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NCBI Reference Sequence: XM_008770247.4
FASTA Graphics
LOCUS XM_008770247 6802 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus actin filament associated protein 1 (Afap1), transcript variant X2, mRNA. ACCESSION XM_008770247 VERSION XM_008770247.4 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086032) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XM_008770247.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6802 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="14" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..6802 /gene="Afap1" /gene_synonym="Afap" /note="actin filament associated protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 182 long SRA reads, 9 Proteins" /db_xref="GeneID:140935" /db_xref="RGD:619959" CDS 252..2714 /gene="Afap1" /gene_synonym="Afap" /codon_start=1 /product="actin filament-associated protein 1 isoform X2" /protein_id="XP_008768469.1" /db_xref="GeneID:140935" /db_xref="RGD:619959" /translation="MEELIVELRLFLELLDHEYLTSTVREKKAVLTNILLRMQSSKGF EVKDHAQKAETNNLPAPPQMPLPEIPQPWLPPDSGPPPLPTSSLPEGYYEEAVPLSPG KAPEYITSNYDSEAMSSSYESYDEEEEDGKGKKTRHQWPSEEASMDLVKDAKICAFLL RKKRFGQWTKLLCVIKDTKLLCYKSSKDQQPQMELPLQGCSITYIPRDSKKKKHELKI TQQGTDPLVLAVQSKEQAEQWLKVIKEAYSGCSGPVDPECSPPPSASVPVNKAELEKK LSSERPSSDGEGVVENGVTTCNGKEQAKRKKPSKSEAKGTVSKVTGKKITKIIGLGKK KPSTDEQTSSAEEDVPTCGYLNVLSNSRWRERWCRVKDSKLILHKDRADLKTHIVSIP LRGCEVIPGLDSKHPLTFRLLRNGQEVAVLEASSSEDMGRWIGILLAETGSSTDPGAL HYDYIDVEMSANVIQTAKQTFCFMNRRAVSTSPYLGSLSNGYAHPSGTALHYDDVPCV NGSWDMDGGFPGCGSRGPVEEVLYDNAGLYDNLPSPTIFARSSPADRRASRPPTDRLS SNHYKSPTSCSPPCSPSVTNTSSVGRASLGLHSQLKNKKPPASSNGLPVKGKAPSSQQ KKVESAGGVKRTASNAEQYKYGKNRVEADAKRLQSKEEELLKRKEALRNRLAQLRKER KDLRAAIEVNAGRKTQVALEDKLKRLEEECKQREAERVSLELELTEVKESLKKALAGG VTLGLAIEPKSGTSSPQSPVFRHRTLENSPISSCDTSDAEGPLPVNSAAVLKKSQPSS SSSPCRGHVLQKAKEWELKNGT" polyA_site 6802 /gene="Afap1" /gene_synonym="Afap" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cctcaccatt ggctagaggg cgggtccttt ctgcccaggg ggcggggcta tggagacagg 61 cggggcctat cgcgcctgcg cagagtcctc cagccgcagc tcgcaccagc ggtgtctggg 121 ctccgggtcc agactgagat cgctgagctg cgcagggccc cgccccgggc tccattgttg 181 aggcagcgga cgctccgcgg tctgcgctcc tttcggccgt cctgcgctca cgagccactg 241 aatcctgagc aatggaagaa ttaatagttg aactccgcct gttcctggag ctcctggacc 301 atgagtacct cacgtcaact gtcagagaga aaaaggcagt gcttaccaac atcctgcttc 361 gaatgcagtc atccaagggc tttgaagtga aggaccatgc acagaaggca gagaccaaca 421 acctcccggc accaccccag atgcctctgc cagagatccc tcagccatgg ctgcctcctg 481 acagtgggcc tccgccgtta ccgacatcct ctctcccaga gggttactat gaggaagctg 541 tgcccctgag tcctggaaaa gctccagagt acatcacctc aaattatgac tctgaggcca 601 tgagcagttc ctatgagtca tatgatgaag aggaagagga tgggaagggg aagaaaacgc 661 ggcatcagtg gccatcagag gaggcctcta tggacctggt gaaagatgcc aagatctgcg 721 ccttcctgtt gcgtaagaaa cgcttcggcc agtggaccaa gctgctctgc gtcatcaaag 781 acaccaagct gctgtgctac aaaagttcca aggaccagca gcctcagatg gagctgcccc 841 tgcagggctg cagcatcacg tacatcccga gagacagcaa gaagaagaaa cacgagctga 901 aaatcaccca gcaaggcaca gaccctctgg tcctcgccgt ccagagcaag gagcaggccg 961 agcagtggct gaaggtaatc aaagaggcct acagtggctg cagtgggccc gtggatccag 1021 agtgttctcc accacccagc gccagtgtcc ctgtgaacaa ggcagaactg gagaagaaat 1081 tgtcttcaga gaggcccagc tctgatggag aaggtgttgt agaaaacgga gtcaccacgt 1141 gtaatggaaa agaacaagca aagaggaaga aaccctccaa gtcagaggcc aaggggactg 1201 tgtccaaggt cactgggaag aaaattacca agatcatcgg tctgggaaag aagaagccat 1261 ccacagatga gcagacgtca tcagcagagg aagatgtgcc cacctgtggc tacctaaatg 1321 tgctctctaa cagtcgctgg cgggagcgct ggtgcagagt gaaggacagc aagctcattc 1381 tccacaagga ccgggctgac ctgaagaccc acatcgtctc catccctctc cgcggctgcg 1441 aggtgattcc gggcttggat tctaagcacc cattgacctt ccggctgctt cgaaatggac 1501 aggaggtggc tgtcctagag gcatcatctt ctgaagacat gggcagatgg attggcatct 1561 tactggctga gacagggtcc tcaacggacc caggagccct acactatgac tacatagatg 1621 tggagatgtc agcaaatgtc atccagacgg ctaaacagac cttctgcttt atgaacagga 1681 gggcagtgtc cactagcccg tacctgggga gcctctccaa tggctatgcc catcccagtg 1741 ggacagcact acactatgac gacgtccctt gtgtcaacgg ctcgtgggac atggatggcg 1801 gctttcctgg ctgtgggagc agaggcccag tggaagaggt gctttatgat aacgcaggcc 1861 tctacgataa cttgccatcg ccgacaatct ttgctcgctc ctctcctgct gaccggaggg 1921 catctcggcc acccactgac aggctatcct ctaaccacta caaatccccc acctcctgca 1981 gcccaccctg ctccccatct gtcactaaca cctcttctgt ggggagggcg tctctcgggc 2041 tgcactccca gttgaagaac aaaaaacctc cagcgtcatc taatgggctt cctgtgaagg 2101 gaaaggctcc cagcagccag caaaaaaagg tggaatctgc ggggggcgtg aagcgcacag 2161 catcaaatgc cgagcagtac aaatatggta agaaccgggt agaagcagat gccaagcggt 2221 tacagtccaa agaggaagag ctactgaaga gaaaagaggc cctgcggaac aggctggcac 2281 agctccggaa agagaggaag gacctgaggg ctgccatcga agtgaatgca ggcaggaaga 2341 cccaggtggc cctggaggac aagttgaaga ggttggagga agagtgcaag cagagggagg 2401 cagagcgggt cagcctggag ctggagctga cggaggtcaa ggagagcctg aagaaggcct 2461 tggcaggtgg cgtcactcta ggactggcta tcgaacccaa gtcagggaca tcaagcccac 2521 agtctccagt gtttcggcat cggactctgg aaaactcccc catctccagc tgtgatacaa 2581 gcgatgctga ggggcctttg cctgtgaaca gtgcagccgt cctgaagaag agccagccgt 2641 cctccagcag ctccccttgc cgtgggcacg tgctgcagaa ggccaaggag tgggagctga 2701 agaatggaac atagagggag cccagccaca cccagagact gtgtactgcc accagccttg 2761 catgtgacac gtgcgcctcc caaagtggcc cgagcatgac tgcagaagtt tagaccgagt 2821 ctgacgctga cccttggctg gcttgcgtgc acgctttcta ctgtacgacg gtgcccttta 2881 ggaaagttta ctttaaaact ttggtgtcca aatttacttg ttaagaagca gaaatgaaag 2941 ggattgacaa gcggttttga agcaccctct agcagatggg gtggttctga ggacctcagc 3001 tcagtcccaa cctgcagccc acggaccgtg cgcccctgtg agacggggtg ggccaagcct 3061 ttcccctgtg tggtcagagc tgcatacctc accctgtttg caagagggtc ctactctgca 3121 gcagcagcat gagctcctgt gtctctgcat acacacctct ccccaccccc tcccccttcc 3181 cctccccctc cccttccctt cctgtcccct gtcactggag gtgaagccat gaggaatagt 3241 gctgtgaagc gactttaaga ttcagttttg gtattggaca agccttttgt caccaggata 3301 gagatgttgt cattcttttt accagggttt ttcatgtttg ttttaaagaa aatgcccctg 3361 ccctgcccct tttcatcatg tgctgtgctt ggaccttaag gacttttcag agaccctgtt 3421 tccttcccac tgtatgatgt actttgagag gctgcacaga gctttcagtc cttggctagc 3481 atgtacccct ttctcctgac ctgagacccc agcttcccag gcaggggctc ctgagcccag 3541 gaagcacacc ggccaccatc tgcctatggg tgtaacagag caggttctag aacctgtagt 3601 ttaacctggc ccatctgtga acaaagacat tccttccaga gctccttcct caagtttaca 3661 ctcgaagctg tagatcaggg tgcactccca tgccgaggtt cggattgcat gggcccttcc 3721 cactctcccg tctgcctctg ggcatttcat aggatcgttc agctgctcgg gatgcatcgt 3781 ctgcaggtca tgggggctag cctctaccct aggagtttga gattcaaact ggctttggga 3841 gcttccagag tacagtgcga acctctccac catggggaga tgcaggcagt gacctggaca 3901 ttaggcatct ctgcagactt gtgcagggcc agttatacac agtgagaacc tagtgatgcc 3961 tttccatcgc agtccagaat gtccttagca cacacgggag gaaagtctcc caggctccct 4021 gcagaggggc cttctctggg cagccttcat atccaggatt ggtgctctgg gcttgagccc 4081 tgcagcagct gccttggagt cacaaaagag cagcaaggtg gttaccgggg tacagggaca 4141 ggaaagctac tcagctgaag gtctgtccca ggctagccca ctgtaagacc cttgccaagc 4201 tgtgcaatgg tgcttctctc tagtgccttc ctccaaaggg cagttctgat tcttcacagc 4261 agcatctgtg tgggctggtg tctgccagga atctgtgtag aaagaccagg aggaggcata 4321 cagcctccac acacaccagc ctactcacgg agctgcaact gggggagccc cttgggtcat 4381 cgcagggagc tgtgaccatt ccatgctctg aaagggaaga gaatttaatg tgccatagac 4441 ttctgctgcc tcgggtctca gagcagtgct tttggtcact ccaataacag ccttctttgc 4501 caggaaacct ggtccaggct ttgactgtta ccaaaacaag gagaaaatgc ccaacttgac 4561 agccagtcct ggccagcata gagggacata gtgaagtatc gtgtccagca gataaacctc 4621 agatgagttt gtcctgatga aaacacagca gcctccaggc tcctggcatt cttagtttgt 4681 gctgagaaac ccaggcctgt aatcctttca ctgtgccgga tgctacaaat tccttagaac 4741 catataaagt aggtcctgga gaagttacgg ctcccaacac agggctccac tgtcctgtgg 4801 tcccattaat gttctgagat ttggtcagaa agctagttca aagcatttgt ttcaaaataa 4861 gttatttatt tgtatatgtt caataaatag agttttaatt tatatgtaca tattgggaca 4921 cccatgatcc tgtcaggatt ctcagtgctc tcattctatg actctcccaa agccaccggc 4981 atgaccccag ccatcgatgg caggtttgct ttgtgtggat ccaggtaggc agagggctga 5041 accagcccct ttctgtgagc aaccaggtcc tctgcaccat gggagatgct ccacctcttg 5101 gggcctctct ttgaggccac agagtttccc tgggtctact tttgctacaa cttggcaaga 5161 tgtcatcagc tttcacaaac ccctactttt atgtccgttt tctaactaac catttgcatg 5221 caaatatcat gctggcccgg ggatttgctc tggtccctgg cctgggcatg tgggtgcaac 5281 cctcagtgtc acacaagctc atgtaccagt gttcttgcaa gggtgagtgt gggtcaaaca 5341 ggtcatccca ggtgccagag tgacctgtca ggacggtatg gacccacttc acacagaatc 5401 ttccagagtg cttgctgctc ccctgcctca gcgtcagtgc ccggtcgctt ccccgtgcat 5461 gccttggtcc tgcctcacca tcctgtccac ttcatctgtc cactgctcca atttcccttt 5521 ggctgtttct gtgtcagctc gcccatgcca atgggacttt tagaaaatcg gctttggaaa 5581 gcaatgtccc aggccctgag gacatcgagg aaggcttcca atatgtgggg actgcagtcc 5641 cccaggtaga attcacacac aggcagcagc tggactgtgt gtccctggcc tctcctccca 5701 aaggcaaggg acaagccttc cctgtcgttg acctctgccc tgtgctctgg ggaatacttg 5761 agccaagtta agacattcac acccaccctc accagcaagc aggacacctt caaggtccat 5821 tctatgggtg gggcaacatc aaaatgattg atctttctgg gttttttttt ctaaagtaat 5881 tttgaaatag agacatttca aatccatgac atagttttta tagaagcaac tgaatgtctg 5941 ggtcttgttc ccactgactt actactaatc acgccagagg gctgggtttc tactgtgaac 6001 taaactgaaa ctaaactccc tcactccccg tgccatcctc acacagctca gccccaggga 6061 gagcggaagc agcttggcca tgtcactggc gtgcaaagcc ctcccctcag ttttgaggaa 6121 caccctttgc cagtaggtgg ggatatacca ccatgatctt tggaaacctg ggcttcctgt 6181 acaccagatt ggattgtcct ttcaaaatgg tgtctttagt tcataattct tagggaccaa 6241 aggtgttttt aataggataa tgttttaatt gatttctaac aaaggtttac tctacatttt 6301 aataccagtt tttttacatt ctagatattc caaatcaatt gctcgtggct ctaagttgta 6361 aaatgttttc acgttatgaa tgtaattatt tccttaatgt atttttaaaa aaaaactaaa 6421 atcatattta aaataacctt ggaaagacaa caggcgaagg aaagagaaag ttttttttta 6481 attaactatg ttggtagccc atttgaaatg actgtaaata tattttgatt gtgtagctca 6541 atgtatttaa ttcagaaagt aaaaattttt tatgtaaaga gacttgcaat gaaaaatcct 6601 agttttcagt ccatgcccct atcttgtagt cactccctcc caacttttct cctctacaaa 6661 ctgatttttt ttctactgtt gtaaccgtgt acccatcgac tggcgcccat tggcggaact 6721 tgtttgtgta ttaataaaac tgtgctatgt agtccggcct tgtgtcctcc tgacagtggc 6781 tcatggtgca gaagaagttg tt //
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