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NCBI Reference Sequence: XM_042480790.1
FASTA Graphics
LOCUS XM_042480790 8721 bp mRNA linear VRT 19-JUL-2021 DEFINITION PREDICTED: Sceloporus undulatus nuclear factor of activated T cells 5 (NFAT5), transcript variant X6, mRNA. ACCESSION XM_042480790 VERSION XM_042480790.1 DBLINK BioProject: PRJNA746303 KEYWORDS RefSeq. SOURCE Sceloporus undulatus (fence lizard) ORGANISM Sceloporus undulatus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Iguania; Phrynosomatidae; Phrynosomatinae; Sceloporus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_056529.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Sceloporus undulatus Annotation Release 100 Annotation Version :: 100 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..8721 /organism="Sceloporus undulatus" /mol_type="mRNA" /isolate="JIND9_A2432" /isolation_source="the sample came from two individuals: brain sample from one juvenile (IND9) and blood, liver, muscle, tail, brain samples from one adult (Adult2432)" /db_xref="taxon:8520" /chromosome="8" /sex="male" /ecotype="Alabama" /geo_loc_name="USA" /lat_lon="31.0915 N 86.5454 W" /collection_date="2016-08-14/2017-04-26" gene 1..8721 /gene="NFAT5" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns" /db_xref="GeneID:121937529" CDS 620..5083 /gene="NFAT5" /codon_start=1 /product="nuclear factor of activated T-cells 5 isoform X4" /protein_id="XP_042336724.1" /db_xref="GeneID:121937529" /translation="MYPVFTSELYTADASSAPSSSSMGGACSSFTTSSSPTIYSTSVT DSKAMQVESCSSAMGVSNRGVSDKQLTNNTVQQQQQQQQQLSTPKRDTVLYISPPPED LLDNSQMSCQDEGCGLESEQSCSMWVEDSPSNFSNMSTSSYNDNTEVPRKSRKRNPKQ RPGIKRRDCEESTMDIFDADSAKAPHYVLSQLSTDNKSNLKAGNGTSEAPKTTSGKKS PMLCGQYPSKNEGKELKIVVQPETQHRARYLTEGSRGSVKDRTQQGFPTVKLEGHNEP VTLQVFVGNDSGRVKPHGFYQACRVTGRNTTPCKEVDIEGTTVIEVGLDPSNNMTLAV DCVGILKLRNADVEARIGIAGSKKKSTRARLVFRVNIPRKDGSSLTLQTPSSPILCTQ PAGVPEILKKSLHTCSVKGEEEVFLIGKNFLKGTKVIFQENMSDENSWKAEAEIDMEL FHQNHLIVKVPPYHDQKITAPVSVGIYVVTNAGRSHDIQPFTYTPDTSSTLNVNVKQE ISSPTQPCSFDDAIKVNPSGCNLDKVNILPSALITPLRPNNIIKSEEAAPMELVPEKR SPSVFKTTSVVGPSQAPLESGMPSLLGNSTFSSSASHLAPENEKQPLPPKVYTPEAMP TLHTQDIVPPGSFPAASAGSQLQNSDTLLQQASPFPSRESQGPREMLQSDSAVMTLSQ LTEVSQQQSPLQDSSQALQQQISANIFSSPGRVSQLQNTIQQLQAGTFQSSTASSNSG NVDLVQQVLEAQQQLSSVLFSGSDNEDVQEQLNVEIFQQVSQIQNGVNQGMFSSDAVH SRAEDLLSSRTENIHPQPESSLSSQQQQQQQQQQQQQQQAMETSAAMVIEIQQGLCQA TSQMPSDLFSSSSSGNGNIQQSPVYQQASHLMGGLSTSEDMQMQCELFSSTNVSGNEG ATPPQRQQVPANGSALFQSSGSTKGEEVSSQAEQLRNDVYQAMVQMQHGGEGQVQVSL FSSSENMMQGNGAPPSQQQQPQPPPPPPSQGGGLFQQGGEMMSLQSGSFLQQAPHSQA QLFHSQSPIGDGQNISQEAPSSLFHSQSTATSSEQLPPPIFHSQAPMGVVQEQQAGSM FLSHSQNSMSGSVTREEPMTFFTTQNSISSLQASASAEQPASFQQQQQQQQAAQLSHL QGSLLPPQEQPPPSQQGIFQSQVPLGALPPSGVPPNQQEAMYQSSHSMAALQNSTQEQ QQQQQQQPNMHYSSQGPMGPMASPKQAMLFSSSPSSLTSQEQQQQSQSLFHPQNAMRT MNQDQQPMQFQNQSPGSSQAEPSQQPPPALFHSSPQLQLVQGSPSSQEQPLTLFISST SMSALQNSMSQQEMQQSSLYSSQSSMSGIQGTSSPPQQQQQQQQQQQQQQQQQQASLF HNGPGGGAISQLQNSSASSQQTSGIFLFGIQENCGQLLTSGSGALSEQMITISQPQGE VQPSVTTLLSQQMSENPQLSSAMTTNQNMKKIDDLLVSLQNQGNNNMAGSF" ORIGIN 1 gaatctgtct atgaccttct ccccaaggag ctgcagttgc ccccttccag agaactctcg 61 gccgcgtcca tgagtcaaac aagtggcggc gaggcaggct cacccccgcc gggtgtagtt 121 gctgctggat ttgcctctga agcagggagt gtctgcatta aaaatgacct gtagttctct 181 gcttcatagg ttagaaactt attttaatac tttgtggcta agcacagtcc catttttgga 241 gaggaaaaaa aattgctcaa cgattggcat tgaaatgtgg cctaaaagcg atatatcttg 301 cattgggatt tctatcattt tgtagaaaat ggcttaaatt gataaaccag ctgaggcaat 361 aaaagcgccc ttgtttgctt gcagcctttg tatgacttaa tggacatttt tttaaaaatc 421 tgattgccac acgcacaaaa atgaagctcc catttggaca ctgtttctga atatcactgt 481 gttgcttaag cctttgtcgc ttgaagtgtt tacatttgaa aaagcaagcc aaattctaaa 541 acattcattt gggggaaagg aattagtcca ccaatcacgt tatttcaaag ggactgctat 601 agccagcaca gttgggatca tgtaccctgt atttacttct gaattgtaca ccgcagatgc 661 ttcttcagct ccctcctctt cctccatggg cggtgcttgc agctccttta ccacctcttc 721 cagccccacc atttactcta cctcagttac tgacagcaaa gctatgcaag tggagagctg 781 ctcctcagcc atgggggtaa gtaaccgagg ggtaagtgac aagcagttaa ccaataacac 841 agtccagcag cagcaacagc agcagcagca actgtccaca ccgaagaggg acacagtcct 901 gtacatctcg ccgccaccag aggatctgct ggacaacagc cagatgtcct gccaggacga 961 ggggtgcgga ttggagtccg agcagagctg cagtatgtgg gtggaggatt ccccctccaa 1021 cttcagtaac atgagcacca gttcctacaa tgataacact gaggtgccgc gtaaatcacg 1081 taaaagaaat ccaaagcaaa ggccggggat caaacggcgg gattgtgaag agtcaaccat 1141 ggatatcttt gatgctgaca gtgccaaagc gcctcattat gtcctttctc agctcagcac 1201 ggacaacaaa agcaacctga aagcaggaaa tgggacatcg gaagccccca aaacaacaag 1261 tgggaagaag agccccatgt tatgtggcca gtaccctagc aaaaacgagg gcaaggagct 1321 gaagatagtg gtgcagccgg agacccagca cagagctcgc tatctgacgg aaggcagccg 1381 gggctcagtg aaagacagga cgcagcaagg attccccact gtcaagttgg aaggtcacaa 1441 tgagcctgtg acactgcaag tgtttgtggg gaatgactct ggtcgagtga agccacatgg 1501 attctaccag gcctgcaggg ttacaggacg aaacaccact ccctgcaaag aagtggacat 1561 agagggcacc actgtcatcg aggtgggctt ggatccgagt aacaacatga ccctggcggt 1621 ggactgtgtt gggatactga agctgaggaa tgcagatgtt gaagcccgaa taggcatcgc 1681 tggatccaag aagaaaagca ctcgggccag gctggtgttc cgcgtgaaca tccctcggaa 1741 ggatggctcc tctctcaccc tgcagacgcc atcctcacct attctgtgca ctcaaccagc 1801 aggtgtacca gagatcctaa agaagagttt gcacacctgt tcagtgaagg gagaagaaga 1861 agtctttctg attggcaaga atttcttgaa gggaaccaaa gtgatcttcc aagagaacat 1921 gtctgatgag aactcttgga aggcagaagc agaaatagac atggaactgt ttcatcagaa 1981 tcatctaatt gtaaaggtgc ccccatatca tgaccagaaa ataactgcac ctgtttctgt 2041 ggggatctat gtggtgacca atgctgggcg atcccatgac atacagccat tcacttacac 2101 tccggacaca tccagtactc tgaatgtgaa cgtgaaacag gaaatatcta gcccgacaca 2161 gccttgctct tttgatgacg caatcaaagt gaaccccagt ggctgtaacc tggacaaggt 2221 aaatattctt cccagtgcct tgataactcc actcaggcca aacaatatca ttaagagcga 2281 agaggctgct ccaatggagc ttgtgcctga aaaaagatcc ccttcagtct ttaagacaac 2341 cagtgtagtt ggtccctctc aagcacctct agagtccggc atgcccagcc tactgggaaa 2401 cagcactttc tcctcttctg cttctcactt ggctcctgag aatgaaaagc agccactgcc 2461 gcccaaggtg tatactccag aggcaatgcc taccctccat actcaggaca ttgtcccacc 2521 tggcagcttc ccagcagctt ctgctggcag ccagctgcag aacagcgaca ccttgttgca 2581 gcaggcatct ccattcccct caagagagtc ccaggggccc agagagatgc ttcagtctga 2641 cagtgcagtc atgactttgt ctcagctgac agaggtttcc cagcagcagt caccgcttca 2701 agactcgtcc caggctttac agcagcagat ctcggccaac atattttcat cacccggcag 2761 agtgagtcag ctgcagaaca cgatccaaca actgcaagca gggacctttc agtccagcac 2821 tgctagcagc aacagtggaa acgtggattt ggtccaacag gtcctggaag cacagcagca 2881 gttgtcgtct gtcttgtttt cagggtctga caatgaggac gttcaagagc agctcaatgt 2941 ggaaattttc cagcaggtca gccagatcca aaatggagtc aaccaaggga tgttttcctc 3001 tgatgcagtc cactcgaggg ctgaagacct gctatccagc agaacagaga acattcatcc 3061 acagcctgag agttctttgt ccagtcagca gcagcagcag cagcagcagc agcagcagca 3121 gcagcagcaa gcaatggaga cttctgcagc aatggtgatt gagatccagc aaggcctctg 3181 ccaggcaaca agccagatgc cgtccgactt gttctcctcc tcttcttcag gcaacggaaa 3241 catccagcag tccccagtgt accagcaagc ttcccacttg atgggtggcc tgtccacaag 3301 cgaagacatg caaatgcaat gtgagttgtt ctcttccacc aacgtttctg gcaatgaagg 3361 agcaacgcca ccccaacggc agcaggtgcc ggccaacggc tctgccctgt ttcagtcttc 3421 tggctccacc aaaggcgaag aagtatcaag ccaggcggaa cagttgcgga atgacgtcta 3481 tcaggctatg gtccaaatgc agcacggcgg ggagggtcag gtgcaggtca gcctcttctc 3541 ttcctccgag aacatgatgc aaggcaatgg agcaccaccg tcccagcagc agcaaccaca 3601 gccaccgccg ccaccaccat cccagggtgg aggcctcttc cagcagggtg gggagatgat 3661 gtccctccag tctggaagct tcttgcagca ggccccccac tctcaggctc agcttttcca 3721 ctctcagagc cctatcgggg acggccagaa catctcccag gaggctccaa gctccctctt 3781 ccatagtcag agcaccgcga cttcttcaga acagctgcca ccccccattt tccactcaca 3841 ggcccccatg ggggttgttc aggagcaaca ggccggcagc atgtttcttt ctcattctca 3901 gaattcaatg agtggctcag tcacacggga ggagcccatg acgttcttca ccacccagaa 3961 ttcgatttct tctttgcagg cctctgccag tgctgagcag ccagcctcat tccagcaaca 4021 gcagcaacaa cagcaggcgg ctcagctctc ccacctccag gggtctctgc ttcctccgca 4081 ggagcagcct ccgccttcac agcagggcat tttccagtca caagtgcccc tgggtgcact 4141 ccctccttca ggtgtgcccc caaaccaaca agaagccatg taccagtcct cacattcaat 4201 ggcagctctt cagaacagca cacaagagca gcagcagcag caacagcaac agccaaacat 4261 gcattacagc agccagggcc ccatgggccc catggcatcc ccgaagcagg ccatgctgtt 4321 cagctccagc cccagctccc tgaccagcca ggaacagcag caacagagcc agtctctctt 4381 ccacccacag aacgccatga ggaccatgaa tcaggaccag caacccatgc agttccagaa 4441 ccagagccca ggctcctccc aagctgagcc gtcccagcag ccaccgccgg ccttattcca 4501 cagctcccca cagctgcagc tggtccaagg ttctcccagc tcccaagagc agcctctcac 4561 ccttttcatc tcatcaactt ccatgtctgc cttacagaac agcatgagcc agcaggagat 4621 gcagcagtcc tccctctatt cttcacagag cagcatgtct ggcatccagg gtacttcttc 4681 acccccacaa cagcaacaac agcagcaaca acagcagcag cagcaacaac aacaacagca 4741 agcttccttg ttccataatg gccctggagg tggtgccatc agccagctgc agaattcatc 4801 tgcttcatct cagcagacct ctggaatatt tctttttggc atccaagaga actgtggcca 4861 gctcttaaca tctggatctg gtgcgttgtc tgaacagatg atcaccatta gccagccaca 4921 aggggaggtg cagccttctg tcactaccct cctgtctcag cagatgtcag agaaccccca 4981 gctgtcttcg gccatgacca ccaatcagaa tatgaagaag atcgatgacc tgcttgtgtc 5041 cttgcaaaac caggggaaca ataacatggc cggctccttc taactggtca gaaatcctgt 5101 gatggacagg cagatttgca agactccttt agttcttgtg actctgaaat ttagggtgtt 5161 tggacttcaa cttcctcatt caaaagatgg tctggaccta agggaaaaca tagccttcac 5221 ccttgctttg gaggagcatc cctgctgatc ctgggaaaca gctgttgtga aagagcatct 5281 gagagagaga cgtcttggaa ccaagagcag tggaagagct gtgctttgtg ttgctcaagc 5341 tgaaggctgg gcagttaccc ccatctctag cccctctgag gggatacaga gcatgaatgc 5401 tcagttatca gttggagcta ggtaaggaaa gaaaatggga ccgtgtgtct ccccaccctc 5461 ctctctttct agcctccgcg gctcttcagt gggagctgtg aaacatacag aaatatcctg 5521 ggtcccaaaa tcaattggtt gcacagatgt ctggttcaca cacttgtatt cgtcatttga 5581 tgacttatcc cgtgatttac agttgaatat ttctgtgatt tccattgaaa acggtttctt 5641 gaggcaatgt gaagtaacac aagtgttcag tccatagttg tgaatttcac acgtgtgcat 5701 catcgcttga tgctggaggt ggtgaacctc caggtgtgaa ctgagcccct ctgttgagta 5761 gaaatttctg ctgacttaat agaaatgggg aaagctgtga aataacgctg ggggtggtca 5821 gcacatgcta catagaacct gagagtctcc catggctttg aggtacagcc ttaaggagtg 5881 gggctggaag gggtctgtgt gctggggcag tgttgggggg ggtgggatcc aagaatgtga 5941 ccgcagcttc ttccggaagg gctgggtgta aactaataga gctgctgaaa ggagagggac 6001 tatcctaaat tcctggtgct ctgccagtct ccccactggg aaggacaagg cttgctcaac 6061 ggtttctctc tgagtcctgc ctccattggt tatgagctga atcctcaccc ccttaatccc 6121 ctttctgttt ccttgtctct tcttgtaaat atgctgccat ctcttgaaac ctgagctagc 6181 tttttaggag accagagagc cccagggctg gtagaggtcc agggctggac tcagcagagt 6241 gagcaggtgg gctccaacgt gccacgggga tgggctcacc atgttctgaa cccatgcagc 6301 caccgaaaga aaaagggaac ctgcaaaact ggcaggccct gagtcactta agttctctct 6361 ctctctctct ctctctcaca cacacataca cacacacaca cggttgctgg gggacaagaa 6421 ggggctaatg ggcaagccct tctgtggagt gggaaagtgt ttgcattcag tttggttttt 6481 gcgtgccacc caccttcctt tcccccctaa cttgtgctgg tgtgaagtct taaagtgaag 6541 cccagatatg aggccaggga agagtgtcag ttccttttgg gccttggggc tgtagctccc 6601 tcccagcagt ccctttgtaa aacacagagg agggcagtgg tggtgcattt gcacccatgc 6661 cctgccgttc ccccccccct tgaactcaat accccagggg cagactccgt ttcaggtgct 6721 ctccggggag cgctcgtcca agcctccctc ttccggattt ctgcttcttt ttctctcctg 6781 cacatcctac gctgttgcgt ggtgtcagtc gcacaacagc ttctatgtgt agctttcttt 6841 ggccttaggg aatgtgggtt tttttagtat gtgttggtgt ccatttttgt tcctcttgtg 6901 gaatggtttt ccaggttcct cctcgtgtgt tttttctgag gtgtgtcacc ttgagctacg 6961 tagagtcctg cttgggtttg ggaggggggt cattttggtt ctggttcttg tccagctaaa 7021 tgcaagtcca tcacgactga tttttgcagt gagtagtttg gtctgtctgt ctgtctgtct 7081 gtctctcctt gagaggctca agttatgttt tcagtagtac aggctatttt gccgatatga 7141 agggaacttt tcagaaagag acctgctcta ggtcatttaa ttttgaatac agttttcaat 7201 tgttcaagtt ttggatggtt tatatctaat gtgtgtttca ttattttttt tggaaagctc 7261 tattttgtat ttaggaaatg aactattttg ctatttgtac tgagtgagta cattggcata 7321 actatagact ataaatatac atatatatat atatgtacat gtatatatat atatttgcat 7381 atattcacac acatatattc tccttgccac agatttttgt ggtaaatgtg tgagttttat 7441 tgtctgttct cccacaacat ggtgtctagt agttggggga cggggttggg gtttgttaag 7501 tctttgcaaa gtattctaag tacttttttt gcagcgaacg tagtcgtgtt catctctggc 7561 cattccatca ggcagcatct gtactgattg gctatgaggg cagcttcgtt gccaaagtgg 7621 caggtctcac ttggcagtgt gacctagtgg gcaaatcccc cggggcaact tcttcggggg 7681 ctggcgggtt ccattcagca tgagccattc agcttttact cattgttcat gtctaatatt 7741 ttattgccag ctttttaatt tataataaca ctacagactc agattgaagc ctgtggcttt 7801 tctctgtccc ataatgtctg catagctccg gtgggaatgg ttaagacgtg aaggagcagc 7861 cacacaggtg cctcttccag acaggaataa gtggcagaag ggatggacaa gggatgggca 7921 atggcttctc ttttagcttt tgggggaacc cgtggctgtg ccctaaacag aggatttctt 7981 ctggaagaga cgtttcatcc caggcctcag tggctgcata gggctgaagt gtccagtgag 8041 agacaagtaa ggagcagttt agccaattcg ctgacctgga ctgtgtccac cgctgtcgca 8101 gggctgcttc tgggggacga ggacgaggca ccagggacca atctatccta ggctgaacca 8161 agtcttctgc ccaagtcctg ccagccactt ctccccagat gtttccggct gtacagcggt 8221 ggggcatcca tctatcctct gtctgtcaga aaggctccct ttgtggctgc tcacttaaaa 8281 tggcagcact catgtttcta gggttggttt taattcctgc tttttccttg gtccatttta 8341 ggtcaatatt taaatgtgca acattttgaa tttatgtggt ttggttacaa aaagtgtgtc 8401 tttggaacca agaagctgct cggtggctgc cagagactgg cgctgcatct ttcctataga 8461 ttttatcggg gtgatggcga gaggcagagg gggcctacta agatggagag gcaggtttcc 8521 tggggccctc tgaggtatgt ctttctgtcc cattttcact cccccatggc agttaggagc 8581 tcctcatatt tgcctgggcc attttacaag cttgttgcaa acaagcttgt aaaacgtgga 8641 ctacacaagg taactgttac atgggtttgt aactggttga ccggccgaac ccaaagggtg 8701 ttcaacaatg gctccttttc a //
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