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NCBI Reference Sequence: XM_039101491.2
FASTA Graphics
LOCUS XM_039101491 6269 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus aryl hydrocarbon receptor nuclear translocator 2 (Arnt2), transcript variant X3, mRNA. ACCESSION XM_039101491 VERSION XM_039101491.2 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086019) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XM_039101491.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6269 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="1" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..6269 /gene="Arnt2" /note="aryl hydrocarbon receptor nuclear translocator 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 mRNAs, 5 ESTs, 150 long SRA reads, 15 Proteins" /db_xref="GeneID:25243" /db_xref="RGD:2154" CDS 165..2270 /gene="Arnt2" /codon_start=1 /product="aryl hydrocarbon receptor nuclear translocator 2 isoform X2" /protein_id="XP_038957419.1" /db_xref="GeneID:25243" /db_xref="RGD:2154" /translation="MASDIPGSVTLPVAPMAATGQVRMAGAMPARGGKRRSGMDFDDE DGEGPSKFSRENHSEIERRRRNKMTQYITELSDMVPTCSALARKPDKLTILRMAVSHM KSMRGTGNKSTDGAYKPSFLTEQELKHLILEAADGFLFVVAAETGRVIYVSDSVTPVL NQPQSEWFGSTLYEQVHPDDVEKLREQLCTSENSMTGRILDLKTGTVKKEGQQSSMRM CMGSRRSFICRMRCGNAPLDHLPLNRITTMRKRFRNGLGPVKEGEAQYAVVHCTGYIK AWPPAGMSIPEEDADVGQGSKYCLVAIGRLQVTSSPVCMDMSGMSVPTEFLSRHNSDG IITFVDPRCISVIGYQPQDLLGKDILEFCHPEDQSHLRESFQQVVKLKGQVLSVMYRF RTKNREWLLIRTSSFTFQNPYSDEIEYVICTNTNVKQLQQQQAELEVHQRDGLSSYDL SQVPVPNLPTGVHEAGKPVEKADAIFSQERDPRFAEMFAGISASEKKMMSSASASGSQ QIYSQGSPFPAGHSGKAFSSSVVHVPGVNDIQSSSSTGQNISQISRQLNQGQVAWTGS RPPFPGQPSKTQSSAFGIGSSHPYPADPSSYSPLSSPAASSPSGNAYPSLANRTPGFA ESGQSGGQFQGRPSEVWSQWQSQHHGQQSGEQHSHQQPGQTEVFQDMLPMPGDPTQGT GNYNIEDFADLGMFPPFSE" polyA_site 6269 /gene="Arnt2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttttcagaac ctaagcagtt aacgctggaa attttgctgc aaataaattg atcagtatgc 61 aagacagttg tcacggctga atcatggtcc acagttaagc atatcctcct aagaaggtgt 121 tgttcacaag gaagaaaggt ctttgttcaa ccctctgaga agaaatggct tcagacatac 181 ctggatctgt gaccttgcct gttgccccca tggcggccac gggacaggtg agaatggcag 241 gggccatgcc tgcccgagga ggaaagcggc gatccggaat ggactttgat gacgaagatg 301 gtgaaggtcc cagtaaattt tcaagagaga accacagtga gattgagcgg cgcaggcgga 361 acaagatgac tcaatatatt acggaactct ccgacatggt tcccacctgc agtgcactag 421 ctaggaagcc agacaagctc accattctac gcatggcggt ctcacacatg aagtccatga 481 ggggcaccgg caacaaatct actgacggcg catataagcc ttccttcctc actgagcagg 541 aactgaagca tctcatcctt gaagctgctg acggatttct gtttgtggtg gctgccgaga 601 cagggagagt aatctacgtg tctgattctg tcactcctgt cctgaaccag ccacagtcag 661 agtggtttgg gagcacactc tatgaacagg tgcaccctga tgacgtggag aaactgagag 721 aacagctgtg tacttcagaa aactccatga caggccgcat cctagacctg aagactggga 781 cagtgaagaa ggagggacag cagtcgtcca tgcgcatgtg tatgggctcc cggcgctcct 841 tcatctgtag aatgaggtgt ggaaatgctc ccttggacca cctgcctttg aacagaataa 901 ccaccatgag gaaaaggttc aggaatggcc ttggccctgt gaaagaagga gaagcccaat 961 atgccgtggt ccactgcaca ggttacatca aggcttggcc accagcagga atgagcatac 1021 ccgaagaaga tgctgatgtt ggacaaggca gtaaatattg ccttgtggca atcgggaggc 1081 tccaggtgac cagctctcct gtgtgcatgg acatgagtgg catgtcagtg cccacggagt 1141 tcctgtctcg gcataactct gatgggatca tcacgtttgt agacccaaga tgcatcagtg 1201 tgattggcta ccagccccag gaccttctgg gaaaagatat tttggaattc tgccaccctg 1261 aggatcagag ccacctacgg gagagcttcc agcaggtggt taaactgaag ggccaagtgc 1321 tgtcggtcat gtacaggttc cgcaccaaga accgggagtg gctgttgatc cgcaccagca 1381 gcttcacctt ccagaacccc tactctgatg agatcgagta tgtcatctgc accaacacca 1441 acgtcaagca acttcagcag cagcaggcag agctggaggt acaccagcga gacgggctgt 1501 catcatatga cttgtctcag gtcccggtac ccaacctacc cactggtgtt catgaggcag 1561 ggaagcctgt ggaaaaggca gatgcgatct tctcccaaga gagagaccct cgttttgctg 1621 agatgtttgc aggcatcagt gcatcggaga agaagatgat gagctcagcc tcagcatccg 1681 gcagccagca gatctactcc caaggaagtc cattccctgc cgggcactcg ggcaaggcct 1741 tcagctcttc tgtggtccat gtgcctggag tgaatgacat tcagtcctcc tcctcaacgg 1801 gccagaacat atcccagatc tcccggcagc tgaaccaggg ccaggtggca tggacaggca 1861 gccgtccacc cttcccaggg cagcccagca agacgcagtc atctgccttc ggaattggat 1921 caagccaccc ctacccagcc gacccttcat cctacagtcc tctctccagc ccagctgcct 1981 cctcaccaag cggaaacgca taccccagtc ttgccaacag gactccaggg tttgctgaga 2041 gtggacagag tggagggcaa ttccagggcc ggccctcaga ggtctggtcc cagtggcaga 2101 gccagcatca cggacagcag agcggtgagc agcactccca ccagcagcct ggccagactg 2161 aagtgttcca ggacatgcta cccatgccgg gcgacccgac gcaggggact ggcaactata 2221 acatcgagga ctttgctgac ctgggcatgt tccctccatt ttctgagtag cttcaggcaa 2281 agccaggctt ctactgccca ggcgctatta tcataccata gatgcccatg ttcaaagagt 2341 gccccctcac ccagcttgcc ctgctgcaga acccccggaa atctccctta ttccccatcc 2401 tccccggaca tggcatctcc tggctctaat ccacagcgct ggcttcttgg atttgggtct 2461 ttgtatttat tgtactttat ctgtgtgctc ggaaggggcc tccagggtct taaatcccat 2521 tgtgaataat ctattaatgg acagtttgca cccatcaagt gttgacttgg catccacaat 2581 ggctggcagc accagcaggt ctgcccggtg cagaagctgg gtttctttct gctttttccg 2641 cagctgctgc ctggagactt cgtgtcagag tgagaggcaa taacctctac attctgtgct 2701 ggagcccaga gaacaggatg taagtctccc actctcaccc atccttgatg gcctgggacc 2761 aggtgtgctt taaacagtga gagtcaaagt tgtggcttgg tagatgtact gtggtgtgtc 2821 agtgtgtgtg gccagtgaga gtgagaagca gttcccattc agctgcagca tttcaaagga 2881 gagcatgaat gcaacccacg gggctgactc cccagaagtc agccctgggg agctgctcgc 2941 tttgtaaatc agttctttgg tcccctgccc ttttacagac atcctccact tctagccctt 3001 cctctttgtg acctgtgaga gcactcaccc ttctcctact aggcctgagg gacagtgtgc 3061 tgaatccatg aaggtcaatg cattttccct gctctgcaga cagccgagct gctttctgcc 3121 cagcgccttc gggaagtcag acctgtacag ggttaggata cctctcctct aagtgtgcct 3181 gataccttct gctcagtaac ctggaaagaa gatggggcca ccctttgggt ggagaagggt 3241 tccctgggcc accccggcct ctgtcttcat caggcaggag aagtaggagt atctcagggg 3301 acatagccag gcctatgagg ccagggactc tgctctgacc atgcttctac aaagacctga 3361 attcctcagt ggtcttaagg tagaactatg agctaacttc taaacagtgg ttctcagcct 3421 gtgggctgtg ttgggggtgt cagacaacca tttcacaggg gtcgtatatc aggtctcctg 3481 catatttgaa tatttacata atgatatata acagtaaaga tttacactta tgaaatagca 3541 atgaaaatga ttttatggtt gagggtcacc actacatgag gaactatatt aaagggtcac 3601 agagttaaga aggttgagag ccattgttct agaagcttct gcctggctta tctctgacat 3661 cagagtccct gtgtcagcca gattttaaag aggttcagat tccacccatt ccaccctgcc 3721 cttcccacac tccatgtgct tctgtgagtt tgcctccctt cacttaatca accctcacct 3781 caggtacctc acatcagtat cagcccactg gtgtccaaat gtgagagaaa ctacagaact 3841 accttaagca ggccctgggg tcctccagag tcccttcatg aaccccttgt tagaactatg 3901 gcggtgcatg ctctcagaac agacgtgcct tgctgcctgg ctcccgggga gctggggtac 3961 aagaggctcc aggatgcaca ggggcaggag gagcatggag attaagggcc taggagaaca 4021 ccgcccattc agaagcccag ctctgcctgg catcgaggga caccagtgtt ttcacaggac 4081 tcatggcaaa cttaacttgg ctcagcacac tgcccttggc agcagcccgc cctaagggac 4141 cccgttcctg acaaactctg gccccagaga tcctcaagaa gctttgagtg cttccatgga 4201 gagtagtaac acagtctgag cttcatcgca gcctcagaac ccccagcagt ctcctatgtg 4261 tgctgcctga tttggctcct gtccccagca gcctggagct ggcctcgggt ggtgagcaaa 4321 agttacaaaa gggggaaagg gcccaaagct agcttcagga gcaaagaatg ccttccagtg 4381 atgaaagtag ccatgacctt tagcttgtga gttaagaagt gtgggagcta tgggttttgt 4441 tttattgcct ttggtgggaa gtggggggct tttcttgggt gtaacatggg ctgtcacact 4501 gccttgggtt cagggcacaa aggtctgcag aaaaaaagaa gaacagaatt cttgcttgca 4561 atcatttcat atcctctctc tgtaaagaag tctagggtat agtcacctca gcccttggtc 4621 ctgaggagca gaggggggcg ttcttgggca accacaaacc agacaatagc aagcactgat 4681 aaaaggctcc tgcttgcccc gtccccagtc ttatctagga aggtccacag ctagaaggtg 4741 ggaacttagg ctggcttgag ttctgcatct tttctatacc tcctctgctt ctatattgtg 4801 attctcaaaa gccacatgtg gaggaggtgg gggagaatcc catcccacaa ggacttctca 4861 cacccaagtg tttttgaaac acacgggagt cagaatcaaa gctgttatcc tgcaaaagat 4921 gtcccctcat atgtcccctg cagagaagcc aatatgctgg cccttcagtt aatatccatc 4981 cagcttcccg ccctggtggg gtcttagctg gctagagagg gacaggggat gttggcttcc 5041 tacagttctg tacttcatca ttccctgctg aagtccaagt ggctcctttt cggctaagca 5101 agcaggagag ggacatgtaa ggaccacctg agtcattggc aagggcacag gagctccaga 5161 agaatgggcc agagactgcc aggccagcca aggatggttc tagaaccctg ccttgatgtc 5221 attcctgttt gtttcgttgt ggtttcaggg agggagtgag ccagcatgaa catccacatt 5281 catcacgctc agctcagcct cttgtgtcat aaagtgacta atgtggatag tagtatttgg 5341 gttggtgact taatccactg aggagctcac actcccctgt cattaggagg acagtgaggc 5401 cccaggttag cccactggca agcatccagg ctcccttcag ctccgagcta cagatctggc 5461 aggtctgtca tctcatgtag cacagtccag ccaatgagca gtagccactc ccactgtgag 5521 ctcccctgat cctgacatct atggcctgtc tcacaagcaa aaacaagtca tttgctaatc 5581 accaacagaa agacaaaatt aaaaccctct ttgtatgtgg ccatgggttg ctatgtccta 5641 acttgccaat ccatcctccc ctcccctccc aagctgatgt tcacctgaag tgccaccact 5701 ggagagactg aagcaggaag ggtcatgagc tcaggagttc aagacctacc tgggcaagat 5761 aatgaaacta atcttaaaaa caaatctata gctgagtgac ttggccacat ttcatgtgct 5821 gaggagccac cagctccctg gcagccagtc tcctccattg cctagaatct gggacagctt 5881 taaagaggta gctcacaagg gcacgggcac atttccacat gtgacatgcc ctgtcttgtg 5941 ccctaagctg ggttggttca agtagcctgc aaatccttgt gggtactggc tatagcaaaa 6001 tggagctttt tcacaggtca tccagggccc aacagtttgc tttgtctaac tgtttcctta 6061 aaacttcaca agcaggcttc caagaacaac aagcacttac tcatctctct cttagccttt 6121 cttatggatg tgaaccgtgc cgtgggtaaa tcatttgtat ttcttgaatg ttctgtatga 6181 ctaacaggta ttaagtcact ggttatatgt ataactaatg taactgcctt ttaaattttc 6241 attacaataa aaaatgactt tgctctgaa //
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