tttctttaca gacaggtgat agtgcgtgtc tgcccactca ggccctgtgc gctccgtgtt 1801 agtgtagcct ccacgcattg gcatgcagct ctttacttta atgctcaacg tattcccaaa 1861 tgtgatgttt cagagatgta ttcctcagta tccatgtgac tacctgttta aaagttggtt 1921 tgatgcttta acagcacttc ccatgtcctg ctgccccttg ttctcagaga ccctcctctc 1981 ccacccggtc tactgactca ttgccaccct agattgtcca cagggatcag aggtactttt 2041 cttgtaacct gcagggagtg tctggaagag gagggacttg gggagtatct aaggagcagg 2101 gtggagtgcc agagggtggg gtgggaccct ggcttcactg ggatatctcg gggagggggc 2161 gcttggggcc cccaggtgtc ttccaaaatg gctaagaaca aggacttgcc agaaagttca 2221 tctgcaccca tcagagttta ataaatgtcg tgttcctctc c //
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