U.S. flag

An official website of the United States government

PREDICTED: Homo sapiens schlafen family member 13 (SLFN13), transcript variant X11, mRNA

NCBI Reference Sequence: XM_054315206.1

FASTA Graphics 

LOCUS       XM_054315206            7406 bp    mRNA    linear   PRI 26-AUG-2024
DEFINITION  PREDICTED: Homo sapiens schlafen family member 13 (SLFN13),
            transcript variant X11, mRNA.
ACCESSION   XM_054315206
VERSION     XM_054315206.1
DBLINK      BioProject: PRJNA807723
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_060941) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_009914755.1-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7406
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /isolate="CHM13"
                     /db_xref="taxon:9606"
                     /chromosome="17"
                     /sex="female"
                     /cell_line="CHM13htert"
                     /tissue_type="hydatidiform mole"
                     /note="haploid cell line"
     gene            1..7406
                     /gene="SLFN13"
                     /gene_synonym="hSLFN13; SLFN10"
                     /note="schlafen family member 13; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 5 ESTs, 308 long SRA reads, 2 Proteins, and 95%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 13 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:146857"
                     /db_xref="HGNC:HGNC:26481"
                     /db_xref="MIM:614957"
     CDS             207..1907
                     /gene="SLFN13"
                     /gene_synonym="hSLFN13; SLFN10"
                     /codon_start=1
                     /product="schlafen family member 13 isoform X2"
                     /protein_id="XP_054171181.1"
                     /db_xref="GeneID:146857"
                     /db_xref="HGNC:HGNC:26481"
                     /db_xref="MIM:614957"
                     /translation="MVREKYIRPLTTEEWVEKMMDADPEFPPDFAEAFESQLSLSDSP
                     SLCRPVYSKKGLEHKADLQQHLFPVPPGHLECTPESLWKELSLQHEGLKELIHKQMRP
                     FSQGIVILSRSWAVDLNLQEKPGVICDALLIAQNSTPILYTILREQDAEGQDYCTRTA
                     FTLKQKLVNMGGYTGKVCVRAKVLCLSPESSAEALEAAVSPMDYPASYSLAGTQHMEA
                     LLQSLVIVLLGFRSLLSDQLGCEVLNLLTAQQYEIFSRSLRKNRELFVHGLPGSGKTI
                     MAMKIMEKIRNVFHCEAHRILYVCENQPLRNFISDRNICRAETRETFLREKFEHIQHI
                     VIDEAQNFRTEDGDWYRKAKTITQREKDCPGVLWIFLDYFQTSHLGHSGLPPLSAQYP
                     REELTRVVRNADEIAEYIQQEMQLIIENPPINIPHGYLAILSEAKWVPGVPGNTKIIK
                     NFTLEQIVTYVADTCRCFFERGYSPKDVAVLVSTVTEVEQYQSKLLKAMRKKMVVQLS
                     DACDMLGVHIVLDSVRRFSGLERSIVFGIHPRTADPAILPNILICLASRAKQHLYIFL
                     "
ORIGIN      
        1 ggaaacgcgg agtgtcctgg agcttgacgc gctggagctt gagaggtctt tcaggactga
       61 ttttggtgga agaagacagc aggcggtggg cattcactgt gctggtggga agtctggtta
      121 cattaagaaa ggaattctag caaagttatt ctgtaaatac aacagaatca gttgcttttg
      181 ttaaatatat tgctcccaag tcatggatgg tgagggagaa gtacatccgc cccttgacaa
      241 ctgaggaatg ggtagagaaa atgatggacg cagatccaga gtttcctcca gactttgctg
      301 aggcctttga gtctcagttg agtctatctg acagtccttc actttgcaga ccagtgtatt
      361 ctaagaaagg tctggaacac aaagctgatc tacaacaaca tttatttcca gttccaccag
      421 gacatttgga atgtactcca gagtccctct ggaaggagct gtctttacag catgaaggac
      481 taaaggagtt aatacacaag caaatgcgac ctttctccca gggaattgtg atcctctcta
      541 gaagctgggc tgtggacctg aacttgcagg agaagccagg agtcatctgt gatgctctgc
      601 tgatagcaca gaacagcacc cccattctct acaccattct cagggagcag gatgcagagg
      661 gccaggacta ctgcactcgc accgccttta ctttgaagca gaagctagtg aacatggggg
      721 gctacaccgg gaaggtgtgt gtcagggcca aggtcctctg cctgagtcct gagagcagcg
      781 cagaggcctt ggaggctgca gtgtctccga tggattaccc tgcgtcctat agccttgcag
      841 gcacccagca catggaagcc ctgctgcagt ccctcgtgat tgtcttactc ggcttcaggt
      901 ctctcttgag tgaccagctc ggctgtgagg ttttaaatct gctcacagcc cagcagtatg
      961 agatattctc cagaagcctc cgcaagaaca gagagttgtt tgtccacggc ttacctggct
     1021 cagggaagac catcatggcc atgaagatca tggagaagat caggaatgtg tttcactgtg
     1081 aggcacacag aattctctac gtttgtgaaa accagcctct gaggaacttt atcagtgata
     1141 gaaatatctg ccgagcagag acccgggaaa ctttcctaag agaaaaattt gaacacattc
     1201 aacacatcgt cattgacgaa gctcagaatt tccgtactga agatggggac tggtatagga
     1261 aggcaaaaac catcactcag agagaaaagg attgtccagg agttctctgg atctttctgg
     1321 actactttca gaccagtcac ttgggtcaca gtggccttcc ccctctctca gcacagtatc
     1381 caagagaaga gctcaccaga gtagttcgca atgcagatga aatagccgag tacatacaac
     1441 aagaaatgca actaattata gaaaatcctc caattaatat cccccatggg tatctggcaa
     1501 ttctcagtga agctaaatgg gttccaggtg ttccaggcaa cacaaagatt attaaaaact
     1561 ttactttgga gcaaatagtg acctatgtgg cagacacctg caggtgcttc tttgaaaggg
     1621 gctattctcc aaaggatgtt gctgtgcttg tcagcaccgt gacagaagtg gagcagtatc
     1681 agtctaagct cttgaaagca atgaggaaga aaatggtggt gcagctcagt gatgcatgtg
     1741 atatgttggg tgtgcacatt gtgttggaca gtgtccggcg attctcaggc ctggaaagga
     1801 gcatagtgtt tgggatccat ccaaggacag ctgacccagc tatcttaccc aatattctga
     1861 tctgtctggc ttccagggca aaacagcacc tatatatttt tctgtgaagt gactattagg
     1921 aagaactcca aaccaaaata ctgtgtaaat gtctatgggt gacagtctgc tgatggtaga
     1981 aacctttctt tttagttcac aagtcagtta gagatttgga cagagctgac acaaagagtt
     2041 tggagctccc ccatttctgg ctctcctttc aggggttcct cccccaactc ttttcagcag
     2101 tggtggctgc cccccattct gacccctgac tcttgcagcc agaaagatgg tggttttcta
     2161 aaggaacttt agctgtgctg cacaatgcag acctgtgtct tgctctctgg gtaaaagcca
     2221 taaaaataag aaactcagcc tgtggccttt cttccaaggc tggagttctc gagttctttt
     2281 atgtgacttc gtgtagtttg ttgctttaaa aaatttgtcc agaattgttt tctgcagaag
     2341 catggtctgt taggagctta caggccatag gagaagcagt tgtttcctga atttatcttt
     2401 gctgtattca tttagggctt gggagagtcc caagataatt cagtcactgt cagattaatc
     2461 atttcggcag aacaaacaat attgttatga ttatttaatc cttaaaattg tgatctccag
     2521 agtttgttat cagaataacc cagaccaagg cttaattgta atagtgaaca ttaatggtac
     2581 ctttacagag aaattatagg ccaagagaaa atgctggctt tcagtagaag ttaatattag
     2641 aaacccaaat ctggttctga aagtgtgtat cagatgtacg gtgaacaaac ttgggaaaga
     2701 ttttctttaa aaatcaatga gcgttggcca ggcacggtgg ctcacacctg taatcccagc
     2761 tgtttgggag gctgaggcag gtggatcacc tgaggtcagg agttcaagac cagcctggcc
     2821 aacatggaga aaccccatct ctactaaaaa tacaaaaatt agcagggcat ggtggtgcat
     2881 gcctgtatcc cagctacttg ggaggctgaa gcatgagaat cacttgaatc ctggaggcag
     2941 aggttgcagt gagctgagat catgtcactg tactccagcc tgggcaacag agtgagactg
     3001 tctcaaaaag aagaagaaga aaaaaaatgc agtgagttta tgttgttaca ttgtaacatc
     3061 tcagcgtagc tgtatgcatt actctatagc ataactactt aagttttatg tcattcttga
     3121 actgtgattt ttttttctat ttgctttcat agtttggtgg gccattgtta tggactgaat
     3181 gtttgtgtcc catcctcacc cctaaattcc catgttgaag ccccaacctt cactgtggag
     3241 ctggggctgc taaggaagta attaaggtta cacgaagtca cagtggagaa tctgatctgc
     3301 taagactggt gtccttatag ggagagaccc cagagagctt gttcccttcc tccctgtgca
     3361 cacaaacaag agggcatggg agcacacaga gagatggcag ccacctacaa gccaagagga
     3421 gaagcctcac aatgaacccc cccccccacc ctgctggcac ctatgtcttc gacttccagc
     3481 ccccagactg tgagaaataa atttctgttg gttcagccat ccagtctcta gtgttttgtt
     3541 attgcagcct gagaacacag ctgtatgatc attcatcaaa ctaaaaacac tgatacttaa
     3601 caatgctaat gcaattactt atttgctttt cagtctctac aaaacattct aaaacactaa
     3661 tctaaatact aacaataaaa tatttgcata actaatgaaa attaagaaac cacatgccca
     3721 atattccatt tataagtaat cctatttggc tgatttccct ccatattgta agttttgaac
     3781 ttttctgcca gtctttctcc tatttgtgtt aactcatgga attccagttg tctagccttg
     3841 aaattgtagg ctcttctaac ttgagcaaaa tctgacagat cagcaaaata aggagaaaaa
     3901 tatttcttct ttctttctgg ctgcattaaa tgagatacag ctcagcacca aaaagctatc
     3961 tttgtaaatg ttcttagtaa actccctggt ctttggagtt atttcagcct ttgagagtaa
     4021 ttctttaaaa gtctaattct gactggttga atctctctat atgatttatt gccctagtaa
     4081 tatttgaaac agtatcatat tttaaaatat ataaatattt atgaattttt gttcagccca
     4141 aagaggatta ctgatgcttt cttctttttc catatgatga ggaaatgttt agcttatata
     4201 tttattgcat ttctgtttta aataaaaaat tgagagtttg tgtttcatta aactgaaaaa
     4261 aaaggttctg taaaataaat gattaaatgg aggaaaagga gaagactgag gccagcaact
     4321 ccatgataca gccaaaaatg agccagtaaa agattaagca agattaactg taaatttttt
     4381 tttttttttt ttttaaagag aaaaggtctc actgtgtttc ccaggctgga gggtagtggt
     4441 gtgatcatag ttcactagag ccctgaactc ctgggctcaa gtgatcctct tgccttagcc
     4501 tcccattgct gggattatag gcatgagcca ctgtgtcagg cttaattggg ttttgatggg
     4561 tacctgccta tctctgtaat ttggctctag tcatatagga cctgcttcat taaagatctg
     4621 aaaatctatc cagccattgt aaaatgaaac aaaatgtttt gaaaatttaa attagccttt
     4681 tattttagtt cagacatata gaaaagttgc aagcatagta cagaaagttc ctatataccc
     4741 cacttagtgc cctccttttt aaaatttttt taaacctagc ttatttcctt taagatttct
     4801 gagaattcca ggaatgctca cagatctgtc cttgtagtct cctgccactt cttgctatgg
     4861 agtgctgtac caaggtctct gctagtttct agttggcttg acataatgac tttcctaaac
     4921 ttcttctgct ctgaatctca agcatggaaa gcggtcacat cttttgtttc acgaattaac
     4981 agtcaacacc tggccctact tttaacaaaa cttagtaaag ccttgagcat agtgaaagac
     5041 aaatatttaa attatatatt agcaggaggc tgaggtggga ggatcatatg aggccagcct
     5101 gggcagcata gcatgacccc cccctcgaga agacaacaaa aaattatctg ggtgtggtgg
     5161 tgtgctcctg cagtcctagc tattccagag gccgaggcga gaggatcgct tgattccagg
     5221 agttcaaggc tgtagttagc gataatcgtg tcactgaatc ctagcctggg caacagaata
     5281 agaccccatg tctaacaaaa taataataaa acaatcaaaa gtttaaaatt agttattaaa
     5341 tgtcagtgtg cccagagtcc tttgaccaca gatgatcctg atggccttct ctcgccttgt
     5401 ccctgtgcct ccttctacca tttttcttcc tgagattcaa aagtaagtag cggacagggt
     5461 tcccatttac cactaaatac ttcagtgggt gtttcctaaa aggacattta tagtaccatc
     5521 atcaaaatca gtaaattaac cctgatacta ttatctaatc tgtagacttt attgaattat
     5581 atcagttgtg cctcaagtgt ctttatgttt ttttctcaaa agagaaaaag ttctggtcca
     5641 ggatttgatc taagatcatg cattgtattg agctttcctt tcttttaagt ctcatttaat
     5701 ctggagatgt taatctgtct ttgtcatatc tttgacacta ttgaagagga ctggcctatt
     5761 attttgcaga gtatctgatt ttgggtcatt tcatgtgttc tcatgattag attcaggtta
     5821 tgcatttttg gcatgaattc catagaaggg ctgttacggt tctcagttca cggtattaga
     5881 aggcacttga tagtgattag ttccattcct gatgatgtta actctgatca tttggataaa
     5941 gtggcgtctg ccaggtttcc ctactgtgca gttacaattt gctttttgta attaataaag
     6001 tgtgtgtgtg tgtgtgtgtg gagggggggt gtttttgctt ctgaacgcat aatatttgag
     6061 atttttttct aattaaaaag taattattca aagagttcag agaactgata ctgatcacat
     6121 tctttgaccc cacatgcaaa tacattataa actagtaata aaacggtaac tagaaaaatg
     6181 ttcatatctt ttggaattaa aaaagtgttt aactcgtgga tcaaagcaga aattctgtaa
     6241 ccattgtcac agcaggttct aacaagcaag tttaaggagg agagaatttc agtcctagag
     6301 aatttcagtc ttattcaaat gctttcctag aaagaggaaa cagttcctaa ctaatttcat
     6361 gaggctggca taatcttgat aacaagtctg ataggtaaag tatgaaagga aaattgcagg
     6421 tcactcaatt atcactcaaa tatctacatg aaaaattcta aacaaaattt tagcaaacaa
     6481 aatccaacaa tttgtaaaag tgataataca ccacgaccaa ggtggttcaa gtcaggaatt
     6541 caacgttgat tttggcgtta aaaaatcaat catcaggccc agtgaggtgg ctcactcctg
     6601 taatcccaga ctttctggag gctgaaggag gaaagatcct tcaggccaga agtttgagtc
     6661 tgcactgagc tgtgactgca tcaccgcact ctagcctggg tgccagtttg agaccctgtc
     6721 tccaagaaaa aaaaattaat cagtgtaatt caccacagat taagagttca aaagagaaaa
     6781 atcacatgat catctgaata gaggaaaaag cttttgataa agttcaacat ccattcataa
     6841 taaggactct cagcaactta gaagtataaa aacacttttg gaaatcaaca aagggaattt
     6901 acagcatgaa caaacagcaa gccagcatgg tggctcacac ctgtaatctc agcacttcca
     6961 gaggccaagg caggagaatc acttgagccc aggggttaga gacaagcctt ggcaacatag
     7021 caagatcctg gctctacaaa aaataaaata aaatgaaata aaatttaaaa attagctggg
     7081 tttggtggtg tgtgcctgta gtcccagcta ctgggaggct gaggtgagag gatcactgga
     7141 gcccaggagg tgaaggctgc agtgggctaa aaacaaccag aacaaccccc caaccccctc
     7201 cccgcaaaac actataaaga atagcaacac aaggttcaat gtaaactttg atatggtgtt
     7261 ttacctctga ggagaggctt attgttaata ttctttagcc gtgtaagggg ttcacagatg
     7321 ttcatacttt tgttctttat accttatatg tattctataa atattgtttc tactcaatag
     7381 ttaataaaaa cataatttaa aagttc
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.