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PREDICTED: Rattus norvegicus aryl hydrocarbon receptor nuclear translocator 2 (Arnt2), transcript variant X3, mRNA

NCBI Reference Sequence: XM_039101491.2

FASTA Graphics 

LOCUS       XM_039101491            6269 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus aryl hydrocarbon receptor nuclear
            translocator 2 (Arnt2), transcript variant X3, mRNA.
ACCESSION   XM_039101491
VERSION     XM_039101491.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086019) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_039101491.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6269
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..6269
                     /gene="Arnt2"
                     /note="aryl hydrocarbon receptor nuclear translocator 2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 5 ESTs, 150 long SRA reads, 15
                     Proteins"
                     /db_xref="GeneID:25243"
                     /db_xref="RGD:2154"
     CDS             165..2270
                     /gene="Arnt2"
                     /codon_start=1
                     /product="aryl hydrocarbon receptor nuclear translocator 2
                     isoform X2"
                     /protein_id="XP_038957419.1"
                     /db_xref="GeneID:25243"
                     /db_xref="RGD:2154"
                     /translation="MASDIPGSVTLPVAPMAATGQVRMAGAMPARGGKRRSGMDFDDE
                     DGEGPSKFSRENHSEIERRRRNKMTQYITELSDMVPTCSALARKPDKLTILRMAVSHM
                     KSMRGTGNKSTDGAYKPSFLTEQELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVL
                     NQPQSEWFGSTLYEQVHPDDVEKLREQLCTSENSMTGRILDLKTGTVKKEGQQSSMRM
                     CMGSRRSFICRMRCGNAPLDHLPLNRITTMRKRFRNGLGPVKEGEAQYAVVHCTGYIK
                     AWPPAGMSIPEEDADVGQGSKYCLVAIGRLQVTSSPVCMDMSGMSVPTEFLSRHNSDG
                     IITFVDPRCISVIGYQPQDLLGKDILEFCHPEDQSHLRESFQQVVKLKGQVLSVMYRF
                     RTKNREWLLIRTSSFTFQNPYSDEIEYVICTNTNVKQLQQQQAELEVHQRDGLSSYDL
                     SQVPVPNLPTGVHEAGKPVEKADAIFSQERDPRFAEMFAGISASEKKMMSSASASGSQ
                     QIYSQGSPFPAGHSGKAFSSSVVHVPGVNDIQSSSSTGQNISQISRQLNQGQVAWTGS
                     RPPFPGQPSKTQSSAFGIGSSHPYPADPSSYSPLSSPAASSPSGNAYPSLANRTPGFA
                     ESGQSGGQFQGRPSEVWSQWQSQHHGQQSGEQHSHQQPGQTEVFQDMLPMPGDPTQGT
                     GNYNIEDFADLGMFPPFSE"
     polyA_site      6269
                     /gene="Arnt2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ttttcagaac ctaagcagtt aacgctggaa attttgctgc aaataaattg atcagtatgc
       61 aagacagttg tcacggctga atcatggtcc acagttaagc atatcctcct aagaaggtgt
      121 tgttcacaag gaagaaaggt ctttgttcaa ccctctgaga agaaatggct tcagacatac
      181 ctggatctgt gaccttgcct gttgccccca tggcggccac gggacaggtg agaatggcag
      241 gggccatgcc tgcccgagga ggaaagcggc gatccggaat ggactttgat gacgaagatg
      301 gtgaaggtcc cagtaaattt tcaagagaga accacagtga gattgagcgg cgcaggcgga
      361 acaagatgac tcaatatatt acggaactct ccgacatggt tcccacctgc agtgcactag
      421 ctaggaagcc agacaagctc accattctac gcatggcggt ctcacacatg aagtccatga
      481 ggggcaccgg caacaaatct actgacggcg catataagcc ttccttcctc actgagcagg
      541 aactgaagca tctcatcctt gaagctgctg acggatttct gtttgtggtg gctgccgaga
      601 cagggagagt aatctacgtg tctgattctg tcactcctgt cctgaaccag ccacagtcag
      661 agtggtttgg gagcacactc tatgaacagg tgcaccctga tgacgtggag aaactgagag
      721 aacagctgtg tacttcagaa aactccatga caggccgcat cctagacctg aagactggga
      781 cagtgaagaa ggagggacag cagtcgtcca tgcgcatgtg tatgggctcc cggcgctcct
      841 tcatctgtag aatgaggtgt ggaaatgctc ccttggacca cctgcctttg aacagaataa
      901 ccaccatgag gaaaaggttc aggaatggcc ttggccctgt gaaagaagga gaagcccaat
      961 atgccgtggt ccactgcaca ggttacatca aggcttggcc accagcagga atgagcatac
     1021 ccgaagaaga tgctgatgtt ggacaaggca gtaaatattg ccttgtggca atcgggaggc
     1081 tccaggtgac cagctctcct gtgtgcatgg acatgagtgg catgtcagtg cccacggagt
     1141 tcctgtctcg gcataactct gatgggatca tcacgtttgt agacccaaga tgcatcagtg
     1201 tgattggcta ccagccccag gaccttctgg gaaaagatat tttggaattc tgccaccctg
     1261 aggatcagag ccacctacgg gagagcttcc agcaggtggt taaactgaag ggccaagtgc
     1321 tgtcggtcat gtacaggttc cgcaccaaga accgggagtg gctgttgatc cgcaccagca
     1381 gcttcacctt ccagaacccc tactctgatg agatcgagta tgtcatctgc accaacacca
     1441 acgtcaagca acttcagcag cagcaggcag agctggaggt acaccagcga gacgggctgt
     1501 catcatatga cttgtctcag gtcccggtac ccaacctacc cactggtgtt catgaggcag
     1561 ggaagcctgt ggaaaaggca gatgcgatct tctcccaaga gagagaccct cgttttgctg
     1621 agatgtttgc aggcatcagt gcatcggaga agaagatgat gagctcagcc tcagcatccg
     1681 gcagccagca gatctactcc caaggaagtc cattccctgc cgggcactcg ggcaaggcct
     1741 tcagctcttc tgtggtccat gtgcctggag tgaatgacat tcagtcctcc tcctcaacgg
     1801 gccagaacat atcccagatc tcccggcagc tgaaccaggg ccaggtggca tggacaggca
     1861 gccgtccacc cttcccaggg cagcccagca agacgcagtc atctgccttc ggaattggat
     1921 caagccaccc ctacccagcc gacccttcat cctacagtcc tctctccagc ccagctgcct
     1981 cctcaccaag cggaaacgca taccccagtc ttgccaacag gactccaggg tttgctgaga
     2041 gtggacagag tggagggcaa ttccagggcc ggccctcaga ggtctggtcc cagtggcaga
     2101 gccagcatca cggacagcag agcggtgagc agcactccca ccagcagcct ggccagactg
     2161 aagtgttcca ggacatgcta cccatgccgg gcgacccgac gcaggggact ggcaactata
     2221 acatcgagga ctttgctgac ctgggcatgt tccctccatt ttctgagtag cttcaggcaa
     2281 agccaggctt ctactgccca ggcgctatta tcataccata gatgcccatg ttcaaagagt
     2341 gccccctcac ccagcttgcc ctgctgcaga acccccggaa atctccctta ttccccatcc
     2401 tccccggaca tggcatctcc tggctctaat ccacagcgct ggcttcttgg atttgggtct
     2461 ttgtatttat tgtactttat ctgtgtgctc ggaaggggcc tccagggtct taaatcccat
     2521 tgtgaataat ctattaatgg acagtttgca cccatcaagt gttgacttgg catccacaat
     2581 ggctggcagc accagcaggt ctgcccggtg cagaagctgg gtttctttct gctttttccg
     2641 cagctgctgc ctggagactt cgtgtcagag tgagaggcaa taacctctac attctgtgct
     2701 ggagcccaga gaacaggatg taagtctccc actctcaccc atccttgatg gcctgggacc
     2761 aggtgtgctt taaacagtga gagtcaaagt tgtggcttgg tagatgtact gtggtgtgtc
     2821 agtgtgtgtg gccagtgaga gtgagaagca gttcccattc agctgcagca tttcaaagga
     2881 gagcatgaat gcaacccacg gggctgactc cccagaagtc agccctgggg agctgctcgc
     2941 tttgtaaatc agttctttgg tcccctgccc ttttacagac atcctccact tctagccctt
     3001 cctctttgtg acctgtgaga gcactcaccc ttctcctact aggcctgagg gacagtgtgc
     3061 tgaatccatg aaggtcaatg cattttccct gctctgcaga cagccgagct gctttctgcc
     3121 cagcgccttc gggaagtcag acctgtacag ggttaggata cctctcctct aagtgtgcct
     3181 gataccttct gctcagtaac ctggaaagaa gatggggcca ccctttgggt ggagaagggt
     3241 tccctgggcc accccggcct ctgtcttcat caggcaggag aagtaggagt atctcagggg
     3301 acatagccag gcctatgagg ccagggactc tgctctgacc atgcttctac aaagacctga
     3361 attcctcagt ggtcttaagg tagaactatg agctaacttc taaacagtgg ttctcagcct
     3421 gtgggctgtg ttgggggtgt cagacaacca tttcacaggg gtcgtatatc aggtctcctg
     3481 catatttgaa tatttacata atgatatata acagtaaaga tttacactta tgaaatagca
     3541 atgaaaatga ttttatggtt gagggtcacc actacatgag gaactatatt aaagggtcac
     3601 agagttaaga aggttgagag ccattgttct agaagcttct gcctggctta tctctgacat
     3661 cagagtccct gtgtcagcca gattttaaag aggttcagat tccacccatt ccaccctgcc
     3721 cttcccacac tccatgtgct tctgtgagtt tgcctccctt cacttaatca accctcacct
     3781 caggtacctc acatcagtat cagcccactg gtgtccaaat gtgagagaaa ctacagaact
     3841 accttaagca ggccctgggg tcctccagag tcccttcatg aaccccttgt tagaactatg
     3901 gcggtgcatg ctctcagaac agacgtgcct tgctgcctgg ctcccgggga gctggggtac
     3961 aagaggctcc aggatgcaca ggggcaggag gagcatggag attaagggcc taggagaaca
     4021 ccgcccattc agaagcccag ctctgcctgg catcgaggga caccagtgtt ttcacaggac
     4081 tcatggcaaa cttaacttgg ctcagcacac tgcccttggc agcagcccgc cctaagggac
     4141 cccgttcctg acaaactctg gccccagaga tcctcaagaa gctttgagtg cttccatgga
     4201 gagtagtaac acagtctgag cttcatcgca gcctcagaac ccccagcagt ctcctatgtg
     4261 tgctgcctga tttggctcct gtccccagca gcctggagct ggcctcgggt ggtgagcaaa
     4321 agttacaaaa gggggaaagg gcccaaagct agcttcagga gcaaagaatg ccttccagtg
     4381 atgaaagtag ccatgacctt tagcttgtga gttaagaagt gtgggagcta tgggttttgt
     4441 tttattgcct ttggtgggaa gtggggggct tttcttgggt gtaacatggg ctgtcacact
     4501 gccttgggtt cagggcacaa aggtctgcag aaaaaaagaa gaacagaatt cttgcttgca
     4561 atcatttcat atcctctctc tgtaaagaag tctagggtat agtcacctca gcccttggtc
     4621 ctgaggagca gaggggggcg ttcttgggca accacaaacc agacaatagc aagcactgat
     4681 aaaaggctcc tgcttgcccc gtccccagtc ttatctagga aggtccacag ctagaaggtg
     4741 ggaacttagg ctggcttgag ttctgcatct tttctatacc tcctctgctt ctatattgtg
     4801 attctcaaaa gccacatgtg gaggaggtgg gggagaatcc catcccacaa ggacttctca
     4861 cacccaagtg tttttgaaac acacgggagt cagaatcaaa gctgttatcc tgcaaaagat
     4921 gtcccctcat atgtcccctg cagagaagcc aatatgctgg cccttcagtt aatatccatc
     4981 cagcttcccg ccctggtggg gtcttagctg gctagagagg gacaggggat gttggcttcc
     5041 tacagttctg tacttcatca ttccctgctg aagtccaagt ggctcctttt cggctaagca
     5101 agcaggagag ggacatgtaa ggaccacctg agtcattggc aagggcacag gagctccaga
     5161 agaatgggcc agagactgcc aggccagcca aggatggttc tagaaccctg ccttgatgtc
     5221 attcctgttt gtttcgttgt ggtttcaggg agggagtgag ccagcatgaa catccacatt
     5281 catcacgctc agctcagcct cttgtgtcat aaagtgacta atgtggatag tagtatttgg
     5341 gttggtgact taatccactg aggagctcac actcccctgt cattaggagg acagtgaggc
     5401 cccaggttag cccactggca agcatccagg ctcccttcag ctccgagcta cagatctggc
     5461 aggtctgtca tctcatgtag cacagtccag ccaatgagca gtagccactc ccactgtgag
     5521 ctcccctgat cctgacatct atggcctgtc tcacaagcaa aaacaagtca tttgctaatc
     5581 accaacagaa agacaaaatt aaaaccctct ttgtatgtgg ccatgggttg ctatgtccta
     5641 acttgccaat ccatcctccc ctcccctccc aagctgatgt tcacctgaag tgccaccact
     5701 ggagagactg aagcaggaag ggtcatgagc tcaggagttc aagacctacc tgggcaagat
     5761 aatgaaacta atcttaaaaa caaatctata gctgagtgac ttggccacat ttcatgtgct
     5821 gaggagccac cagctccctg gcagccagtc tcctccattg cctagaatct gggacagctt
     5881 taaagaggta gctcacaagg gcacgggcac atttccacat gtgacatgcc ctgtcttgtg
     5941 ccctaagctg ggttggttca agtagcctgc aaatccttgt gggtactggc tatagcaaaa
     6001 tggagctttt tcacaggtca tccagggccc aacagtttgc tttgtctaac tgtttcctta
     6061 aaacttcaca agcaggcttc caagaacaac aagcacttac tcatctctct cttagccttt
     6121 cttatggatg tgaaccgtgc cgtgggtaaa tcatttgtat ttcttgaatg ttctgtatga
     6181 ctaacaggta ttaagtcact ggttatatgt ataactaatg taactgcctt ttaaattttc
     6241 attacaataa aaaatgactt tgctctgaa
//
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