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PREDICTED: Rattus norvegicus origin recognition complex, subunit 2 (Orc2), transcript variant X6, mRNA

NCBI Reference Sequence: XM_063266944.1

FASTA Graphics 

LOCUS       XM_063266944            2776 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus origin recognition complex, subunit 2
            (Orc2), transcript variant X6, mRNA.
ACCESSION   XM_063266944
VERSION     XM_063266944.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086027) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2776
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2776
                     /gene="Orc2"
                     /gene_synonym="Orc2l"
                     /note="origin recognition complex, subunit 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 17 ESTs, 77 long SRA reads"
                     /db_xref="GeneID:301430"
                     /db_xref="RGD:1311844"
     CDS             379..2019
                     /gene="Orc2"
                     /gene_synonym="Orc2l"
                     /codon_start=1
                     /product="origin recognition complex subunit 2 isoform X2"
                     /protein_id="XP_063123014.1"
                     /db_xref="GeneID:301430"
                     /db_xref="RGD:1311844"
                     /translation="MSTLRLKEAKVPSVQFVGDDDVLSHILDREGGTKLKKEKVQLLV
                     NPQKVIKKAECELEKSDLEVLEDQNYVEVLGRNIQESLGNGSAVDGRNKVYSFQHRKH
                     PEEMTKLALELAKTSGKIDPLASNDPKITKNIARKSKASRSHCDSESEYSASSSEDDE
                     EVAKDDEEDTNVVRCSKKSQGQNRLLPAPVSKEILPKKRKRDKAGDLVEEYFEAHSSS
                     KVLTSDRTLQKLRRARVDQKTLRNLLSKFVPSFSTEIGQLNQQHERLFDKWILQLRLG
                     FNIVLYGLGSKRDLLEKFRTTMLQDSIHVVINGFFPGISVKSILNSITEDVLSHMGTF
                     QSVLDQRDWIMNRFKEDSSLELFLLIHNLDSQMLRGDNSQQILGQLSSLRNVYLIASI
                     DHLNAPLMWDHAKQSLYNWLWYETTTYSPYTEETSYENSLLVKQSGSLPLSSLIHVLR
                     SLTPNARGIFRLLMKYQLDNQDCPSYIGLSFQDFYQQCREAFLVNSDLTLRAQLTEFR
                     DHKLIRTKKGTDGVEYLLIPVDSGTLADFLEKEEEEES"
     polyA_site      2776
                     /gene="Orc2"
                     /gene_synonym="Orc2l"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gtggtggtgg gcgggggatc tgttttccga ctgagctaag tccttttggc ccgagtcaac
       61 gggcttgggg cgccgtcgct cttggcgact cggctcccca ttggtctctt agggcaccgc
      121 ccacgggcgg gcgagggatt cggtgtgctg cgcgcagttc cattaccctg ctggggctcc
      181 gaggttcggc ttgtgccagt cgatattttc ctggacgccg gcctccccag gccgttctgg
      241 ggtttcccgc gccggctgga gtcctggctg gccgcgcgtg tgagcctcgc ggccgttctt
      301 ccttccgccg gctctgactc aagaggtgac tggatggtca agccgcagaa tgcctagcac
      361 cttacaaggt tggccacaat gagcacactg cggttaaagg aagccaaggt gccaagcgtt
      421 cagtttgtgg gagatgacga tgttcttagt cacattctgg atagagaagg aggaactaaa
      481 ttaaagaagg agaaagttca gcttttggtc aatccccaga aagtaataaa gaaggcagaa
      541 tgtgaattag agaaaagtga cctggaagtc ttagaggatc agaactacgt ggaagtcttg
      601 ggaagaaata ttcaagaatc cttgggaaat ggctctgctg tagatggtag gaataaagtt
      661 tattcttttc aacacagaaa acaccctgaa gagatgacta aattggcttt agaactggca
      721 aaaacatcag gaaaaattga tccacttgcc tcaaacgatc ctaaaatcac gaaaaacatt
      781 gctcgaaaaa gcaaagcatc aaggtctcat tgtgacagtg aaagtgaata ttctgcttcc
      841 agctcagaag atgatgaaga ggttgcaaaa gacgatgaag aagacactaa tgtggtcagg
      901 tgctcgaaaa agagtcaagg tcagaataga ctacttccag ctcctgtttc caaagagata
      961 ctgcccaaga aaaggaagag agacaaagca ggtgacttgg tagaagaata ttttgaagcc
     1021 cacagtagtt caaaagtctt aacgtctgat agaacgctgc agaagctgag gagagcgaga
     1081 gtggaccaga aaactctgcg taacttactg agcaaatttg tgccttcctt ttctactgaa
     1141 attggacagt tgaatcaaca gcatgagaga ttgtttgata agtggatact acagttacgc
     1201 cttgggttca acattgtgct ttatggtttg gggtctaaga gagatttact agaaaagttt
     1261 cgaactacca tgcttcaaga ttccattcat gttgtcatca acggcttctt tcctggcatc
     1321 agtgtaaaat caatcctgaa ctctataact gaagatgtcc tcagtcacat gggtactttc
     1381 caaagtgttc tggatcagcg agactggata atgaacagat ttaaagaaga ttcttcttta
     1441 gaactctttc ttcttatcca caatttggat agccagatgt taagaggaga caatagccag
     1501 caaattcttg gacagttgtc atccttacgt aatgtgtatc tcatagcatc tatcgaccac
     1561 ctcaatgctc ctctcatgtg ggatcatgca aagcagagtc tgtacaattg gctgtggtat
     1621 gaaaccacta catacagtcc ttacaccgaa gaaacctcct atgagaactc ccttttggtt
     1681 aaacagtctg gatctctacc actgagttct ctgattcatg tcttacgaag ccttacaccc
     1741 aatgcaaggg ggattttcag gctacttatg aagtaccaac tggataacca ggactgccct
     1801 tcctacattg gactttcttt tcaagatttt taccagcagt gtcgggaagc attccttgtt
     1861 aacagtgatc tcacactccg agcccagtta actgaattta gggaccacaa acttataaga
     1921 acgaagaagg gaactgatgg tgtggagtat ttattaattc ctgttgacag cggaacattg
     1981 gccgatttct tggagaagga ggaggaggag gagtcgtaga ctgtctctta cccttgaacc
     2041 ttatgtggaa gcctcggtgt gccccagctg ctgctcctct agtaagaatg ctggtttaca
     2101 tccaacatta ggtcattctc tccagcatac aagatgtcct gtggaagagg catatcatca
     2161 atttgaactt tgattagcct ggctggtgta cagtctcgaa tactatgcag tggttgttga
     2221 gttgggaaaa aaaaatgtgc ctttaattta ttacctctcg ggagacgtct tgctggttga
     2281 acagtgctca gggatcattt ggaactggtt gttttggatt attttatact ggatgctatc
     2341 cctgtttttg agggcaacac tccagagctg aattgctaca agtgcacttg cttcagatcg
     2401 tcagagcaca gaggtcagag tgcagggatc tcgcagaact gataaggaag gaggtgttcc
     2461 ttctgttctt gctgaagcga tgatgaaaag catcggtgga ctaggatgac ccagctttct
     2521 cctgtggact tgggctacac ctcctgaaga ccgttgacac tattcagctg agtttatggg
     2581 agaagtgtaa gggatatatg tgtgtgtaga gcatgtgtcc gatctagaaa gcatatttaa
     2641 aatagttggt gtctgtacca ggaccttgat ttttatgaaa caaatgagaa gccaggctaa
     2701 gaaataaaat cctagcttac attttctcaa ttgttttcag gacaataaag aataaaaaca
     2761 tttcatcatc cttgta
//
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