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PREDICTED: Homo sapiens SAFB like transcription modulator (SLTM), transcript variant X19, mRNA

NCBI Reference Sequence: XM_054378812.1

FASTA Graphics 

LOCUS       XM_054378812            4080 bp    mRNA    linear   PRI 26-AUG-2024
DEFINITION  PREDICTED: Homo sapiens SAFB like transcription modulator (SLTM),
            transcript variant X19, mRNA.
ACCESSION   XM_054378812
VERSION     XM_054378812.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060939) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 6% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4080
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="15"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..4080
                     /gene="SLTM"
                     /gene_synonym="Met"
                     /note="SAFB like transcription modulator; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 5 mRNAs, 75 ESTs, 1708 long SRA reads, 5 Proteins, and
                     95% coverage of the annotated genomic feature by RNAseq
                     alignments, including 92 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:79811"
                     /db_xref="HGNC:HGNC:20709"
     CDS             711..3131
                     /gene="SLTM"
                     /gene_synonym="Met"
                     /codon_start=1
                     /product="SAFB-like transcription modulator isoform X19"
                     /protein_id="XP_054234787.1"
                     /db_xref="GeneID:79811"
                     /db_xref="HGNC:HGNC:20709"
                     /translation="MEAHTTVKEAEDDNISVTIQAEDAITLDFDGDDLLETGKNVKIT
                     DSEASKPKDGQDAIAQSPEKESKDYEMNANHKDGKKEDCVKGDPVEKEARESSKKAES
                     GDKEKDTLKKGPSSTGASGQAKSSSKESKDSKTSSKDDKGSTSSTSGSSGSSTKNIWV
                     SGLSSNTKAADLKNLFGKYGKVLSAKVVTNARSPGAKCYGIVTMSSSTEVSRCIAHLH
                     RTELHGQLISVEKVKGDPSKKEMKKENDEKSSSRSSGDKKNTSDRSSKTQASVKKEEK
                     RSSEKSEKKESKDTKKIEGKDEKNDNGASGQTSESIKKSEEKKRISSKSPGHMVILDQ
                     TKGDHCRPSRRGRYEKIHGRSKEKERASLDKKRDKDYRRKEILPFEKMKEQRLREHLV
                     RFERLRRAMELRRRREIAERERRERERIRIIREREERERLQRERERLEIERQKLERER
                     MERERLERERIRIEQERRKEAERIAREREELRRQQQQLRYEQEKRNSLKRPRDVDHRR
                     DDPYWSENKKLSLDTDARFGHGSDYSRQQNRFNDFDHRERGRFPESSAVQSSSFERRD
                     RFVGQSEGKKARPTARREDPSFERYPKNFSDSRRNEPPPPRNELRESDRREVRGERDE
                     RRTVIIHDRPDITHPRHPREAGPNPSRPTSWKSEGSMSTDKRETRVERPERSGREVSG
                     HSVRGAPPGNRSSASGYGSREGDRGVITDRGGGSQHYPEERHVVERHGRDTSGPRKEW
                     HGPPSQGPSYHDTRRMGDGRAGAGMITQHSSNASPINRIVQISGNSMPRGSGSGFKPF
                     KGGPPRRF"
ORIGIN      
        1 attgtgcgca gcgctgcgcg gcgccggcgg ccgccgaggc ctgggtggaa gttggcgctg
       61 ctgccgccgc cctgcagccc actcgctgcc tcggcagcgc gctgctcttc taagatggct
      121 gccgctaccg gtgcggtggc agcctcggcc gcctcgggtc aggcggaagg taaaaagatc
      181 accgatctgc gggtcatcga tctgaagtcc gagctgaagc ggcggaactt agacatcacc
      241 ggagtcaaga ccgtgctcat ctcccgactc aagcaggtaa aaaacatgaa gcagatgagt
      301 tgagtggaga tgcttctgtg gaagatgatg cttttatcaa ggactgtgaa ttggagaatc
      361 aagaggcaca tgagcaagat ggaaatgatg aactaaagga ctctgaagaa tttggtgaaa
      421 atgaagaaga aaatgtgcat tccaaggagt tactctctgc agaagaaaac aagagagctc
      481 atgaattaat agaggcagaa ggaatagaag atatagaaaa agaggacatc gaaagtcagg
      541 aaattgaagc tcaagaaggt gaagatgata cctttctaac agcccaagat ggtgaggaag
      601 aagaaaatga gaaagatata gcaggttctg gtgatggtac acaagaagta tctaaacctc
      661 ttccttcaga agggagccta gctgaggctg atcacacagc tcatgaagag atggaagctc
      721 atacgactgt gaaagaagct gaggatgaca acatctcggt cacaatccag gctgaagatg
      781 ccatcactct ggattttgat ggtgatgacc tcctagaaac aggtaaaaat gtgaaaatta
      841 cagattctga agcaagtaag ccaaaagatg ggcaggacgc cattgcacag agcccggaga
      901 aggaaagcaa ggattatgag atgaatgcga accataaaga tggtaagaag gaagactgcg
      961 tgaagggtga ccctgtcgag aaggaagcca gagaaagttc taagaaagca gaatctggag
     1021 acaaagaaaa ggatactttg aagaaagggc cctcgtctac tggggcctct ggtcaagcaa
     1081 agagctcttc aaaggaatct aaagacagca agacatcatc taaagatgac aaaggaagta
     1141 caagtagtac tagtggtagc agtggaagct caactaaaaa tatctgggtt agtggacttt
     1201 catctaatac caaagctgct gatttgaaga acctctttgg caaatatgga aaggttctga
     1261 gtgcaaaagt agttacaaat gctcgaagtc ctggggcaaa atgctatggc attgtaacta
     1321 tgtcttcaag cacagaggtg tccaggtgta ttgcacatct tcatcgcact gagctgcatg
     1381 gacagctgat ttctgttgaa aaagtaaaag gtgatccctc taagaaagaa atgaagaaag
     1441 aaaatgatga aaagagtagt tcaagaagtt ctggagataa aaaaaatacg agtgatagaa
     1501 gtagcaagac acaagcctct gtcaaaaaag aagagaaaag atcgtctgag aaatctgaaa
     1561 aaaaagaaag caaggatact aagaaaatag aaggtaaaga tgagaagaat gataatggag
     1621 caagtggcca aacatcagaa tcgattaaaa aaagtgaaga aaagaagcga ataagttcca
     1681 agagtccagg acatatggta atactagacc aaactaaagg agatcattgt agaccatcaa
     1741 gaagaggaag atatgagaaa attcatggaa gaagtaagga aaaggagaga gctagtctag
     1801 ataaaaaaag agataaagac tacagaagga aagagatctt gccttttgaa aagatgaagg
     1861 aacaaaggtt gagagaacat ttagttcgtt ttgaaaggct gcgacgagca atggaacttc
     1921 gaagacgaag agagattgca gagagagagc gtcgagagcg agaacgcatt agaataattc
     1981 gtgaacggga agaacgggaa cgcttacaga gagagagaga gcgcctagaa attgaaaggc
     2041 aaaaactaga gagagagaga atggaacgcg aacgcttgga aagggaacgc attcgtattg
     2101 aacaggaacg tcgtaaggaa gctgaacgga ttgctcgaga aagagaggaa ctcagaaggc
     2161 aacaacagca gcttcgttat gaacaagaaa aaaggaattc cttgaaacgc ccacgtgatg
     2221 tagatcatag gcgagatgat ccttactgga gcgagaataa aaagttgtct ctagatacag
     2281 atgcacgatt tggccatgga tccgactact ctcgccaaca gaacagattt aatgactttg
     2341 atcaccgaga gaggggcagg tttcctgaga gttcagcagt acagtcttca tcttttgaaa
     2401 ggcgggatcg ctttgttggt caaagtgagg ggaaaaaagc acgacctact gcacgaaggg
     2461 aagatccaag cttcgaaaga tatcccaaaa atttcagtga ctccagaaga aatgagcctc
     2521 caccaccaag aaatgaactt agagaatcag acaggcgaga agtacgaggg gagcgagacg
     2581 aaaggagaac ggtgattatt catgacaggc ctgatatcac tcatcctaga catcctcgag
     2641 aggcagggcc caatccttcc agacccacca gctggaaaag tgaaggaagc atgtccactg
     2701 acaaacggga aacaagagtt gaaaggccag aacgatctgg gagagaagta tcagggcaca
     2761 gtgtgagagg cgctccccct gggaatcgta gcagcgcttc ggggtacggg agcagagagg
     2821 gagacagagg agtcatcaca gaccgaggag gtggatcaca gcactatcct gaggagcgac
     2881 atgtggttga acgccatgga cgggacacaa gcggaccaag gaaagagtgg catggtccac
     2941 cctctcaagg gcctagctat catgatacga ggcgaatggg tgacggccgg gcaggagcag
     3001 gcatgataac ccaacattca agtaacgcat ccccaattaa tagaattgta caaatcagtg
     3061 gcaattccat gccaagagga agtggctccg gatttaagcc atttaagggt ggacctccgc
     3121 gacgattctg aaaatgagct ctctgccaag gttttaagat aatttattga aatctcctgt
     3181 aaactttact tgactactta tgaagaggac ctctgacttg cttgagagtt ctgtcagact
     3241 tttcttttta aaaatttaac atgattgctt ttctcaattt tggagaagat gtttaaatag
     3301 ttctgttgta acttttaata gttttgtgta tcattcaact ttttttcttg cagcaccgag
     3361 gcacatttga aaagatggaa ttgaagtcgt tttgtttaac gctgtgtgaa tataaagagt
     3421 agtttgcagc tgtgtggtag tggtttaatt tgcagcctta gctctgtggt gtctggctct
     3481 agagttactt ctttttacca agcattttca gcctccattt tgaaggctgt ctacacttaa
     3541 gaagtcttag ctgtctaatt tttagagaat aagattgttc attgcatttc tgagtattat
     3601 gtaacctatt tttgcagaag gtactgttac attaagtgca tctgtgtatc ctggtttaaa
     3661 aaaatgtaat cttttttgaa ataaaccttc atattctgta tagttgctaa agtgttgaga
     3721 acctttttaa ttgtaaaatg agaaccgatt ttcagtttag tgtagcagca cacttgttca
     3781 ggtttgcatg gtatgaaacc aaatagattc atgaaacctt ggccatgagg tttgtttcac
     3841 aaggttctta gaccgagttg tgcaggtaag tgcactttta ggtaatctgc actgtttgtt
     3901 tgatggataa attccatctc tgggaattgt gtgggtatta atgtttccat gttcccaact
     3961 atgttgagaa gtggaaaaaa acccaggttc tagatgggtg aatcagttgg gttttgtaaa
     4021 tacttgtatg tggggaagac attgttgtct ttttgtgaaa ataaaaatcc acacctggaa
//
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