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PREDICTED: Danio rerio coenzyme Q10A (coq10a), mRNA

NCBI Reference Sequence: XM_009297030.3

FASTA Graphics 

LOCUS       XM_009297030            2515 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio coenzyme Q10A (coq10a), mRNA.
ACCESSION   XM_009297030
VERSION     XM_009297030.3
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007134.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2024 this sequence version replaced XM_009297030.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2515
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="23"
     gene            1..2515
                     /gene="coq10a"
                     /note="coenzyme Q10A; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 7 ESTs, 237 long SRA
                     reads, 16 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 132
                     samples with support for all annotated introns"
                     /db_xref="GeneID:100002536"
                     /db_xref="ZFIN:ZDB-GENE-090312-30"
     misc_feature    1
                     /gene="coq10a"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             309..1058
                     /gene="coq10a"
                     /codon_start=1
                     /product="coenzyme Q-binding protein COQ10 homolog A,
                     mitochondrial"
                     /protein_id="XP_009295305.1"
                     /db_xref="GeneID:100002536"
                     /db_xref="ZFIN:ZDB-GENE-090312-30"
                     /translation="MAVSGGARRIPMGVRTFSEFLEIATVGPCRSSSPYKYRERIQHW
                     SIRHLSSCGILMTRYPRALCHSEVELTPTHHRRSFISLTNKRKEYSERRILGYSMQEM
                     YEVVANVDDYKHFVPWCKKSQTIMKRAGHAKAQLEVGFPPVVERYTSMISHVRPHLVK
                     AVCSDGKLFNHLETIWRFSPGIPGYPRTCTVDFSVSFEFRSLLHSQLATVFFDEVVKQ
                     MVAAFERRAGKLYGPETRIPRELMFHEVHQT"
     polyA_site      2515
                     /gene="coq10a"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 agaacagcga gtcctcccgc acaccggcag cttatgaaag cttcaccggt ttaacctcaa
       61 tcggtagcag agcaatcgcc ggagaaaggg ctattgtttt actagatgtt aatctagaag
      121 tcgaaatatg atatgtgcac tacactgatc aaacgcaacg caaggatttg accgctgaaa
      181 aaaagcggcc gactcattta ttcacggagc ctaacgttcg agatgacagc gcgctcttgg
      241 ttattgtcgt gttaatcgag atcttcgtta ttaattttaa gctagagtta ggttaagctg
      301 tgttattgat ggccgtgtcg ggaggcgcgc ggaggatccc gatgggtgtg cggacattca
      361 gcgagtttct ggaaatagcg actgtcggtc cgtgtcgctc cagcagcccg tataaataca
      421 gagagagaat acagcactgg tccatcaggc acctgtcctc ctgcgggatc ttaatgactc
      481 gctatccacg ggctctctgt cactctgaag ttgagttgac ccccactcat caccggcgat
      541 ccttcatcag cctcaccaac aagagaaaag agtattcaga gaggagaata ttagggtact
      601 cgatgcaaga gatgtatgaa gtggtggcca atgtggatga ctacaagcac tttgtaccgt
      661 ggtgtaagaa atcccaaacc atcatgaaaa gggccggtca tgccaaagcc cagctggaag
      721 tgggtttccc tcctgttgtt gaacgttaca cttcaatgat aagccatgtt cgtccacatc
      781 tggtcaaagc ggtgtgttca gatggtaaac tcttcaatca tttagagaca atatggcggt
      841 ttagtcctgg cattcctggc tatcctcgca catgcacagt tgacttctct gtgtcgtttg
      901 agtttcgttc gctgctgcat tctcagttag cgacggtgtt cttcgacgag gtggtgaagc
      961 agatggtggc cgcgtttgag cgacgagcag gcaagctgta cgggcccgag acgaggatac
     1021 cacgagagct gatgtttcac gaggttcacc aaacgtgagg tgccccatta cactggactc
     1081 gcctgcaact ggaactcaca aaactctcta gacggttatc acatcactag attatatcgg
     1141 gatggtacaa tagataccat gtacttttag acaacattac agttccaagt attgcacctt
     1201 aaagctattt tgtttttctt ttgtttgctt attgactgtg aatgaagaat aactgattta
     1261 ttgcagctct gaacagtaaa gatgaggtgt agaattggag aaatcctctc gtttactagt
     1321 tctgtctgac tatgggttcg ctggggccaa atctgatgaa tttactaagc taaaaggaat
     1381 atttcaggtc aaatctgtca aacgctgttg atttccactg gaaataattt caatttgcac
     1441 ctccgttttt aaaataataa cagcacaaac attgccctct tagttttaaa gctgaattat
     1501 tttctgtggt aatcaacaca atgcaaaaca cacagattaa ccaggaatat tccttttaaa
     1561 acaggtcttc tacaactata tctataaata aatatagtaa gaattcatat gcttgaattg
     1621 aagcacgatg agcgacttga ctttcactgc actgagttta ttataatatt catctcaaga
     1681 agtcggtgtg actccaaaca caactgtaaa tatactgaat atgagctata cagttaaagt
     1741 ggcatcagat atttctccca gctaaatatt tatccttata gacaacaaca acaaaaactt
     1801 ttgtttatag aagtgattta ttgtgatgaa ggtatattta gcatgctttt gctttcgtta
     1861 gatgcattca tgcgaactca gggctttgga gaaatgaaat gtaagacttc tgcctgtttt
     1921 tttttttttt ccctaatagt gatcccagtt tgtgcctgtt gatgtagacg tgccatttct
     1981 gttttgtcgc tacgttaatg tctgttgaaa cactactgta ttcacttatt gtgatttctc
     2041 aaaacgctac agttggaagc ctagcaagct ttttctttat ctgtttgttt ttattttatg
     2101 agattttatt tttagccatt tcaatgcctt atccaagtgt tcatggcatt tataaatgac
     2161 tccacatacc gttgtaattg tcgaatgcta atttatttgt gctgtatctc aacctcctgt
     2221 ccgagagtct tccacagaaa aaaaaacacc tccttcattt ctaaaaaaaa acaaaaagat
     2281 cttgttagat gtctgtttag tgaaaatgtt tgcttgaaaa actgtgaatc agaaccaaag
     2341 agatgatcag tgcttcagaa gatccacaag agcacagttt taggaacaac gtctcgctga
     2401 aatgaatgtt atctgtaaac ctttattctc tgtcagcagg cctgtcatca gtgttataac
     2461 cttgcacaag catttctttt aatttgaaaa cctataaatt tatttaccaa caaaa
//
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Reference sequence information

  • RefSeq protein product
    See the reference protein sequence for coenzyme Q-binding protein COQ10 homolog A, mitochondrial (XP_009295305.1).

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