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PREDICTED: Rattus norvegicus geranylgeranyl diphosphate synthase 1 (Ggps1), transcript variant X4, mRNA

NCBI Reference Sequence: XM_039095523.2

FASTA Graphics 

LOCUS       XM_039095523            5306 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus geranylgeranyl diphosphate synthase 1
            (Ggps1), transcript variant X4, mRNA.
ACCESSION   XM_039095523
VERSION     XM_039095523.2
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086035) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_039095523.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5306
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..5306
                     /gene="Ggps1"
                     /gene_synonym="Crlf3; rGGPS1a; rGGPS1a1; rGGPS1a2;
                     rGGPS1a3"
                     /note="geranylgeranyl diphosphate synthase 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 ESTs, 33 long SRA reads, 1 Protein"
                     /db_xref="GeneID:291211"
                     /db_xref="RGD:1359680"
     CDS             163..969
                     /gene="Ggps1"
                     /gene_synonym="Crlf3; rGGPS1a; rGGPS1a1; rGGPS1a2;
                     rGGPS1a3"
                     /codon_start=1
                     /product="geranylgeranyl pyrophosphate synthase isoform
                     X3"
                     /protein_id="XP_038951451.1"
                     /db_xref="GeneID:291211"
                     /db_xref="RGD:1359680"
                     /translation="MEKTKEKAERILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPED
                     KLQIIIEVTEMLHNASLLIDDIEDSSKLRRGFPVAHSIYGVPSVINSANYVYFLGLEK
                     VLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDTYTCPTEEEYKAMVLQKTGGLFGLAV
                     GLMQLFSDYKEDLKPLLDTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTI
                     HAIWSRPESTQVLLCNSSWPRTPGSISLASASSSARIKCVSYHDAWQRLC"
     polyA_site      5306
                     /gene="Ggps1"
                     /gene_synonym="Crlf3; rGGPS1a; rGGPS1a1; rGGPS1a2;
                     rGGPS1a3"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ggagatttct gtgtgaaata gggggagggc tccaagaaag cttcaggaag agcggcagtc
       61 tgaacaataa agtggggaat tggcgtgggt actgctagtc tcgtttcggc ggcttcaagt
      121 ctgagatcat cgtggaaccg tcaactttga aattaataaa acatggagaa aactaaagag
      181 aaagctgaaa gaattcttct agagccttat aagtacttac ttcaattacc aggtaaacag
      241 gtgagaacca aactttcaca ggcatttaat cactggctga aagttccaga agacaagcta
      301 cagattatca ttgaagtgac tgaaatgttg cataatgcca gtttactcat tgatgatatt
      361 gaagacagtt caaagctccg acgtggtttt ccagttgctc acagcatcta tggtgtccca
      421 tctgtcatta actctgccaa ttatgtctac ttccttggcc tggaaaaagt cttaacactt
      481 gatcacccag atgcagtgaa gcttttcaca cgacagcttt tggaacttca tcagggacaa
      541 ggcctagata tttactggag agatacctac acttgtccga ctgaagaaga atataaagcc
      601 atggtgttgc agaagacagg tggcttgttt ggattagccg taggcctcat gcagttgttc
      661 tctgactaca aagaagatct aaagccactg ctggacacac ttgggctctt cttccagatt
      721 agagatgatt acgccaatct acactccaaa gaatacagtg aaaacaaaag tttctgtgaa
      781 gacctgacag aaggaaagtt ctcatttcct actattcatg ccatttggtc aaggccagaa
      841 agcacccagg ttttactatg caattctagc tggcctagaa ctccaggatc tattagcctg
      901 gcttctgcct cttcaagtgc tagaatcaaa tgtgtgtcct accatgatgc ctggcaaaga
      961 ctgtgttaag tcaattgact ataaacaact ggacattaaa aaatggagtt aagacactag
     1021 acaagcctgt aaaaccacca ctgaagctaa ggcaagagga tcgtagttca agaacagtct
     1081 gacctccata ggaagttggg gcccagatag attgcatact cagaccttaa tcacaaaaaa
     1141 cagaaatact gagttaagga agcagggtat tattgaagta agacatgcat ttgagataca
     1201 aattaggaat ttttaaaaac tcagattttc tcaaagtttt gtgaaagtgg atttgtatag
     1261 gatggagtca ttatgcagga ggcataatgc aggaggcagg tccaggataa ggcgaagcct
     1321 atcattggat gagaaggaag ggtgggggag tgggggtggg ggaattctag gaaggagaaa
     1381 ggaggaagag aagcagggaa tcaaggatga cccagatcca agtggtcttg aattgccaag
     1441 atagctggga tggacttctg taggcaagtt ttatcttatc taggagggca gtttatatcc
     1501 ttatcaattg gttataagtt tattgtgtgg atgtattata gattgagaat ttaaaatata
     1561 aatctgattg ttgggttaca gtttgttgag tcttgatttt actgggtagt tgggagttta
     1621 tactttaact acaagggggc agttgctgga aatgtgggca gagtccacgg cagagagctt
     1681 caataggcca gccgctgctg gacttctaga accatgattt tgcagggtag ctggaaccag
     1741 agagtttgtg gctagcagag agccaccagg agagatacta atctgagata aattagcgcc
     1801 agttcaactg gcaaccgcca gggtatgcat gggaactgtt ccaccactct tttattatta
     1861 tcacaacaga tttgtgattt gataaaagtg taaatgtgaa cagaaagatg acttagactg
     1921 tcaagtactt gcataaacat gaggatctga gttttgatcc ccagcatcca cataaaagca
     1981 gaatgtgaca gtgtaatgta ttttaatgtt tgccttataa actcagcgtt gaggaggggg
     2041 agagaggcct tggataccct gggaagccat tctaactgaa tctgtaagtt gcaaggcaga
     2101 gagagaacct gtctaaaaaa taatgtgaaa aacctattga agaagacacc tgatcttgat
     2161 ttctggtatc cacatgctca tacatatatg catacagtta taaacatgta cacacacaaa
     2221 agtatgataa ctgtattaat ttgccagagc ctgaaacttg gccagttaag atttgtaaag
     2281 ctgcgggttg caggtaaaga atgaataaat acagttatag cattcagtga gtgcttagta
     2341 gggactgaag gtggcaccac agttagaaac acctgctcct gcctaggacc tgggatcagg
     2401 tccccgcacc acatagtatt atgtttacat gttcacacag gcgtgtatac ctgtgtgcac
     2461 aggtacatgt gcacaagtat atatggacat gaaggtcaga ggtcaatacc aagtaactta
     2521 cttgatcact ttatttttta gacagggtca ttgtagtcct ggttgtcctg gaattctctg
     2581 caacactaca ctggtctcaa actcacagag atccccctgc ctcttccttc tgccttggtc
     2641 acgttttact cttttttaat agttttattt gtcattagtg tgtgtcaggg tgctggtgca
     2701 tgcatgcgac aaagcatata cagagtaaag gacaccactt tgaagtcagt tctctccttc
     2761 caccgtgggt tccaggaatc aaacaagtca gcagatacac acagcaatct ggtcagcccc
     2821 aactttattt tttgacacag ggtatttcac tgaatctaga acttaataat ttggctaggc
     2881 tgcctagtcg ctgagttcta gggatgggcc tttctccacc tccccaactg tggttactga
     2941 tctgcgtcac actcagtgtt tacatcggtg tgctgggatc ggaatccaag tcctcctgcg
     3001 cgtgtggtag gcactttacc atgatccagc actctgccat ctaattttta cttatcattg
     3061 tcctgataca aaacaagtct gaaggggata gaagaaccaa ttctgagcca aatatgagtg
     3121 tccatgcacc agctacacaa aatcatgtca ccctgaatgg catgtttctg tgaagaaggc
     3181 tttacaaatt taaaaaacat tctttattaa atgtattata tctagtgtgt atgtgctatg
     3241 gcctgcacgt ggaggccaga agacagcttt tacaacttgt ggaaatcagt tccgtctttc
     3301 tcccatatgg gtccttggaa ttgaactcag gattggtggc aagtaactac ttgctgaacc
     3361 agccccctgc ccagtttcat aaacttagac agttacagag caaaaagtca cgaatcagtg
     3421 catttcccaa atgcagttag agatgtcagg aaggttgtag ccacagcagg acgaagtgtg
     3481 tgctgagttt cgtgtgtgct gagcctcgtg tgtgctgagc ctcgtgtgtg ccgagcttcc
     3541 tgtgtgccaa gccttgtgtg tgttgagctt cctgtgtgct gagcctcgtg tgtactgagc
     3601 ctcgtgtgtg ctgagcctcg tgtgtaccga acttcctgtg tgccaagcct tgtgtgtgtt
     3661 gagcttcctg tgtgccgagc cttgtgtgtg ttgagcttcc tgtgtgctga gcctcgtgtg
     3721 tgctgagcct cctgtgtgcc gagcctcctg tgtgccgagc ctcgggtgtg ccgagcttcc
     3781 tgtgtgccga gcctcgtgtg tgccgagctt cctgtgtgcc gagcctcctg tgtgccgagc
     3841 ttcctgtgtg ccgagcctcc tatgtgccga gcttcctgtg tgccgagctt caggcgctac
     3901 tttgtaacat cctcagcttt agaggtgggc caggctactg ccctgcaagc tcaaccgtgc
     3961 attccaagtg gggtgacaca tatctataac ccaattccaa agacaaaacc aagacagttg
     4021 tgaatttgag actagcttgt accatatagc aagttcaagg tcagtctgga ccctgactga
     4081 ccccgtctct aagaaccaaa acaaaagcat gcattccaca agttgtgcct tgtattcaca
     4141 aaatgttagg ccacataccg aggttgttag tagatggtta ttaaaagatc tgaagatagt
     4201 ccaggatgtt ttgggctctc aatctgttac agtctttttt ctatagtcac caaagttcta
     4261 gttagccctc caatctgtag ttcttcagca gagccgaaga acctacactt ccatccacag
     4321 gtggacccta cccatgtgtc agcagtcaac ggtcaccttt gagcccctct cctaatactt
     4381 gctgaaagtg attgcctttt cccatcttgt caccaattac tttatcgccc ttagtttaat
     4441 ctgaatgatc ctatgggtgg ctgatcaacc cacacactct ttttaaatgt acagagtatt
     4501 gtaatgttgc cgatctggcg tgtgacagct ctggggagga aaaaggggtc ctggcggtca
     4561 ggagtcggaa tagcacagag aaacactgca tgacaaccta acacagaaga tttattggtg
     4621 aggacaatag aggtggctgc ctctgctcca gagaggagag aactgatgag gcaggatttc
     4681 tcacttgggg gtggggttgg gggattccag ggtgcctggg actggaagga ttttgtgccc
     4741 taatcttggg ctcttttatg tagggtgggg cctggccagt ctcctgcctc aagggactgg
     4801 aaacagctgt tactgtcata gagaaggctg ggggctgtgt attggagggg gaggcctagc
     4861 cactcttgcc tcaatgggct tacagctccc ttttttgttt actattgata aacaatcttt
     4921 tgaaattgct tttcacacta agaacaagat tcaaaagaag aggcaagaag gacaaaaaat
     4981 caaaatctgg atctccttgc ctaggagctt agctgtttct actgtgaatt tataattttg
     5041 agagcagtat ctgtttcctt tttctaaaaa aaaaaattaa gacaggttca ccagaataga
     5101 gctcagttga aaggaggttt gccaacatag ggccttgcat ttgattccca gcactgcata
     5161 agatggcaca gtggcattca cctatatccc cagcacctgg gaggtggagg ccctagaaca
     5221 aggaggtcag gtcatcctcg actatatact tagtttaagg ccaacctggg ctgtttaaga
     5281 aagaaaagaa aagaaaagaa aagaaa
//
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