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NCBI Reference Sequence: XM_063266211.1
FASTA Graphics
LOCUS XM_063266211 7077 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus neogenin 1 (Neo1), transcript variant X6, mRNA. ACCESSION XM_063266211 VERSION XM_063266211.1 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086026) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7077 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="8" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..7077 /gene="Neo1" /note="neogenin 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 54 ESTs, 221 long SRA reads" /db_xref="GeneID:81735" /db_xref="RGD:619837" CDS 338..4708 /gene="Neo1" /codon_start=1 /product="neogenin isoform X6" /protein_id="XP_063122281.1" /db_xref="GeneID:81735" /db_xref="RGD:619837" /translation="MAAEREAGRLLSTSSSRRCCPPRPLLLLLPLLLLLGRPASGAAA AKNGSPPQSAGASVRTFTPLYFLVEPVDTLSVRGSSVILNCSAYSEPSPNIEWKKDGT FLNLVSDDRRQLLPDGSLFISNVVHSKHNKPDEGFYQCVATVDNLGTIVSRTAKLAVA GLPRFTSQPEPSSIYVGNSGILNCEVNADLVPFVRWEQNRQPLLLDDRIVKLPSGTLV ISNATEGDEGLYRCIVESGGPPKFSDEAELKVLQESEEMLDLVFLMRPSSMIKVIGQS AVLPCVASGLPAPVIRWMKNEDVLDTESSGRLALLAGGSLEISDVTEDDAGTYFCVAD NGNKTIEAQAELTVQVPPEFLKQPANIYARESMDIVFECEVTGKPAPTVKWVKNGDVV IPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNAQAGAQLIILEHAPATTGPLP SAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGVARERVENTSQPGEMQ VTIQNLMPATVYIFKVMAQNKHGSGESSAPLRVETQPEVQLPGPAPNIRAYATSPTSI TVTWETPLSGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYN KHGPGVSTQDVAVRTLSDVPSAAPQNLSLEVRNSKSIVIHWQPPSSATQNGQITGYKI RYRKASRKSDVTETVVTGTQLSQLIEGLDRGTEYNFRVAALTVNGTGPATDWLSAETF ESDLDESRVPEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKV DYKQRYYTIENLDPSSHYVITLKAFNNVGEGIPLYESAVTRPHTVPDPTPMMPPVGVQ ASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTG LKPNTLYEFSVMVTKGRRSSTWSMTAHGATFELVPTSPPKDVTVVSKEGKPRTIIVNW QPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQAR NSKGMGPMSEAVQFRTPKADSSDKMPNDQALGSAGKGGRLPDLGSDYKPPMSGSNSPH GSPTSPLDSNMLLVIIVSIGVITIVVVVIIAVFCTRRTTSHQKKKRAACKSVNGSHKY KGNCKDVKPPDLWIHHERLELKPIDKSPDPNPVMTDTPIPRNSQDITPVDNSMDSNIH QRRNSYRGHESEDSMSTLAGRRGMRPKMMMPFDSQPPQPVISAHPIHSLDNPHHHFHS SSLASPARSHLYHPSSPWPIGTSMSLSDRANSTESVRNTPSTDTMPASSSQTCCTDHQ DPEGATSSSYLASSQEEDSGQSLPTAHVRPSHPLKSFAVPAIPPPGPPIYDPALPSTP LLSQQALNHHLHSVKTASIGTLGRSRPPMPVVVPSAPEVQEATRMLEDSESSYEPDEL TKEMAHLEGLMKDLNAITTA" polyA_site 7077 /gene="Neo1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctcggtctcc gcccccctcg ctctaccgtg aggagcccga gtcggcggcg ggtggcggcg 61 cctggaacct ggagagaccg agccaccccc cagctctcgc ccggaatgta ctgactctcc 121 ttctctgctc tcctccccgc cccgctgcag gagggaggcg cccgcagtct ttccccctgg 181 gcgcgcgagg gggcctcgcg ggccgggccg ggccgggctg gagccgagcc tgcggcgcag 241 ggaccggctg aagcgcgctg agggaagggc gcgagcgctc cgcggcgctg tcgccgccgc 301 cgccgccgcc gccgccgccg ccgctcgtgg ggtagagatg gcggcggagc gtgaagccgg 361 gcgactcctc agcacctcct cctcccggcg ctgctgcccg ccacggccgc tgctgctgtt 421 gctgccgctg ctgctgctgc tcgggcgccc ggcgtccggc gccgcggccg cgaagaacgg 481 ctccccgccg cagtccgcag gagccagtgt tcgaacattc actccgcttt attttctggt 541 ggagccagta gacacactgt cagttagagg ctcttctgtt atattgaatt gctccgcata 601 ttctgagcct tctccaaata ttgaatggaa gaaagatggg acttttttaa acttagtgtc 661 agatgatcgc cgccagcttc tcccagatgg atctctattc atcagcaatg tggtgcattc 721 caaacacaat aagcctgatg aaggtttcta tcagtgtgta gccacggttg ataatcttgg 781 aactatcgtc agcagaacag ccaagctcgc agtagcaggt cttccaagat ttaccagcca 841 accagaacct tcctcaatct atgttggaaa cagtggaatt ctgaattgtg aagttaatgc 901 agatttggtc ccatttgtta gatgggaaca gaacagacag ccccttcttt tggatgacag 961 gattgtcaaa cttccaagtg gaacactggt tatcagcaat gcgactgaag gagacgaggg 1021 actctaccgc tgcattgttg aaagtggtgg gccaccaaag tttagtgatg aagctgaatt 1081 gaaagttctt caagaatctg aggaaatgct agacttggta tttttgatgc gaccgtcttc 1141 tatgatcaaa gtcattggtc agagtgcagt gttgccatgt gttgcctcag gacttcctgc 1201 tccagtcatt aggtggatga agaatgaaga cgtgcttgac acagaaagct ctggaaggtt 1261 ggccttgcta gcaggaggca gtttggagat cagtgatgtc actgaggatg atgctgggac 1321 ttatttctgt gtagctgata atggaaataa gacaattgaa gctcaggcag agcttaccgt 1381 gcaagtgcct cctgagttct tgaaacaacc tgctaacata tacgctcgtg aatccatgga 1441 tattgtattc gaatgtgaag tcactgggaa gccagctcca actgtgaagt gggtcaagaa 1501 tggggatgta gttatcccaa gtgattactt taaaattgta aaggaacata atcttcaagt 1561 tttgggtctg gtgaaatcag atgaagggtt ctatcaatgc attgctgaga atgatgttgg 1621 aaatgcacaa gctggagctc agctgataat ccttgagcat gcaccagcca caacgggacc 1681 actaccttca gctcctcgag atgtcgtggc ctccctggtc tctactcgct tcattaaatt 1741 gacatggcgt acacctgcat cagatcctca tggagacaat ctcacctatt ctgtgttcta 1801 caccaaggaa ggggttgcta gggagcgtgt tgagaatacc agtcagccag gagagatgca 1861 ggtgactatt caaaacttaa tgccagcaac tgtttacatc ttcaaagtta tggctcaaaa 1921 caagcatggt tctggagaga gctcagctcc tctacgagta gaaacacagc ctgaggttca 1981 gctccctggc ccagcaccta atatccgagc ttatgcaaca tcacctactt ctatcactgt 2041 cacatgggaa acaccattat ctggcaatgg ggaaattcaa aattacaaat tgtactacat 2101 ggaaaaagga acggataaag aacaggatgt tgatgtttca agtcactcct atactattaa 2161 tggactgaag aaatacacgg aatatagttt ccgagtggtg gcctacaata aacatggtcc 2221 tggagtgtct acacaggatg ttgctgttcg aacattatca gatgtgccca gtgctgctcc 2281 tcagaatctg tccttagaag tgagaaattc aaagagtata gtgatccact ggcagccccc 2341 ttcctcagcc acacaaaatg ggcagattac tggctacaag attcggtatc gaaaggcctc 2401 ccgaaaaagt gatgtcactg agaccgtggt aactgggaca cagctgtctc agctgattga 2461 aggtcttgat cgggggacag aatataactt ccgagtagct gctctcacag tcaatggtac 2521 aggtcccgca actgattggc tgtctgctga gacctttgaa agtgacctag atgaatctcg 2581 tgttcctgaa gtgcctagct ctcttcatgt ccgtccactt gtcactagca ttgtagtgag 2641 ctggactcct ccagagaacc agaacattgt ggttcgaggg tacgccattg gttacggcat 2701 tggcagccct catgcccaga ccatcaaagt ggactacaaa cagcgctatt acaccatcga 2761 aaacttggat ccaagctctc attacgtgat taccttgaaa gcatttaaca atgttggtga 2821 aggcatccct ctttatgaga gtgctgtgac cagacctcac acagtgccag atcccactcc 2881 catgatgcca ccagtgggag ttcaggcttc cattctgagt cacgacacca taagaattac 2941 ctgggcagac aactccctgc ccaaacacca gaagattaca gactcccgct actacacagt 3001 ccggtggaag accaacatcc cagcaaacac caagtacaag aatgcaaacg caacaacgtt 3061 aagctatttg gttactggtt taaagccaaa cacactgtat gagttctctg tgatggtgac 3121 caaaggcaga aggtcaagca cgtggagtat gacagctcat ggtgctacct ttgaattagt 3181 tcctacttct ccacctaagg atgtgacagt tgtgagtaaa gaaggaaaac cgagaacgat 3241 aatagtgaac tggcagcctc cctctgaagc taatggcaag attacaggtt acatcatcta 3301 ttacagcaca gatgtgaatg cagagatcca tgactgggtg attgaacctg ttgtgggaaa 3361 caggctgact caccagattc aagagttaac actcgacaca ccatactact tcaaaatcca 3421 ggcccggaac tcaaagggca tggggcccat gtctgaagct gtgcagttca gaacacctaa 3481 agcggactcc tctgataaaa tgcctaatga ccaagcctta ggatcagcag ggaaaggagg 3541 ccgactacca gacctaggat ccgactacaa acctccaatg agtggcagca acagccccca 3601 tgggagcccc acctctcctc tagacagcaa tatgctgctg gtcatcattg tctccatcgg 3661 cgtcatcacc atcgtagtgg ttgtgatcat tgctgtcttt tgtacccggc gcaccacctc 3721 tcaccagaag aagaaacgag ctgcgtgcaa atcagtgaac ggctcccata agtacaaggg 3781 caattgcaaa gacgtgaagc ctccggacct gtggatccat catgagaggc tggagttgaa 3841 gcctattgac aagtctccag atccaaaccc tgtcatgact gatactccaa tccctcggaa 3901 ctctcaagat atcacaccag tcgacaattc catggatagc aatatccatc aaaggcggaa 3961 ttcatacaga gggcatgagt cagaggacag catgtctacc ctggctggaa ggaggggaat 4021 gagaccaaaa atgatgatgc cctttgactc tcagccacct cagcctgtga ttagtgccca 4081 tcccatccat tccctcgata accctcacca tcatttccac tccagcagcc tcgcttctcc 4141 agcccgcagt cacctctacc acccaagcag cccatggccc attggcacat ccatgtccct 4201 ttcagacagg gccaattcca cagaatctgt tcgaaatacc cccagcacgg acaccatgcc 4261 agcatcctcg tctcaaacat gctgcactga tcatcaggat cctgaaggtg ctactagctc 4321 ttcttacttg gccagctccc aggaggaaga ctcaggccag agtcttccca cagctcatgt 4381 tcgcccttcc cacccattga agagcttcgc cgtaccagca atcccacccc cgggacctcc 4441 tatctatgat cctgcactgc caagcacacc attactgtcc cagcaagctc tcaaccatca 4501 ccttcactca gtgaaaacag cctccatcgg gactttagga aggagccggc ctcctatgcc 4561 agtggttgta ccgagtgccc ctgaggtaca ggaggccacc aggatgctgg aagactccga 4621 gagtagctat gaaccagatg agctgaccaa agagatggcc cacctggaag gactcatgaa 4681 ggacctaaat gccatcacaa cggcttgatg accttcacct ggacaggact ccaagtctga 4741 gtctcgaagt cttggaactg aaccttgaaa acaaggaatt gtacagagta cgagaggaca 4801 gcacttgaga gcaggagcca gcaaaccagc cagtgcctcc atgtggggtc ggctctgggc 4861 acagccacct gccttctggt cagcctggat catgcttgtg tcgaggcagc ttccctctgc 4921 ctgctgatag cctgcaggac tgggcactat gggccaagat tttgtgtcca gagaagaggc 4981 aagaagtacg acctgccttt tactttgtgg tcagtggctg tgtctctgtg ctgcaactgc 5041 atcactttta tggagtgtag acattggcat ttatgtacaa ttttgtgtcc tattttattt 5101 taccttaaaa cactatcaga agccaagtga tgtcctctgc aagcagttga cacttgactg 5161 ctgttcccag ttccttacgg aaagtcatcg acagtgaggt ggtttgacac cattggcagg 5221 cattggcttg ttctgggttt cgtttctgtt ttttaattat gagacgttgc atcctctgcc 5281 agctgttaat ccatcacttt gaggggagga catgttgtat tgctgtttgt aagcattttt 5341 attatttttt tattataatt attaaaggcc tgactttctc ctctcatcac tgtgagatta 5401 cggatatttg aatgaaatgt aacattgaaa agacttgttt gctgctttct gtcagattca 5461 gtattggggt ggggttgggg attgggaata gtaaatggag gggcggctga ggccccgtga 5521 atgtttctgt caatgtactt tgtaccagaa gcctgcagag aatggaagca gtatctttag 5581 tgtcctttcc tggcatgtcc atcttgtgtc actgcatagc aactggagtt ttgctcggat 5641 ctggttataa attcttgtac actgggtggt tttgatgatt tagctgccct ggtatcttgg 5701 tcatttcctt tttggagtgt ccaccctgag gtccctgggg atgtttgttt aattgccaag 5761 tagagcctca gcctgactcc agagaagctg gagagcacag gggagactcc ctttgtgttg 5821 ctattactgg ttctctttgg aaagttaaat gctaaggcag gagcttggct tcctgttcca 5881 aataggaatc ctgcttctct gggtgccagc cctcagccag gcatccctca tgcccacatt 5941 gcagaagctc tcctgagcac atcaaccagg atgagaggct tccccactcg tgtctggact 6001 taattctgta aggagcagag aacagaaata gtgaagagag ggtcgtggaa gcaggtgcct 6061 tcatctgtcc cagcagctca gccaaatccc agttagaatg aggcagcagg aggttccagg 6121 tgtactgagg gctcagccac acacagaaga ctgcagagtg ttaaagaggt aagctgaggt 6181 gtgtatttgg ttgtttttta tgttaatgta taatgaaaag tataagacta accctcaggc 6241 ttcatcttct ccaacagatc cctggaggac aggatagaaa gtaaattggg cttgggctcc 6301 ttagccagtg agcccactca gactaccatt ggctgtccta gcctccctgt cctggaacat 6361 gggttgtatt atcctttttt aggtcggttt tacccttttt actttcaaca agatgagctc 6421 tttgtatgat tgtgggtgtg ggatttgaaa aatgcagtga tctaactctt gttgctcttc 6481 aagagcacca ggcagggttc tgggacaacc agtgtgcttt gactgtccta caaaaagctg 6541 tcagagcatt ctggcctcct ggaggctaga ttcctcagac agtgtctggc ctttgcccac 6601 agagcatgct aggttgttta gagcattcct tcccttggac cccagcactt ctgttacctc 6661 agggccttgg tacctggata ctgccacaga atttcgatgg ggtggggagg gatgtatttt 6721 taaataaagt aacttaaaag ttggggaatt tttttaaatt cagaaaatgc aaagctattc 6781 tgtcttacac catttcacaa tttgatgtgt cttatatttt cctgtaattc tggaaactaa 6841 accattgtgt gtcttgtgtc ctagttgagc tgtgctcagc agcttccttc agggaggtgt 6901 ggaacgaatg tgtctgctgc ctggctgagg ggcctgaagg gctgctggga ctggccctgc 6961 acacacttgt tcggcctttt ctgtaattga tgctgtaaaa ctctatggct ttttaaaatc 7021 aatttcatgt ttttatttag tattggaaat ccaatacact tttttaatcc aatcaaa //
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