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NCBI Reference Sequence: XM_009297030.3
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LOCUS XM_009297030 2515 bp mRNA linear VRT 08-SEP-2024 DEFINITION PREDICTED: Danio rerio coenzyme Q10A (coq10a), mRNA. ACCESSION XM_009297030 VERSION XM_009297030.3 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007134.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2024 this sequence version replaced XM_009297030.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_000002035.6-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/15/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2515 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="23" gene 1..2515 /gene="coq10a" /note="coenzyme Q10A; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 ESTs, 237 long SRA reads, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 132 samples with support for all annotated introns" /db_xref="GeneID:100002536" /db_xref="ZFIN:ZDB-GENE-090312-30" misc_feature 1 /gene="coq10a" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 309..1058 /gene="coq10a" /codon_start=1 /product="coenzyme Q-binding protein COQ10 homolog A, mitochondrial" /protein_id="XP_009295305.1" /db_xref="GeneID:100002536" /db_xref="ZFIN:ZDB-GENE-090312-30" /translation="MAVSGGARRIPMGVRTFSEFLEIATVGPCRSSSPYKYRERIQHW SIRHLSSCGILMTRYPRALCHSEVELTPTHHRRSFISLTNKRKEYSERRILGYSMQEM YEVVANVDDYKHFVPWCKKSQTIMKRAGHAKAQLEVGFPPVVERYTSMISHVRPHLVK AVCSDGKLFNHLETIWRFSPGIPGYPRTCTVDFSVSFEFRSLLHSQLATVFFDEVVKQ MVAAFERRAGKLYGPETRIPRELMFHEVHQT" polyA_site 2515 /gene="coq10a" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agaacagcga gtcctcccgc acaccggcag cttatgaaag cttcaccggt ttaacctcaa 61 tcggtagcag agcaatcgcc ggagaaaggg ctattgtttt actagatgtt aatctagaag 121 tcgaaatatg atatgtgcac tacactgatc aaacgcaacg caaggatttg accgctgaaa 181 aaaagcggcc gactcattta ttcacggagc ctaacgttcg agatgacagc gcgctcttgg 241 ttattgtcgt gttaatcgag atcttcgtta ttaattttaa gctagagtta ggttaagctg 301 tgttattgat ggccgtgtcg ggaggcgcgc ggaggatccc gatgggtgtg cggacattca 361 gcgagtttct ggaaatagcg actgtcggtc cgtgtcgctc cagcagcccg tataaataca 421 gagagagaat acagcactgg tccatcaggc acctgtcctc ctgcgggatc ttaatgactc 481 gctatccacg ggctctctgt cactctgaag ttgagttgac ccccactcat caccggcgat 541 ccttcatcag cctcaccaac aagagaaaag agtattcaga gaggagaata ttagggtact 601 cgatgcaaga gatgtatgaa gtggtggcca atgtggatga ctacaagcac tttgtaccgt 661 ggtgtaagaa atcccaaacc atcatgaaaa gggccggtca tgccaaagcc cagctggaag 721 tgggtttccc tcctgttgtt gaacgttaca cttcaatgat aagccatgtt cgtccacatc 781 tggtcaaagc ggtgtgttca gatggtaaac tcttcaatca tttagagaca atatggcggt 841 ttagtcctgg cattcctggc tatcctcgca catgcacagt tgacttctct gtgtcgtttg 901 agtttcgttc gctgctgcat tctcagttag cgacggtgtt cttcgacgag gtggtgaagc 961 agatggtggc cgcgtttgag cgacgagcag gcaagctgta cgggcccgag acgaggatac 1021 cacgagagct gatgtttcac gaggttcacc aaacgtgagg tgccccatta cactggactc 1081 gcctgcaact ggaactcaca aaactctcta gacggttatc acatcactag attatatcgg 1141 gatggtacaa tagataccat gtacttttag acaacattac agttccaagt attgcacctt 1201 aaagctattt tgtttttctt ttgtttgctt attgactgtg aatgaagaat aactgattta 1261 ttgcagctct gaacagtaaa gatgaggtgt agaattggag aaatcctctc gtttactagt 1321 tctgtctgac tatgggttcg ctggggccaa atctgatgaa tttactaagc taaaaggaat 1381 atttcaggtc aaatctgtca aacgctgttg atttccactg gaaataattt caatttgcac 1441 ctccgttttt aaaataataa cagcacaaac attgccctct tagttttaaa gctgaattat 1501 tttctgtggt aatcaacaca atgcaaaaca cacagattaa ccaggaatat tccttttaaa 1561 acaggtcttc tacaactata tctataaata aatatagtaa gaattcatat gcttgaattg 1621 aagcacgatg agcgacttga ctttcactgc actgagttta ttataatatt catctcaaga 1681 agtcggtgtg actccaaaca caactgtaaa tatactgaat atgagctata cagttaaagt 1741 ggcatcagat atttctccca gctaaatatt tatccttata gacaacaaca acaaaaactt 1801 ttgtttatag aagtgattta ttgtgatgaa ggtatattta gcatgctttt gctttcgtta 1861 gatgcattca tgcgaactca gggctttgga gaaatgaaat gtaagacttc tgcctgtttt 1921 tttttttttt ccctaatagt gatcccagtt tgtgcctgtt gatgtagacg tgccatttct 1981 gttttgtcgc tacgttaatg tctgttgaaa cactactgta ttcacttatt gtgatttctc 2041 aaaacgctac agttggaagc ctagcaagct ttttctttat ctgtttgttt ttattttatg 2101 agattttatt tttagccatt tcaatgcctt atccaagtgt tcatggcatt tataaatgac 2161 tccacatacc gttgtaattg tcgaatgcta atttatttgt gctgtatctc aacctcctgt 2221 ccgagagtct tccacagaaa aaaaaacacc tccttcattt ctaaaaaaaa acaaaaagat 2281 cttgttagat gtctgtttag tgaaaatgtt tgcttgaaaa actgtgaatc agaaccaaag 2341 agatgatcag tgcttcagaa gatccacaag agcacagttt taggaacaac gtctcgctga 2401 aatgaatgtt atctgtaaac ctttattctc tgtcagcagg cctgtcatca gtgttataac 2461 cttgcacaag catttctttt aatttgaaaa cctataaatt tatttaccaa caaaa //
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