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NCBI Reference Sequence: XM_039095523.2
FASTA Graphics
LOCUS XM_039095523 5306 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus geranylgeranyl diphosphate synthase 1 (Ggps1), transcript variant X4, mRNA. ACCESSION XM_039095523 VERSION XM_039095523.2 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086035) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XM_039095523.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5306 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="17" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..5306 /gene="Ggps1" /gene_synonym="Crlf3; rGGPS1a; rGGPS1a1; rGGPS1a2; rGGPS1a3" /note="geranylgeranyl diphosphate synthase 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 ESTs, 33 long SRA reads, 1 Protein" /db_xref="GeneID:291211" /db_xref="RGD:1359680" CDS 163..969 /gene="Ggps1" /gene_synonym="Crlf3; rGGPS1a; rGGPS1a1; rGGPS1a2; rGGPS1a3" /codon_start=1 /product="geranylgeranyl pyrophosphate synthase isoform X3" /protein_id="XP_038951451.1" /db_xref="GeneID:291211" /db_xref="RGD:1359680" /translation="MEKTKEKAERILLEPYKYLLQLPGKQVRTKLSQAFNHWLKVPED KLQIIIEVTEMLHNASLLIDDIEDSSKLRRGFPVAHSIYGVPSVINSANYVYFLGLEK VLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDTYTCPTEEEYKAMVLQKTGGLFGLAV GLMQLFSDYKEDLKPLLDTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTI HAIWSRPESTQVLLCNSSWPRTPGSISLASASSSARIKCVSYHDAWQRLC" polyA_site 5306 /gene="Ggps1" /gene_synonym="Crlf3; rGGPS1a; rGGPS1a1; rGGPS1a2; rGGPS1a3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggagatttct gtgtgaaata gggggagggc tccaagaaag cttcaggaag agcggcagtc 61 tgaacaataa agtggggaat tggcgtgggt actgctagtc tcgtttcggc ggcttcaagt 121 ctgagatcat cgtggaaccg tcaactttga aattaataaa acatggagaa aactaaagag 181 aaagctgaaa gaattcttct agagccttat aagtacttac ttcaattacc aggtaaacag 241 gtgagaacca aactttcaca ggcatttaat cactggctga aagttccaga agacaagcta 301 cagattatca ttgaagtgac tgaaatgttg cataatgcca gtttactcat tgatgatatt 361 gaagacagtt caaagctccg acgtggtttt ccagttgctc acagcatcta tggtgtccca 421 tctgtcatta actctgccaa ttatgtctac ttccttggcc tggaaaaagt cttaacactt 481 gatcacccag atgcagtgaa gcttttcaca cgacagcttt tggaacttca tcagggacaa 541 ggcctagata tttactggag agatacctac acttgtccga ctgaagaaga atataaagcc 601 atggtgttgc agaagacagg tggcttgttt ggattagccg taggcctcat gcagttgttc 661 tctgactaca aagaagatct aaagccactg ctggacacac ttgggctctt cttccagatt 721 agagatgatt acgccaatct acactccaaa gaatacagtg aaaacaaaag tttctgtgaa 781 gacctgacag aaggaaagtt ctcatttcct actattcatg ccatttggtc aaggccagaa 841 agcacccagg ttttactatg caattctagc tggcctagaa ctccaggatc tattagcctg 901 gcttctgcct cttcaagtgc tagaatcaaa tgtgtgtcct accatgatgc ctggcaaaga 961 ctgtgttaag tcaattgact ataaacaact ggacattaaa aaatggagtt aagacactag 1021 acaagcctgt aaaaccacca ctgaagctaa ggcaagagga tcgtagttca agaacagtct 1081 gacctccata ggaagttggg gcccagatag attgcatact cagaccttaa tcacaaaaaa 1141 cagaaatact gagttaagga agcagggtat tattgaagta agacatgcat ttgagataca 1201 aattaggaat ttttaaaaac tcagattttc tcaaagtttt gtgaaagtgg atttgtatag 1261 gatggagtca ttatgcagga ggcataatgc aggaggcagg tccaggataa ggcgaagcct 1321 atcattggat gagaaggaag ggtgggggag tgggggtggg ggaattctag gaaggagaaa 1381 ggaggaagag aagcagggaa tcaaggatga cccagatcca agtggtcttg aattgccaag 1441 atagctggga tggacttctg taggcaagtt ttatcttatc taggagggca gtttatatcc 1501 ttatcaattg gttataagtt tattgtgtgg atgtattata gattgagaat ttaaaatata 1561 aatctgattg ttgggttaca gtttgttgag tcttgatttt actgggtagt tgggagttta 1621 tactttaact acaagggggc agttgctgga aatgtgggca gagtccacgg cagagagctt 1681 caataggcca gccgctgctg gacttctaga accatgattt tgcagggtag ctggaaccag 1741 agagtttgtg gctagcagag agccaccagg agagatacta atctgagata aattagcgcc 1801 agttcaactg gcaaccgcca gggtatgcat gggaactgtt ccaccactct tttattatta 1861 tcacaacaga tttgtgattt gataaaagtg taaatgtgaa cagaaagatg acttagactg 1921 tcaagtactt gcataaacat gaggatctga gttttgatcc ccagcatcca cataaaagca 1981 gaatgtgaca gtgtaatgta ttttaatgtt tgccttataa actcagcgtt gaggaggggg 2041 agagaggcct tggataccct gggaagccat tctaactgaa tctgtaagtt gcaaggcaga 2101 gagagaacct gtctaaaaaa taatgtgaaa aacctattga agaagacacc tgatcttgat 2161 ttctggtatc cacatgctca tacatatatg catacagtta taaacatgta cacacacaaa 2221 agtatgataa ctgtattaat ttgccagagc ctgaaacttg gccagttaag atttgtaaag 2281 ctgcgggttg caggtaaaga atgaataaat acagttatag cattcagtga gtgcttagta 2341 gggactgaag gtggcaccac agttagaaac acctgctcct gcctaggacc tgggatcagg 2401 tccccgcacc acatagtatt atgtttacat gttcacacag gcgtgtatac ctgtgtgcac 2461 aggtacatgt gcacaagtat atatggacat gaaggtcaga ggtcaatacc aagtaactta 2521 cttgatcact ttatttttta gacagggtca ttgtagtcct ggttgtcctg gaattctctg 2581 caacactaca ctggtctcaa actcacagag atccccctgc ctcttccttc tgccttggtc 2641 acgttttact cttttttaat agttttattt gtcattagtg tgtgtcaggg tgctggtgca 2701 tgcatgcgac aaagcatata cagagtaaag gacaccactt tgaagtcagt tctctccttc 2761 caccgtgggt tccaggaatc aaacaagtca gcagatacac acagcaatct ggtcagcccc 2821 aactttattt tttgacacag ggtatttcac tgaatctaga acttaataat ttggctaggc 2881 tgcctagtcg ctgagttcta gggatgggcc tttctccacc tccccaactg tggttactga 2941 tctgcgtcac actcagtgtt tacatcggtg tgctgggatc ggaatccaag tcctcctgcg 3001 cgtgtggtag gcactttacc atgatccagc actctgccat ctaattttta cttatcattg 3061 tcctgataca aaacaagtct gaaggggata gaagaaccaa ttctgagcca aatatgagtg 3121 tccatgcacc agctacacaa aatcatgtca ccctgaatgg catgtttctg tgaagaaggc 3181 tttacaaatt taaaaaacat tctttattaa atgtattata tctagtgtgt atgtgctatg 3241 gcctgcacgt ggaggccaga agacagcttt tacaacttgt ggaaatcagt tccgtctttc 3301 tcccatatgg gtccttggaa ttgaactcag gattggtggc aagtaactac ttgctgaacc 3361 agccccctgc ccagtttcat aaacttagac agttacagag caaaaagtca cgaatcagtg 3421 catttcccaa atgcagttag agatgtcagg aaggttgtag ccacagcagg acgaagtgtg 3481 tgctgagttt cgtgtgtgct gagcctcgtg tgtgctgagc ctcgtgtgtg ccgagcttcc 3541 tgtgtgccaa gccttgtgtg tgttgagctt cctgtgtgct gagcctcgtg tgtactgagc 3601 ctcgtgtgtg ctgagcctcg tgtgtaccga acttcctgtg tgccaagcct tgtgtgtgtt 3661 gagcttcctg tgtgccgagc cttgtgtgtg ttgagcttcc tgtgtgctga gcctcgtgtg 3721 tgctgagcct cctgtgtgcc gagcctcctg tgtgccgagc ctcgggtgtg ccgagcttcc 3781 tgtgtgccga gcctcgtgtg tgccgagctt cctgtgtgcc gagcctcctg tgtgccgagc 3841 ttcctgtgtg ccgagcctcc tatgtgccga gcttcctgtg tgccgagctt caggcgctac 3901 tttgtaacat cctcagcttt agaggtgggc caggctactg ccctgcaagc tcaaccgtgc 3961 attccaagtg gggtgacaca tatctataac ccaattccaa agacaaaacc aagacagttg 4021 tgaatttgag actagcttgt accatatagc aagttcaagg tcagtctgga ccctgactga 4081 ccccgtctct aagaaccaaa acaaaagcat gcattccaca agttgtgcct tgtattcaca 4141 aaatgttagg ccacataccg aggttgttag tagatggtta ttaaaagatc tgaagatagt 4201 ccaggatgtt ttgggctctc aatctgttac agtctttttt ctatagtcac caaagttcta 4261 gttagccctc caatctgtag ttcttcagca gagccgaaga acctacactt ccatccacag 4321 gtggacccta cccatgtgtc agcagtcaac ggtcaccttt gagcccctct cctaatactt 4381 gctgaaagtg attgcctttt cccatcttgt caccaattac tttatcgccc ttagtttaat 4441 ctgaatgatc ctatgggtgg ctgatcaacc cacacactct ttttaaatgt acagagtatt 4501 gtaatgttgc cgatctggcg tgtgacagct ctggggagga aaaaggggtc ctggcggtca 4561 ggagtcggaa tagcacagag aaacactgca tgacaaccta acacagaaga tttattggtg 4621 aggacaatag aggtggctgc ctctgctcca gagaggagag aactgatgag gcaggatttc 4681 tcacttgggg gtggggttgg gggattccag ggtgcctggg actggaagga ttttgtgccc 4741 taatcttggg ctcttttatg tagggtgggg cctggccagt ctcctgcctc aagggactgg 4801 aaacagctgt tactgtcata gagaaggctg ggggctgtgt attggagggg gaggcctagc 4861 cactcttgcc tcaatgggct tacagctccc ttttttgttt actattgata aacaatcttt 4921 tgaaattgct tttcacacta agaacaagat tcaaaagaag aggcaagaag gacaaaaaat 4981 caaaatctgg atctccttgc ctaggagctt agctgtttct actgtgaatt tataattttg 5041 agagcagtat ctgtttcctt tttctaaaaa aaaaaattaa gacaggttca ccagaataga 5101 gctcagttga aaggaggttt gccaacatag ggccttgcat ttgattccca gcactgcata 5161 agatggcaca gtggcattca cctatatccc cagcacctgg gaggtggagg ccctagaaca 5221 aggaggtcag gtcatcctcg actatatact tagtttaagg ccaacctggg ctgtttaaga 5281 aagaaaagaa aagaaaagaa aagaaa //
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