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PREDICTED: Rattus norvegicus neogenin 1 (Neo1), transcript variant X6, mRNA

NCBI Reference Sequence: XM_063266211.1

FASTA Graphics 

LOCUS       XM_063266211            7077 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus neogenin 1 (Neo1), transcript variant
            X6, mRNA.
ACCESSION   XM_063266211
VERSION     XM_063266211.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086026) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7077
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..7077
                     /gene="Neo1"
                     /note="neogenin 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 54 ESTs, 221 long SRA
                     reads"
                     /db_xref="GeneID:81735"
                     /db_xref="RGD:619837"
     CDS             338..4708
                     /gene="Neo1"
                     /codon_start=1
                     /product="neogenin isoform X6"
                     /protein_id="XP_063122281.1"
                     /db_xref="GeneID:81735"
                     /db_xref="RGD:619837"
                     /translation="MAAEREAGRLLSTSSSRRCCPPRPLLLLLPLLLLLGRPASGAAA
                     AKNGSPPQSAGASVRTFTPLYFLVEPVDTLSVRGSSVILNCSAYSEPSPNIEWKKDGT
                     FLNLVSDDRRQLLPDGSLFISNVVHSKHNKPDEGFYQCVATVDNLGTIVSRTAKLAVA
                     GLPRFTSQPEPSSIYVGNSGILNCEVNADLVPFVRWEQNRQPLLLDDRIVKLPSGTLV
                     ISNATEGDEGLYRCIVESGGPPKFSDEAELKVLQESEEMLDLVFLMRPSSMIKVIGQS
                     AVLPCVASGLPAPVIRWMKNEDVLDTESSGRLALLAGGSLEISDVTEDDAGTYFCVAD
                     NGNKTIEAQAELTVQVPPEFLKQPANIYARESMDIVFECEVTGKPAPTVKWVKNGDVV
                     IPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNAQAGAQLIILEHAPATTGPLP
                     SAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGVARERVENTSQPGEMQ
                     VTIQNLMPATVYIFKVMAQNKHGSGESSAPLRVETQPEVQLPGPAPNIRAYATSPTSI
                     TVTWETPLSGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYN
                     KHGPGVSTQDVAVRTLSDVPSAAPQNLSLEVRNSKSIVIHWQPPSSATQNGQITGYKI
                     RYRKASRKSDVTETVVTGTQLSQLIEGLDRGTEYNFRVAALTVNGTGPATDWLSAETF
                     ESDLDESRVPEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKV
                     DYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTVPDPTPMMPPVGVQ
                     ASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTG
                     LKPNTLYEFSVMVTKGRRSSTWSMTAHGATFELVPTSPPKDVTVVSKEGKPRTIIVNW
                     QPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQAR
                     NSKGMGPMSEAVQFRTPKADSSDKMPNDQALGSAGKGGRLPDLGSDYKPPMSGSNSPH
                     GSPTSPLDSNMLLVIIVSIGVITIVVVVIIAVFCTRRTTSHQKKKRAACKSVNGSHKY
                     KGNCKDVKPPDLWIHHERLELKPIDKSPDPNPVMTDTPIPRNSQDITPVDNSMDSNIH
                     QRRNSYRGHESEDSMSTLAGRRGMRPKMMMPFDSQPPQPVISAHPIHSLDNPHHHFHS
                     SSLASPARSHLYHPSSPWPIGTSMSLSDRANSTESVRNTPSTDTMPASSSQTCCTDHQ
                     DPEGATSSSYLASSQEEDSGQSLPTAHVRPSHPLKSFAVPAIPPPGPPIYDPALPSTP
                     LLSQQALNHHLHSVKTASIGTLGRSRPPMPVVVPSAPEVQEATRMLEDSESSYEPDEL
                     TKEMAHLEGLMKDLNAITTA"
     polyA_site      7077
                     /gene="Neo1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ctcggtctcc gcccccctcg ctctaccgtg aggagcccga gtcggcggcg ggtggcggcg
       61 cctggaacct ggagagaccg agccaccccc cagctctcgc ccggaatgta ctgactctcc
      121 ttctctgctc tcctccccgc cccgctgcag gagggaggcg cccgcagtct ttccccctgg
      181 gcgcgcgagg gggcctcgcg ggccgggccg ggccgggctg gagccgagcc tgcggcgcag
      241 ggaccggctg aagcgcgctg agggaagggc gcgagcgctc cgcggcgctg tcgccgccgc
      301 cgccgccgcc gccgccgccg ccgctcgtgg ggtagagatg gcggcggagc gtgaagccgg
      361 gcgactcctc agcacctcct cctcccggcg ctgctgcccg ccacggccgc tgctgctgtt
      421 gctgccgctg ctgctgctgc tcgggcgccc ggcgtccggc gccgcggccg cgaagaacgg
      481 ctccccgccg cagtccgcag gagccagtgt tcgaacattc actccgcttt attttctggt
      541 ggagccagta gacacactgt cagttagagg ctcttctgtt atattgaatt gctccgcata
      601 ttctgagcct tctccaaata ttgaatggaa gaaagatggg acttttttaa acttagtgtc
      661 agatgatcgc cgccagcttc tcccagatgg atctctattc atcagcaatg tggtgcattc
      721 caaacacaat aagcctgatg aaggtttcta tcagtgtgta gccacggttg ataatcttgg
      781 aactatcgtc agcagaacag ccaagctcgc agtagcaggt cttccaagat ttaccagcca
      841 accagaacct tcctcaatct atgttggaaa cagtggaatt ctgaattgtg aagttaatgc
      901 agatttggtc ccatttgtta gatgggaaca gaacagacag ccccttcttt tggatgacag
      961 gattgtcaaa cttccaagtg gaacactggt tatcagcaat gcgactgaag gagacgaggg
     1021 actctaccgc tgcattgttg aaagtggtgg gccaccaaag tttagtgatg aagctgaatt
     1081 gaaagttctt caagaatctg aggaaatgct agacttggta tttttgatgc gaccgtcttc
     1141 tatgatcaaa gtcattggtc agagtgcagt gttgccatgt gttgcctcag gacttcctgc
     1201 tccagtcatt aggtggatga agaatgaaga cgtgcttgac acagaaagct ctggaaggtt
     1261 ggccttgcta gcaggaggca gtttggagat cagtgatgtc actgaggatg atgctgggac
     1321 ttatttctgt gtagctgata atggaaataa gacaattgaa gctcaggcag agcttaccgt
     1381 gcaagtgcct cctgagttct tgaaacaacc tgctaacata tacgctcgtg aatccatgga
     1441 tattgtattc gaatgtgaag tcactgggaa gccagctcca actgtgaagt gggtcaagaa
     1501 tggggatgta gttatcccaa gtgattactt taaaattgta aaggaacata atcttcaagt
     1561 tttgggtctg gtgaaatcag atgaagggtt ctatcaatgc attgctgaga atgatgttgg
     1621 aaatgcacaa gctggagctc agctgataat ccttgagcat gcaccagcca caacgggacc
     1681 actaccttca gctcctcgag atgtcgtggc ctccctggtc tctactcgct tcattaaatt
     1741 gacatggcgt acacctgcat cagatcctca tggagacaat ctcacctatt ctgtgttcta
     1801 caccaaggaa ggggttgcta gggagcgtgt tgagaatacc agtcagccag gagagatgca
     1861 ggtgactatt caaaacttaa tgccagcaac tgtttacatc ttcaaagtta tggctcaaaa
     1921 caagcatggt tctggagaga gctcagctcc tctacgagta gaaacacagc ctgaggttca
     1981 gctccctggc ccagcaccta atatccgagc ttatgcaaca tcacctactt ctatcactgt
     2041 cacatgggaa acaccattat ctggcaatgg ggaaattcaa aattacaaat tgtactacat
     2101 ggaaaaagga acggataaag aacaggatgt tgatgtttca agtcactcct atactattaa
     2161 tggactgaag aaatacacgg aatatagttt ccgagtggtg gcctacaata aacatggtcc
     2221 tggagtgtct acacaggatg ttgctgttcg aacattatca gatgtgccca gtgctgctcc
     2281 tcagaatctg tccttagaag tgagaaattc aaagagtata gtgatccact ggcagccccc
     2341 ttcctcagcc acacaaaatg ggcagattac tggctacaag attcggtatc gaaaggcctc
     2401 ccgaaaaagt gatgtcactg agaccgtggt aactgggaca cagctgtctc agctgattga
     2461 aggtcttgat cgggggacag aatataactt ccgagtagct gctctcacag tcaatggtac
     2521 aggtcccgca actgattggc tgtctgctga gacctttgaa agtgacctag atgaatctcg
     2581 tgttcctgaa gtgcctagct ctcttcatgt ccgtccactt gtcactagca ttgtagtgag
     2641 ctggactcct ccagagaacc agaacattgt ggttcgaggg tacgccattg gttacggcat
     2701 tggcagccct catgcccaga ccatcaaagt ggactacaaa cagcgctatt acaccatcga
     2761 aaacttggat ccaagctctc attacgtgat taccttgaaa gcatttaaca atgttggtga
     2821 aggcatccct ctttatgaga gtgctgtgac cagacctcac acagtgccag atcccactcc
     2881 catgatgcca ccagtgggag ttcaggcttc cattctgagt cacgacacca taagaattac
     2941 ctgggcagac aactccctgc ccaaacacca gaagattaca gactcccgct actacacagt
     3001 ccggtggaag accaacatcc cagcaaacac caagtacaag aatgcaaacg caacaacgtt
     3061 aagctatttg gttactggtt taaagccaaa cacactgtat gagttctctg tgatggtgac
     3121 caaaggcaga aggtcaagca cgtggagtat gacagctcat ggtgctacct ttgaattagt
     3181 tcctacttct ccacctaagg atgtgacagt tgtgagtaaa gaaggaaaac cgagaacgat
     3241 aatagtgaac tggcagcctc cctctgaagc taatggcaag attacaggtt acatcatcta
     3301 ttacagcaca gatgtgaatg cagagatcca tgactgggtg attgaacctg ttgtgggaaa
     3361 caggctgact caccagattc aagagttaac actcgacaca ccatactact tcaaaatcca
     3421 ggcccggaac tcaaagggca tggggcccat gtctgaagct gtgcagttca gaacacctaa
     3481 agcggactcc tctgataaaa tgcctaatga ccaagcctta ggatcagcag ggaaaggagg
     3541 ccgactacca gacctaggat ccgactacaa acctccaatg agtggcagca acagccccca
     3601 tgggagcccc acctctcctc tagacagcaa tatgctgctg gtcatcattg tctccatcgg
     3661 cgtcatcacc atcgtagtgg ttgtgatcat tgctgtcttt tgtacccggc gcaccacctc
     3721 tcaccagaag aagaaacgag ctgcgtgcaa atcagtgaac ggctcccata agtacaaggg
     3781 caattgcaaa gacgtgaagc ctccggacct gtggatccat catgagaggc tggagttgaa
     3841 gcctattgac aagtctccag atccaaaccc tgtcatgact gatactccaa tccctcggaa
     3901 ctctcaagat atcacaccag tcgacaattc catggatagc aatatccatc aaaggcggaa
     3961 ttcatacaga gggcatgagt cagaggacag catgtctacc ctggctggaa ggaggggaat
     4021 gagaccaaaa atgatgatgc cctttgactc tcagccacct cagcctgtga ttagtgccca
     4081 tcccatccat tccctcgata accctcacca tcatttccac tccagcagcc tcgcttctcc
     4141 agcccgcagt cacctctacc acccaagcag cccatggccc attggcacat ccatgtccct
     4201 ttcagacagg gccaattcca cagaatctgt tcgaaatacc cccagcacgg acaccatgcc
     4261 agcatcctcg tctcaaacat gctgcactga tcatcaggat cctgaaggtg ctactagctc
     4321 ttcttacttg gccagctccc aggaggaaga ctcaggccag agtcttccca cagctcatgt
     4381 tcgcccttcc cacccattga agagcttcgc cgtaccagca atcccacccc cgggacctcc
     4441 tatctatgat cctgcactgc caagcacacc attactgtcc cagcaagctc tcaaccatca
     4501 ccttcactca gtgaaaacag cctccatcgg gactttagga aggagccggc ctcctatgcc
     4561 agtggttgta ccgagtgccc ctgaggtaca ggaggccacc aggatgctgg aagactccga
     4621 gagtagctat gaaccagatg agctgaccaa agagatggcc cacctggaag gactcatgaa
     4681 ggacctaaat gccatcacaa cggcttgatg accttcacct ggacaggact ccaagtctga
     4741 gtctcgaagt cttggaactg aaccttgaaa acaaggaatt gtacagagta cgagaggaca
     4801 gcacttgaga gcaggagcca gcaaaccagc cagtgcctcc atgtggggtc ggctctgggc
     4861 acagccacct gccttctggt cagcctggat catgcttgtg tcgaggcagc ttccctctgc
     4921 ctgctgatag cctgcaggac tgggcactat gggccaagat tttgtgtcca gagaagaggc
     4981 aagaagtacg acctgccttt tactttgtgg tcagtggctg tgtctctgtg ctgcaactgc
     5041 atcactttta tggagtgtag acattggcat ttatgtacaa ttttgtgtcc tattttattt
     5101 taccttaaaa cactatcaga agccaagtga tgtcctctgc aagcagttga cacttgactg
     5161 ctgttcccag ttccttacgg aaagtcatcg acagtgaggt ggtttgacac cattggcagg
     5221 cattggcttg ttctgggttt cgtttctgtt ttttaattat gagacgttgc atcctctgcc
     5281 agctgttaat ccatcacttt gaggggagga catgttgtat tgctgtttgt aagcattttt
     5341 attatttttt tattataatt attaaaggcc tgactttctc ctctcatcac tgtgagatta
     5401 cggatatttg aatgaaatgt aacattgaaa agacttgttt gctgctttct gtcagattca
     5461 gtattggggt ggggttgggg attgggaata gtaaatggag gggcggctga ggccccgtga
     5521 atgtttctgt caatgtactt tgtaccagaa gcctgcagag aatggaagca gtatctttag
     5581 tgtcctttcc tggcatgtcc atcttgtgtc actgcatagc aactggagtt ttgctcggat
     5641 ctggttataa attcttgtac actgggtggt tttgatgatt tagctgccct ggtatcttgg
     5701 tcatttcctt tttggagtgt ccaccctgag gtccctgggg atgtttgttt aattgccaag
     5761 tagagcctca gcctgactcc agagaagctg gagagcacag gggagactcc ctttgtgttg
     5821 ctattactgg ttctctttgg aaagttaaat gctaaggcag gagcttggct tcctgttcca
     5881 aataggaatc ctgcttctct gggtgccagc cctcagccag gcatccctca tgcccacatt
     5941 gcagaagctc tcctgagcac atcaaccagg atgagaggct tccccactcg tgtctggact
     6001 taattctgta aggagcagag aacagaaata gtgaagagag ggtcgtggaa gcaggtgcct
     6061 tcatctgtcc cagcagctca gccaaatccc agttagaatg aggcagcagg aggttccagg
     6121 tgtactgagg gctcagccac acacagaaga ctgcagagtg ttaaagaggt aagctgaggt
     6181 gtgtatttgg ttgtttttta tgttaatgta taatgaaaag tataagacta accctcaggc
     6241 ttcatcttct ccaacagatc cctggaggac aggatagaaa gtaaattggg cttgggctcc
     6301 ttagccagtg agcccactca gactaccatt ggctgtccta gcctccctgt cctggaacat
     6361 gggttgtatt atcctttttt aggtcggttt tacccttttt actttcaaca agatgagctc
     6421 tttgtatgat tgtgggtgtg ggatttgaaa aatgcagtga tctaactctt gttgctcttc
     6481 aagagcacca ggcagggttc tgggacaacc agtgtgcttt gactgtccta caaaaagctg
     6541 tcagagcatt ctggcctcct ggaggctaga ttcctcagac agtgtctggc ctttgcccac
     6601 agagcatgct aggttgttta gagcattcct tcccttggac cccagcactt ctgttacctc
     6661 agggccttgg tacctggata ctgccacaga atttcgatgg ggtggggagg gatgtatttt
     6721 taaataaagt aacttaaaag ttggggaatt tttttaaatt cagaaaatgc aaagctattc
     6781 tgtcttacac catttcacaa tttgatgtgt cttatatttt cctgtaattc tggaaactaa
     6841 accattgtgt gtcttgtgtc ctagttgagc tgtgctcagc agcttccttc agggaggtgt
     6901 ggaacgaatg tgtctgctgc ctggctgagg ggcctgaagg gctgctggga ctggccctgc
     6961 acacacttgt tcggcctttt ctgtaattga tgctgtaaaa ctctatggct ttttaaaatc
     7021 aatttcatgt ttttatttag tattggaaat ccaatacact tttttaatcc aatcaaa
//
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