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NCBI Reference Sequence: XM_063266944.1
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LOCUS XM_063266944 2776 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus origin recognition complex, subunit 2 (Orc2), transcript variant X6, mRNA. ACCESSION XM_063266944 VERSION XM_063266944.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086027) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2776 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="9" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..2776 /gene="Orc2" /gene_synonym="Orc2l" /note="origin recognition complex, subunit 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 ESTs, 77 long SRA reads" /db_xref="GeneID:301430" /db_xref="RGD:1311844" CDS 379..2019 /gene="Orc2" /gene_synonym="Orc2l" /codon_start=1 /product="origin recognition complex subunit 2 isoform X2" /protein_id="XP_063123014.1" /db_xref="GeneID:301430" /db_xref="RGD:1311844" /translation="MSTLRLKEAKVPSVQFVGDDDVLSHILDREGGTKLKKEKVQLLV NPQKVIKKAECELEKSDLEVLEDQNYVEVLGRNIQESLGNGSAVDGRNKVYSFQHRKH PEEMTKLALELAKTSGKIDPLASNDPKITKNIARKSKASRSHCDSESEYSASSSEDDE EVAKDDEEDTNVVRCSKKSQGQNRLLPAPVSKEILPKKRKRDKAGDLVEEYFEAHSSS KVLTSDRTLQKLRRARVDQKTLRNLLSKFVPSFSTEIGQLNQQHERLFDKWILQLRLG FNIVLYGLGSKRDLLEKFRTTMLQDSIHVVINGFFPGISVKSILNSITEDVLSHMGTF QSVLDQRDWIMNRFKEDSSLELFLLIHNLDSQMLRGDNSQQILGQLSSLRNVYLIASI DHLNAPLMWDHAKQSLYNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLIHVLR SLTPNARGIFRLLMKYQLDNQDCPSYIGLSFQDFYQQCREAFLVNSDLTLRAQLTEFR DHKLIRTKKGTDGVEYLLIPVDSGTLADFLEKEEEEES" polyA_site 2776 /gene="Orc2" /gene_synonym="Orc2l" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtggtggtgg gcgggggatc tgttttccga ctgagctaag tccttttggc ccgagtcaac 61 gggcttgggg cgccgtcgct cttggcgact cggctcccca ttggtctctt agggcaccgc 121 ccacgggcgg gcgagggatt cggtgtgctg cgcgcagttc cattaccctg ctggggctcc 181 gaggttcggc ttgtgccagt cgatattttc ctggacgccg gcctccccag gccgttctgg 241 ggtttcccgc gccggctgga gtcctggctg gccgcgcgtg tgagcctcgc ggccgttctt 301 ccttccgccg gctctgactc aagaggtgac tggatggtca agccgcagaa tgcctagcac 361 cttacaaggt tggccacaat gagcacactg cggttaaagg aagccaaggt gccaagcgtt 421 cagtttgtgg gagatgacga tgttcttagt cacattctgg atagagaagg aggaactaaa 481 ttaaagaagg agaaagttca gcttttggtc aatccccaga aagtaataaa gaaggcagaa 541 tgtgaattag agaaaagtga cctggaagtc ttagaggatc agaactacgt ggaagtcttg 601 ggaagaaata ttcaagaatc cttgggaaat ggctctgctg tagatggtag gaataaagtt 661 tattcttttc aacacagaaa acaccctgaa gagatgacta aattggcttt agaactggca 721 aaaacatcag gaaaaattga tccacttgcc tcaaacgatc ctaaaatcac gaaaaacatt 781 gctcgaaaaa gcaaagcatc aaggtctcat tgtgacagtg aaagtgaata ttctgcttcc 841 agctcagaag atgatgaaga ggttgcaaaa gacgatgaag aagacactaa tgtggtcagg 901 tgctcgaaaa agagtcaagg tcagaataga ctacttccag ctcctgtttc caaagagata 961 ctgcccaaga aaaggaagag agacaaagca ggtgacttgg tagaagaata ttttgaagcc 1021 cacagtagtt caaaagtctt aacgtctgat agaacgctgc agaagctgag gagagcgaga 1081 gtggaccaga aaactctgcg taacttactg agcaaatttg tgccttcctt ttctactgaa 1141 attggacagt tgaatcaaca gcatgagaga ttgtttgata agtggatact acagttacgc 1201 cttgggttca acattgtgct ttatggtttg gggtctaaga gagatttact agaaaagttt 1261 cgaactacca tgcttcaaga ttccattcat gttgtcatca acggcttctt tcctggcatc 1321 agtgtaaaat caatcctgaa ctctataact gaagatgtcc tcagtcacat gggtactttc 1381 caaagtgttc tggatcagcg agactggata atgaacagat ttaaagaaga ttcttcttta 1441 gaactctttc ttcttatcca caatttggat agccagatgt taagaggaga caatagccag 1501 caaattcttg gacagttgtc atccttacgt aatgtgtatc tcatagcatc tatcgaccac 1561 ctcaatgctc ctctcatgtg ggatcatgca aagcagagtc tgtacaattg gctgtggtat 1621 gaaaccacta catacagtcc ttacaccgaa gaaacctcct atgagaactc ccttttggtt 1681 aaacagtctg gatctctacc actgagttct ctgattcatg tcttacgaag ccttacaccc 1741 aatgcaaggg ggattttcag gctacttatg aagtaccaac tggataacca ggactgccct 1801 tcctacattg gactttcttt tcaagatttt taccagcagt gtcgggaagc attccttgtt 1861 aacagtgatc tcacactccg agcccagtta actgaattta gggaccacaa acttataaga 1921 acgaagaagg gaactgatgg tgtggagtat ttattaattc ctgttgacag cggaacattg 1981 gccgatttct tggagaagga ggaggaggag gagtcgtaga ctgtctctta cccttgaacc 2041 ttatgtggaa gcctcggtgt gccccagctg ctgctcctct agtaagaatg ctggtttaca 2101 tccaacatta ggtcattctc tccagcatac aagatgtcct gtggaagagg catatcatca 2161 atttgaactt tgattagcct ggctggtgta cagtctcgaa tactatgcag tggttgttga 2221 gttgggaaaa aaaaatgtgc ctttaattta ttacctctcg ggagacgtct tgctggttga 2281 acagtgctca gggatcattt ggaactggtt gttttggatt attttatact ggatgctatc 2341 cctgtttttg agggcaacac tccagagctg aattgctaca agtgcacttg cttcagatcg 2401 tcagagcaca gaggtcagag tgcagggatc tcgcagaact gataaggaag gaggtgttcc 2461 ttctgttctt gctgaagcga tgatgaaaag catcggtgga ctaggatgac ccagctttct 2521 cctgtggact tgggctacac ctcctgaaga ccgttgacac tattcagctg agtttatggg 2581 agaagtgtaa gggatatatg tgtgtgtaga gcatgtgtcc gatctagaaa gcatatttaa 2641 aatagttggt gtctgtacca ggaccttgat ttttatgaaa caaatgagaa gccaggctaa 2701 gaaataaaat cctagcttac attttctcaa ttgttttcag gacaataaag aataaaaaca 2761 tttcatcatc cttgta //
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