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PREDICTED: Xenopus tropicalis cyclin I (ccni), transcript variant X1, mRNA

NCBI Reference Sequence: XM_012959253.2

FASTA Graphics 

LOCUS       XM_012959253            3066 bp    mRNA    linear   VRT 18-DEC-2019
DEFINITION  PREDICTED: Xenopus tropicalis cyclin I (ccni), transcript variant
            X1, mRNA.
ACCESSION   XM_012959253
VERSION     XM_012959253.2
DBLINK      BioProject: PRJNA205740
KEYWORDS    RefSeq.
SOURCE      Xenopus tropicalis (tropical clawed frog)
  ORGANISM  Xenopus tropicalis
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae;
            Xenopus; Silurana.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_030677.2) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 18, 2019 this sequence version replaced XM_012959253.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI
            Annotation Status           :: Full annotation
            Annotation Name             :: Xenopus tropicalis Annotation
                                           Release 104
            Annotation Version          :: 104
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 8.3
            Annotation Method           :: Best-placed RefSeq; Gnomon
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3066
                     /organism="Xenopus tropicalis"
                     /mol_type="mRNA"
                     /strain="Nigerian"
                     /db_xref="taxon:8364"
                     /chromosome="1"
                     /sex="female"
                     /tissue_type="liver and blood"
                     /dev_stage="adult"
                     /note="F17 inbred"
     gene            1..3066
                     /gene="ccni"
                     /gene_synonym="ccni-a; ccni-b; cyc1; cyi"
                     /note="cyclin I; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 59 ESTs, 2 Proteins, and
                     95% coverage of the annotated genomic feature by RNAseq
                     alignments, including 17 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:448195"
                     /db_xref="Xenbase:XB-GENE-945654"
     CDS             255..1406
                     /gene="ccni"
                     /gene_synonym="ccni-a; ccni-b; cyc1; cyi"
                     /codon_start=1
                     /product="cyclin-I isoform X1"
                     /protein_id="XP_012814707.1"
                     /db_xref="GeneID:448195"
                     /db_xref="Xenbase:XB-GENE-945654"
                     /translation="MLRRLLLLPGRVARTEDKDWNIHLWRVWMGGPDLASLFLDVGIS
                     PEQRDEVILWLAELKYQFRVYPETHALAISILDRFLAAVKARPKYLRCIAISCFFLAA
                     KTIEEDERIPVLRVLTQGSSCGCSPAEVLRMERIILDKLNWDLHTATPLDFLHIFHAM
                     TLNASPELFDRIPELNPSQHVALLTRQLLQCMAFHQLLQFKGSMLALALLSLEMEKLL
                     PDWLAVTIKLLQLAQMDSAQLFYCREVAAHHLSLLQPPLPPNAVYIYSPLKRTLVSYN
                     RGAYIHPSTVKEPGFHPQGNCISGALIKGASVLYQSLAAPAVCKQASTKRKVEQMEVD
                     DFYDGIKRLYNEDSSADVVGMEIVACSSGLSRSEGSLSPCPQLQAVSVM"
ORIGIN      
        1 gtgtggcttt gtactttgtg ctcaaaactt gttgagcatt ttttttgcct tctgtgaact
       61 gaactgaagc acagcgccaa agtcccacag cgcaggagag gcgaaagaca ttgcagcaga
      121 tgccgccaga ggcagaggag cagccccagg atgtcggtgg ggcagattaa ccggaccccg
      181 ttcagtctcc agaataccaa gctggatctt ccccccccca tccttgtcac cgccacctgt
      241 gtcacccccc aggcatgctg cggcgactgt tgctgctgcc ggggagagtg gccaggaccg
      301 aggacaagga ctggaacatc catctgtgga gagtttggat gggtggcccg gatcttgcca
      361 gcctgttctt ggatgtaggt atttctccag aacagcggga tgaagtgatc ctatggctgg
      421 ctgaactgaa gtatcagttc cgtgtttacc cagaaacaca tgctctggcc atcagtattt
      481 tggatcgttt tttggctgca gtaaaggctc gtccaaaata cttaaggtgc attgcaataa
      541 gctgtttctt tcttgctgcc aaaaccattg aggaagacga gcggatcccg gtgctcagag
      601 tcctgaccca aggcagctcg tgtggctgct ctccagctga ggttctcaga atggagagga
      661 taattctaga taaacttaac tgggatcttc acacagctac gcctctggat tttcttcaca
      721 ttttccatgc catgactttg aatgccagcc ctgagttgtt tgacagaata cctgaactga
      781 acccatctca gcatgtagct ctcttgacga ggcaactttt gcaatgtatg gcatttcacc
      841 agctgctaca gtttaagggc tccatgttgg cactggcact ccttagtcta gaaatggaaa
      901 agctgcttcc tgattggctt gctgttacca taaaactgct ccaattggca cagatggata
      961 gtgctcagct gttttattgc cgggaagtag cagcacatca cctttctctt ctgcagcctc
     1021 ccttgccccc caatgctgta tacatctaca gtcccctcaa gcgtaccctg gtgtcctaca
     1081 acagaggagc ttatatccac ccttccactg taaaggaacc aggattccat ccacagggca
     1141 attgcatatc aggagctctg ataaagggag cgtctgtcct ctaccaaagt ctggcagctc
     1201 cagctgtctg caaacaggcc tccaccaaga ggaaggtaga gcagatggaa gtggatgact
     1261 tctatgatgg aatcaagagg ctatacaatg aagatagctc tgcagatgtt gtgggcatgg
     1321 agatagtggc atgtagtagt ggcctatcca ggtcagaggg cagtctgtcc ccatgcccac
     1381 aattacaagc tgtgtcagtc atgtaaagtc agcactttac ttggcagaag caagtaccag
     1441 accagattcc tttgactctg tgctggtgga gtaacttcca atatggacct ctccagcaat
     1501 agggttataa tgtcacacag gccatgcctt aacaggctac agtagagggc tacatctctg
     1561 cctgttttct catgctgcta aactaagctt catcactaaa aaaaaaaaaa aaaaaaaaaa
     1621 aaatactgaa attaaacaca tttgaagaaa aaaaaaatgc ccaaaaacag caaaaaaaaa
     1681 aaaaagtaga gaaattgttt aacattatag tgttgtcaat gtcattgttt tatgcttgta
     1741 caactactgt aagctgtgcc gcttagggcg aagacacaca gagctactag tagcagctac
     1801 ttgtcgtggc tactaaaatg gataatgctg atcatttact gataacagtc tctacgtgtg
     1861 ttttagcaga ggcaattctc agtattatct attgtctatg gcagggtatt ttctggcgtt
     1921 tagtagctgt gacaagtagc tgcttctatg tagctctgtg tgtcttcacc cttaaaccta
     1981 cccgtggagc tctatttaga tcatttccaa atatgtcctg cactgttatc atctctgctt
     2041 tttttcttgc taattgatct ccccccccct ttcctttaaa ggagaaggaa aggaaaagtc
     2101 acttgggggt gccaaaatgt taggcacccc caagtgactt gaattgcata ccttttaccc
     2161 cggggctggt gcccctgtag agagacggaa agaacagccc ggggtatctg cagccattca
     2221 ttcttcctgc tttgtgagca cgcacagtag agtgaaaagc cgaactttaa cagagaagtc
     2281 ggcttttcac tctactgttc atgcgcttat tgtgttagtc ttagcgaaac ggaggcggaa
     2341 ggaggaagcg catcgctcca ggtaccccgg gctggtgctg ttttctccta gcgattaaag
     2401 tcacttgggg gtgcttaaca ttttagcgcc cccaagtgac ttagcctttc cttctccttt
     2461 aagctggcca tacacgcacc gataatattg gaagaaacct cgataaaata tattgtcagt
     2521 tacaatgcca tatctaaata catgattttg cacaattttg ggctttcctg ttaactttat
     2581 tcaccgtctc tgtactaaga atattgctgg tgcttgtgaa atttgattat aattagtcat
     2641 agaaaattct attatagaat cttgcagtaa tgtcatggta agctgtcagt caatgactat
     2701 tacattcatg cgagttgaca tttaaacaca aagtttagcc gtgttctcac caaaaattac
     2761 aaatatctac ctattttgaa ttttaagcca ttgacaccat tacaataagt tatctaatag
     2821 caagctgaaa acaatagatt ctttttgttt atgggaaagt gttatcaact tttctcatta
     2881 actacataaa taatatgtta caagtaacta tctgttttta aagcatgtgt gttccttatt
     2941 gttttctttt ctgttgttat gatagccttc atttgaaatc ttagcacagt ctgtataagg
     3001 catggccaat ggaatcattg tccctttatc aagttattct ggttgcaata aacaattacc
     3061 caagta
//
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