U.S. flag

An official website of the United States government

PREDICTED: Homo sapiens zinc finger protein 135 (ZNF135), transcript variant X4, mRNA

NCBI Reference Sequence: XM_054322006.1

FASTA Graphics 

LOCUS       XM_054322006            3372 bp    mRNA    linear   PRI 26-AUG-2024
DEFINITION  PREDICTED: Homo sapiens zinc finger protein 135 (ZNF135),
            transcript variant X4, mRNA.
ACCESSION   XM_054322006
VERSION     XM_054322006.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060943) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3372
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="19"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..3372
                     /gene="ZNF135"
                     /gene_synonym="pHZ-17; pT3; ZNF61; ZNF78L1"
                     /note="zinc finger protein 135; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 1 EST, 72 long SRA reads, 12 Proteins, and 99%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 60 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:7694"
                     /db_xref="HGNC:HGNC:12919"
                     /db_xref="MIM:604077"
     CDS             102..2078
                     /gene="ZNF135"
                     /gene_synonym="pHZ-17; pT3; ZNF61; ZNF78L1"
                     /codon_start=1
                     /product="zinc finger protein 135 isoform X3"
                     /protein_id="XP_054177981.1"
                     /db_xref="GeneID:7694"
                     /db_xref="HGNC:HGNC:12919"
                     /db_xref="MIM:604077"
                     /translation="MTPGVRVSTDPEQVTFEDVVVDFSQEEWGQLKPAQRTLYRDVML
                     DTFRLLVSVGHWLPKPNVISLLEQEAELWAVESRLPQGVYPDLETRPKVKLSVLKQGI
                     SEEISNSVILVERFLWDGLWYCRGEDTEGHWEWSCESLESLAVPVAFTPVKTPVLEQW
                     QRNGFGENISLNPDLPHQPMTPERQSPHTWGTRGKREKPDLNVLQKTCVKEKPYKCQE
                     CGKAFSHSSALIEHHRTHTGERPYECHECLKGFRNSSALTKHQRIHTGEKPYKCTQCG
                     RTFNQIAPLIQHQRTHTGEKPYECSECGKSFSFRSSFSQHERTHTGEKPYECSECGKA
                     FRQSIHLTQHLRIHTGEKPYQCGECGKAFSHSSSLTKHQRIHTGEKPYECHECGKAFT
                     QITPLIQHQRTHTGEKPYECGECGKAFSQSTLLTEHRRIHTGEKPYGCNECGKTFSHS
                     SSLSQHERTHTGEKPYECSQCGKAFRQSTHLTQHQRIHTGEKPYECNDCGKAFSHSSS
                     LTKHQRIHTGEKPYECNQCGRAFSQLAPLIQHQRIHTGEKPYECNQCGRAFSQSSLLI
                     EHQRIHTKEKPYGCNECGKSFSHSSSLSQHERTHTGEKPYECHDCGKSFRQSTHLTQH
                     RRIHTGEKPYACRDCGKAFTHSSSLTKHQRTHTG"
ORIGIN      
        1 gaaatggagt taggctcgcg ccggcgcagt gtcggctgcc ggtgccgcgg cctttgtctc
       61 gcagtcagga ggggccagcc gttcctgcca gaagccaggg catgacccct ggggtgcgcg
      121 tctccacaga cccggagcaa gtgacgtttg aggacgtggt agtggacttc agccaggagg
      181 agtgggggca gctgaagcct gcccagagga ccctgtaccg tgatgtaatg ctggacacct
      241 tcaggcttct ggtctctgtg ggacattggt taccgaagcc gaatgtcatc tccctgctgg
      301 agcaagaggc agagctgtgg gcggtggagt ctagacttcc ccaaggcgtg tacccagact
      361 tggaaactag acccaaagtc aaactgtcag ttctaaagca aggcatctct gaagaaatat
      421 ccaacagtgt catcttggta gaaagattcc tgtgggatgg tctgtggtac tgcaggggtg
      481 aggacactga gggccactgg gaatggagtt gtgagagtct agagagcctg gcagtgccgg
      541 tggccttcac gcctgtgaag acgcctgttc tggagcagtg gcagaggaat gggtttgggg
      601 aaaacataag tctgaaccct gatctcccac atcaaccaat gactcctgaa agacaaagcc
      661 cccacacatg gggaacacgt ggaaaaaggg agaagccaga cctaaatgtt ttacagaaaa
      721 cctgtgtaaa agagaaaccc tacaaatgtc aggaatgcgg aaaggccttt agtcacagct
      781 cagcacttat cgaacaccac cggacgcaca caggagagag accttatgaa tgtcacgaat
      841 gcttaaaagg cttccggaac agctcggcac ttaccaaaca ccagagaatc catactgggg
      901 agaaacccta taaatgcact cagtgtggga ggaccttcaa ccaaattgcc ccactgatcc
      961 agcaccagag aactcacaca ggtgagaagc cctatgaatg cagcgaatgt gggaaatcct
     1021 tcagttttag gtcctccttc agccagcacg agcgaactca cacaggcgag aagccctacg
     1081 agtgcagtga gtgtgggaaa gccttccggc aaagcatcca cctcacccag catctgcgaa
     1141 tccacactgg ggagaaaccc tatcagtgtg gtgagtgtgg caaggccttc agccacagct
     1201 catccttgac caaacaccag cgaatccaca caggggagaa gccctacgag tgccatgagt
     1261 gtggaaaagc cttcacccag atcacaccac tgattcagca ccagaggacc cacacaggag
     1321 aaaagcccta tgagtgtggt gagtgtggga aagccttcag tcagagcaca ctcctgaccg
     1381 agcatcggag gattcacaca ggagagaagc cctatggatg caacgagtgt gggaaaacct
     1441 tcagccacag ctcctcactc agccagcatg agcggacaca cacaggagag aagccctatg
     1501 agtgcagtca gtgtgggaag gccttccggc agagcacaca cctcacccaa caccagcgaa
     1561 tccacacagg ggagaagccc tatgaatgca atgactgcgg caaggcattc agtcacagct
     1621 cgtccctcac caaacatcag cgaatccaca ctggggagaa gccctacgaa tgcaaccagt
     1681 gtggcagagc cttcagccag cttgctcccc tcattcagca tcagaggatc cacacaggag
     1741 agaaacccta tgaatgtaac cagtgtggca gagccttcag ccagagctcc cttctcatcg
     1801 aacaccagag gattcacacc aaggaaaagc cgtatgggtg caatgagtgt gggaaatcct
     1861 tcagccacag ctcctcgctc agccagcacg aaaggacgca cactggggaa aagccctatg
     1921 agtgtcacga ttgcggaaag tcctttaggc agagcaccca cctcactcag caccggagga
     1981 tccacacagg agagaagcca tatgcatgca gggactgtgg aaaggccttt acccacagct
     2041 cctcccttac caagcaccag agaactcaca ctggataaac ccactccaca tgtgctgggg
     2101 acataggaag accttaagcc atagctcatc cctttctaga tttgacccaa tcatacacat
     2161 gagaaacgta cgttcataca caagcctttt cacacagcac tcccctcaga caccctcaga
     2221 gagttcacac tgatgggaaa tgaccatggg accaccaagc tctaggtcat ccatctctgc
     2281 atccaaatag tagggaaacg tggagataat caacactcag gaccttcagc cttgaacgcc
     2341 cattagtgct atgttataga acctacaaaa aagaaatgga acaaatgtag tggatccagg
     2401 gaacgctttt gtccaaggat tcaccgtatt ccaaaccaga gatgttcaaa ttggtgagaa
     2461 acccaacaaa tgcctttcat atatacgaga accaaatgaa gtcagaattt gccattattg
     2521 cacattacat ttttgggggg gaaagtgctt atgaatggtg caggttgact ctgatattca
     2581 ttcccaaatg acagtatggc agagtgttcc agaaatgaga gtggcatctt tatggaatca
     2641 ctatggatac tgactgtctc agtaaacagc tgtcttgtct gtgtgtatat tgtttgatca
     2701 gggtacatgg cagccagtca cagattggaa ttacatatga caaagtatca gtgtactata
     2761 aacaggtttt tagttatccc tgcattattt ttgcaattaa tctttatatg caatgagatt
     2821 gaaaagcttt gtatgggaag actcaaaatg taaagctgct tccgtagagt ctcactgatt
     2881 ctgagatggc ttttgctgct ctgttctccc tctacatttc tctgcagaac tcgcgttaga
     2941 aacacagata tttgttttac aaaaagggag atttttcctt tgttaaacca tcgtcttata
     3001 agcaatagca aattcatgtt agaaacttct gttttgcaag attcatcttt tttgggatat
     3061 gttcaagtta atcctctcaa actgcttttt cattgttttc atacaattta acattttgtt
     3121 aaaccctaag tccacaaata gcagtctttc tgacaactat aacctttaaa tggtgacttg
     3181 ctgccctcat tagaaattgc attggctggc taggcgcggt gacttatgcc tgtaatccca
     3241 gcactttggg aggccaaggt gggaggatca cctgaggtcg ggagatggag gttgcagtga
     3301 gctgagatcg taccattgca ctccagcctg ggcaacaaga gtgaaactct gtctcagaaa
     3361 aaaaaaaaaa aa
//
102..2078
/gene="ZNF135"
/gene_synonym="pHZ-17; pT3; ZNF61; ZNF78L1"
/codon_start=1
/product="zinc finger protein 135 isoform X3"
/protein_id="XP_054177981.1"
/db_xref="GeneID:7694"
/db_xref="HGNC:HGNC:12919"
/db_xref="MIM:604077"
/translation="MTPGVRVSTDPEQVTFEDVVVDFSQEEWGQLKPAQRTLYRDVML
DTFRLLVSVGHWLPKPNVISLLEQEAELWAVESRLPQGVYPDLETRPKVKLSVLKQGI
SEEISNSVILVERFLWDGLWYCRGEDTEGHWEWSCESLESLAVPVAFTPVKTPVLEQW
QRNGFGENISLNPDLPHQPMTPERQSPHTWGTRGKREKPDLNVLQKTCVKEKPYKCQE
CGKAFSHSSALIEHHRTHTGERPYECHECLKGFRNSSALTKHQRIHTGEKPYKCTQCG
RTFNQIAPLIQHQRTHTGEKPYECSECGKSFSFRSSFSQHERTHTGEKPYECSECGKA
FRQSIHLTQHLRIHTGEKPYQCGECGKAFSHSSSLTKHQRIHTGEKPYECHECGKAFT
QITPLIQHQRTHTGEKPYECGECGKAFSQSTLLTEHRRIHTGEKPYGCNECGKTFSHS
SSLSQHERTHTGEKPYECSQCGKAFRQSTHLTQHQRIHTGEKPYECNDCGKAFSHSSS
LTKHQRIHTGEKPYECNQCGRAFSQLAPLIQHQRIHTGEKPYECNQCGRAFSQSSLLI
EHQRIHTKEKPYGCNECGKSFSHSSSLSQHERTHTGEKPYECHDCGKSFRQSTHLTQH
RRIHTGEKPYACRDCGKAFTHSSSLTKHQRTHTG"
Feature XM_054322006 : 1 segment
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.