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PREDICTED: Rattus norvegicus RAB27A, member RAS oncogene family (Rab27a), transcript variant X2, mRNA

NCBI Reference Sequence: XM_063266034.1

FASTA Graphics 

LOCUS       XM_063266034            2957 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus RAB27A, member RAS oncogene family
            (Rab27a), transcript variant X2, mRNA.
ACCESSION   XM_063266034
VERSION     XM_063266034.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086026) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2957
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..2957
                     /gene="Rab27a"
                     /gene_synonym="ram"
                     /note="RAB27A, member RAS oncogene family; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 2 ESTs, 219 long SRA reads, 18 Proteins"
                     /db_xref="GeneID:50645"
                     /db_xref="RGD:620918"
     CDS             339..1004
                     /gene="Rab27a"
                     /gene_synonym="ram"
                     /codon_start=1
                     /product="ras-related protein Rab-27A isoform X1"
                     /protein_id="XP_063122104.1"
                     /db_xref="GeneID:50645"
                     /db_xref="RGD:620918"
                     /translation="MSDGDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGI
                     DFREKRVVYRANGPDGTVGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLT
                     NEQSFLNVRNWISQLQMHAYCENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYF
                     ETSAANGTNISQAIEMLLDLIMKRMERCVDKSWIPEGVVRSNGHTSTDQLSEEKEKGL
                     CGC"
     polyA_site      2957
                     /gene="Rab27a"
                     /gene_synonym="ram"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cctttggttt ggatctaaga agcctgaccc ggggaaatca cttgactgct tggcccagcc
       61 gcatgacaag cagctgagac tcattagcca gactgtgggt ttccgtggac aggcctgtag
      121 gatagacagc tttcaaagga gtctttagag aaactttcct aagcaggctg tttggccttt
      181 accggttctc tttgttgtaa tgcgagattc agtgtgacct tggagaccga gagatgtgat
      241 tctgagttgt cagttggtgt gttggcgact ccagaccaaa ggtttaaaaa cacaactggg
      301 ctccctccta actcaggtaa agcagagagg cctccatcat gtcggatgga gattatgact
      361 acctcatcaa gtttttggcc ttgggagact ctggagtggg gaagaccagt gtactgtacc
      421 agtacactga tgggaagttc aactccaaat tcatcaccac agtgggcatt gatttcaggg
      481 aaaagagagt ggtgtacaga gcgaatggac cagatggaac tgtaggccga ggccagagaa
      541 ttcacctgca gttatgggac acggcggggc aggagaggtt tcgtagcctg accacggcat
      601 tcttcaggga cgctatgggt ttcctgcttc tgttcgacct gacaaacgag caaagtttcc
      661 tcaatgtccg aaactggata agccagctac agatgcacgc gtactgcgaa aacccagata
      721 tagtgctctg cggaaataag agtgacctag aagaccagag ggctgtgaaa gaggaggaag
      781 ccagggaact cgcagagaag tatggaatcc cctattttga aaccagcgct gccaatggga
      841 caaacataag ccaagcaatt gagatgctcc tggacctgat catgaagcgg atggagcggt
      901 gtgtggacaa atcctggatt ccagaggggg tggtgcggtc caatggccat acttctacag
      961 atcaactcag tgaggagaag gagaaggggt tatgcggctg ttgagacacc gagtgagcat
     1021 ggtggcggca gtggcggcag cagcgcctgg cccctgcctg ccaaatcctc tgtagagacc
     1081 aagccagcat cacgtgccaa gtgctgctcc ttatccccag tagaactgac tcaacatcca
     1141 attgtaactc attgcaactt catatgattt agtccatgaa ttgggggaac tatttcacag
     1201 agccaaaagt gtcttagaga aaaaaaaagc ccatggccgc gggtcattca gggatccaag
     1261 atttcagcca tggaagattg cgtgtcatgt agaatgctga tggtcccgtc gcctgcctta
     1321 acagtcaact gcctcaacac agccctagag tctcactgaa gacgttaaga tgtttgggca
     1381 atgaaaagct agcatggtct agagaatcca gagttcagaa tccataccgt agaatatcac
     1441 tctcacgtga atgctaataa gtgtgtacca tggatcaatg tctttcagca ttaccttaaa
     1501 cttagccttc cctttgacat gaacgtaaac agatggcggc catatctata ggctctgagt
     1561 agaccggatt gactcaccgt gagtttgggg gtgggtgaag tagggatcaa gtttagtcag
     1621 attgtctggc ttttagccgc ggggtcatgg agaccctcga gtttatccgt ggttcagccc
     1681 acatctgaac attgaagatg catctgctgt gtgtgcattt gtacgtatgt ctggtctggc
     1741 acttcaggct gtgctttcac ttgtctgtag actgcgaatt tgacttttcc atcaagcttt
     1801 ggtggtgttg gggtttccca gtttgttttc tcccccattt gtgtaactga aggaagctct
     1861 tgttaattat acagcttgtt tatttgctat ctggagggag atcaatgtct gtctttaagc
     1921 agtcacattt atatgctagt ttaggagagg tgttttttag cctgtaactt tcactgagaa
     1981 tttgggcact tatgtttttt gacagtataa aggaaaccac gtgctttgca tggtagtttt
     2041 cgagtggctt tttttgttgt tgttgttttt gttttgtttt tttgggggga cagggtctta
     2101 ttatgtagtt tctggccagc ctgaaagtcc ctttgtagac caggctggcc tcaaactcac
     2161 agagatccac ctgtttcagc cccctaagtg ttgggataaa aggtgtggtc atcacacctg
     2221 gctctcagaa gatttttaaa aatggaacat cgatcattta ttgccattgt cctttgaccc
     2281 cctccccaga caaaatagcc atggctacta agctttttct gtccctgaaa taagggactc
     2341 tttgaaacac caaagttgtc accgaggcct atgcatctga atcctaaaga ccggaaactt
     2401 ggggcccatc acagtcgtgc cttccaatgt tgctctaaga cttcagtgga ctgtactgca
     2461 cgtcagggca cgtttcttaa ttaatgtctc ctttgtaaat acaaacgtat tactatgcca
     2521 ggtgttggtg gcgcactcct tcaatctccc gcagttggga ggcagaggca ggcagcgagt
     2581 ttgaagccag gctggtcaat agagtttcag gacagacagt gacacagtga aattctgttt
     2641 caagaatcaa agccaatgtt tgcacagtgc aggtttctag aaggagatcc attgtcggat
     2701 tcgccttctg ttggccccgc accaggcacg gatgttaaga tatgtgatag ttgcccagcg
     2761 agagagcggc cttgaattgt tgaaatcaaa caaaactgta ttctctttga aaatgattta
     2821 aatttgatat aaaataactg tacttattgt cactgtattt ttctatttac aaatctgtat
     2881 gaaagcaaac gctcttcagt gaactttgtg ccaattaaac cataataata aataataaaa
     2941 gaggtccagt atataaa
//
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