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NCBI Reference Sequence: XM_039110859.2
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LOCUS XM_039110859 2617 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus syndecan binding protein (Sdcbp), transcript variant X5, mRNA. ACCESSION XM_039110859 VERSION XM_039110859.2 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086023) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XM_039110859.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2617 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="5" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..2617 /gene="Sdcbp" /gene_synonym="mda-9; TACIP18" /note="syndecan binding protein; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 mRNAs, 4 ESTs, 1497 long SRA reads, 18 Proteins" /db_xref="GeneID:83841" /db_xref="RGD:621497" CDS 617..1519 /gene="Sdcbp" /gene_synonym="mda-9; TACIP18" /codon_start=1 /product="syntenin-1 isoform X1" /protein_id="XP_038966787.1" /db_xref="GeneID:83841" /db_xref="RGD:621497" /translation="MSLYPSLEDLKVDKVIQAQTASSANPASQAFFLNVVDSAAFPPG GNLYPKLYPELSQYMGLSLSEAEICENMPVVSGAPTQGQLVARPSSVNYMVAPVTGND AGIRRAEIKQGIREVILCKDQDGKIGLRLKSVDNGIFVQLVQANSPASLVGLRFGDQV LQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTVTMHKDSSGHVGFIFKSG KITSIVKDSSAARNGLLTDHHICEINGQNVIGLKDAQIADILSTAGTVVTITIMPAFI FEHIIKRMAPSIMKSLMDHTIPEV" polyA_site 2617 /gene="Sdcbp" /gene_synonym="mda-9; TACIP18" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gctcagtgga tagggtgcag tccaagtcgc ttagggtgtt ttataactga ctgctgtgga 61 aatagaaatt aaatgatcca cttcaacttg gaaaggatct ctttgttttc ccagtatgga 121 agataaatgc ctatgattcc atccctctat aatgataaac actgagcttg agtgattttg 181 ttggagtttt ggagcactgt tatttgtgca aaactaaaaa actaaggagt gcagaggctg 241 gagccagtct tgatcacgca aaaggaggtc attgaaggcc cagttttctc caggagtttc 301 ctgcctgtgt gcattcctgc tattgtcagc tatgggagga attttatgag gagctgggaa 361 gctagggctg cttggggagg gtacataggt ggatgtgaag aagactagga ttgctgaggg 421 aagaaaggct gttagtagct ttcctgtgct ctcttctaga ctgtggagtt aaaaggtgac 481 tttattccga aggaaagttg ctagagcaat tgctatgcat aagatctgtg gacatctcat 541 ttgatctagg ccaaaaaaca aaacaaaaaa ctggctggat tttaagcaga gaagaaacaa 601 gaaaacacct gcaaaaatgt ctctctatcc atctcttgaa gatttgaagg tagacaaagt 661 aattcaggct caaactgcct cttctgctaa tcctgccagc caggcctttt ttttaaatgt 721 ggtcgattct gctgccttcc ctccaggtgg aaatctctat cctaaactgt atccagaact 781 ctctcaatac atgggactgt ctttaagtga agctgaaata tgtgaaaaca tgcctgtggt 841 ctctggagcg ccaacccaag ggcagttggt agcaaggcca tccagtgtga actacatggt 901 agcacctgtg acaggtaacg atgcggggat taggagagca gagattaagc aagggattcg 961 ggaagtcatt ttgtgtaagg atcaagatgg aaaaattggg ctcagactga agtcagtaga 1021 taatggtata tttgttcaac tagtccaggc taattcccca gcctccttgg ttgggctgcg 1081 atttggggac caggtgctcc agatcaatgg tgaaaactgt gccggctgga gctccgataa 1141 ggcacacaag gtgctcaagc aggcctttgg agagaagatt accatgacca ttcgtgatag 1201 accctttgaa cggacagtta ccatgcataa ggacagcagt ggacatgttg gctttatctt 1261 taaaagtgga aaaatcacat ccatagtgaa agacagttct gctgccagaa acggccttct 1321 cactgatcac cacatctgtg agatcaacgg acagaacgtc attggcttga aggatgctca 1381 gattgcagat atactgtcaa cagctgggac tgtggtcacc atcacaatca tgcctgcctt 1441 tatcttcgaa catattatta aacggatggc tcccagcatt atgaaaagcc tgatggatca 1501 caccattcct gaagtttaaa ccttgtacag tgcatcaccg ccgaacgctt ccagtcttcc 1561 tcttcggcaa cttctctatt tcaccgcaca tgaagctttc ccggatccag ggagactgtg 1621 ctgcatggag acctgtctat cttccaccat ggctgggaac ctcactctat ctgagagcgt 1681 cttcagattt taagataggt gtagccttat cctggtttta cagatgtgaa actctcaaaa 1741 gattccctga ctttctagac ttggttcttt actgggaacc tgatgttttt ctataagcca 1801 ttgtgattag gatgactggt gtaggcttag ctgtgtccga gaactggtct gctttctccg 1861 agaagtgcac agtgctaggc acgtgcttca gttctgtggc atatgtggat tgtagtacat 1921 cagcatagta cctgtaggat gattgccttt gatcgctact ttttaagttt gtgtgtgagt 1981 gtgtaaaatt ccagttaatc aacacttcca ttccacaaaa gcattataca gttctgtgta 2041 ggtggcaaga gactaatgat tgtcactaaa ttctaactac cttcacttaa tgtgcttcag 2101 ttgtcgcctt aactacagta agcatttaga ataaaagcca aaatagaatt attgctgcct 2161 tctgaaacct gagaggttag ctctctatca agctgttcta tgctagccct gagcagctta 2221 ctggtgtcgc agagctgcct agctgtacca agattttcta gtcactgcat aaaggaaacg 2281 cctaagagtt gccgtattgc tttctgagat acaaattgct atatatttca tgtaaaagtt 2341 gttatactaa ataggataaa ttttggagtc tctttttcac tcgtagatta agtgggtaat 2401 atctaatttg gcacttgagt cctaacatta tgtaacttta gctaggttgg ggtgggttta 2461 gaatgtttcc ctagtcatct cagtttgttc cattttctga ctctatcctg caaacaaaaa 2521 tggcaatgac actttatcct gactctttcc ttcttagttt gtgcctatct tattatttta 2581 tgtgatatta tcctattaaa tgtataaaaa tattaaa //
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