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PREDICTED: Rattus norvegicus actin filament associated protein 1 (Afap1), transcript variant X2, mRNA

NCBI Reference Sequence: XM_008770247.4

FASTA Graphics 

LOCUS       XM_008770247            6802 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus actin filament associated protein 1
            (Afap1), transcript variant X2, mRNA.
ACCESSION   XM_008770247
VERSION     XM_008770247.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086032) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_008770247.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6802
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..6802
                     /gene="Afap1"
                     /gene_synonym="Afap"
                     /note="actin filament associated protein 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 ESTs, 182 long SRA reads, 9 Proteins"
                     /db_xref="GeneID:140935"
                     /db_xref="RGD:619959"
     CDS             252..2714
                     /gene="Afap1"
                     /gene_synonym="Afap"
                     /codon_start=1
                     /product="actin filament-associated protein 1 isoform X2"
                     /protein_id="XP_008768469.1"
                     /db_xref="GeneID:140935"
                     /db_xref="RGD:619959"
                     /translation="MEELIVELRLFLELLDHEYLTSTVREKKAVLTNILLRMQSSKGF
                     EVKDHAQKAETNNLPAPPQMPLPEIPQPWLPPDSGPPPLPTSSLPEGYYEEAVPLSPG
                     KAPEYITSNYDSEAMSSSYESYDEEEEDGKGKKTRHQWPSEEASMDLVKDAKICAFLL
                     RKKRFGQWTKLLCVIKDTKLLCYKSSKDQQPQMELPLQGCSITYIPRDSKKKKHELKI
                     TQQGTDPLVLAVQSKEQAEQWLKVIKEAYSGCSGPVDPECSPPPSASVPVNKAELEKK
                     LSSERPSSDGEGVVENGVTTCNGKEQAKRKKPSKSEAKGTVSKVTGKKITKIIGLGKK
                     KPSTDEQTSSAEEDVPTCGYLNVLSNSRWRERWCRVKDSKLILHKDRADLKTHIVSIP
                     LRGCEVIPGLDSKHPLTFRLLRNGQEVAVLEASSSEDMGRWIGILLAETGSSTDPGAL
                     HYDYIDVEMSANVIQTAKQTFCFMNRRAVSTSPYLGSLSNGYAHPSGTALHYDDVPCV
                     NGSWDMDGGFPGCGSRGPVEEVLYDNAGLYDNLPSPTIFARSSPADRRASRPPTDRLS
                     SNHYKSPTSCSPPCSPSVTNTSSVGRASLGLHSQLKNKKPPASSNGLPVKGKAPSSQQ
                     KKVESAGGVKRTASNAEQYKYGKNRVEADAKRLQSKEEELLKRKEALRNRLAQLRKER
                     KDLRAAIEVNAGRKTQVALEDKLKRLEEECKQREAERVSLELELTEVKESLKKALAGG
                     VTLGLAIEPKSGTSSPQSPVFRHRTLENSPISSCDTSDAEGPLPVNSAAVLKKSQPSS
                     SSSPCRGHVLQKAKEWELKNGT"
     polyA_site      6802
                     /gene="Afap1"
                     /gene_synonym="Afap"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cctcaccatt ggctagaggg cgggtccttt ctgcccaggg ggcggggcta tggagacagg
       61 cggggcctat cgcgcctgcg cagagtcctc cagccgcagc tcgcaccagc ggtgtctggg
      121 ctccgggtcc agactgagat cgctgagctg cgcagggccc cgccccgggc tccattgttg
      181 aggcagcgga cgctccgcgg tctgcgctcc tttcggccgt cctgcgctca cgagccactg
      241 aatcctgagc aatggaagaa ttaatagttg aactccgcct gttcctggag ctcctggacc
      301 atgagtacct cacgtcaact gtcagagaga aaaaggcagt gcttaccaac atcctgcttc
      361 gaatgcagtc atccaagggc tttgaagtga aggaccatgc acagaaggca gagaccaaca
      421 acctcccggc accaccccag atgcctctgc cagagatccc tcagccatgg ctgcctcctg
      481 acagtgggcc tccgccgtta ccgacatcct ctctcccaga gggttactat gaggaagctg
      541 tgcccctgag tcctggaaaa gctccagagt acatcacctc aaattatgac tctgaggcca
      601 tgagcagttc ctatgagtca tatgatgaag aggaagagga tgggaagggg aagaaaacgc
      661 ggcatcagtg gccatcagag gaggcctcta tggacctggt gaaagatgcc aagatctgcg
      721 ccttcctgtt gcgtaagaaa cgcttcggcc agtggaccaa gctgctctgc gtcatcaaag
      781 acaccaagct gctgtgctac aaaagttcca aggaccagca gcctcagatg gagctgcccc
      841 tgcagggctg cagcatcacg tacatcccga gagacagcaa gaagaagaaa cacgagctga
      901 aaatcaccca gcaaggcaca gaccctctgg tcctcgccgt ccagagcaag gagcaggccg
      961 agcagtggct gaaggtaatc aaagaggcct acagtggctg cagtgggccc gtggatccag
     1021 agtgttctcc accacccagc gccagtgtcc ctgtgaacaa ggcagaactg gagaagaaat
     1081 tgtcttcaga gaggcccagc tctgatggag aaggtgttgt agaaaacgga gtcaccacgt
     1141 gtaatggaaa agaacaagca aagaggaaga aaccctccaa gtcagaggcc aaggggactg
     1201 tgtccaaggt cactgggaag aaaattacca agatcatcgg tctgggaaag aagaagccat
     1261 ccacagatga gcagacgtca tcagcagagg aagatgtgcc cacctgtggc tacctaaatg
     1321 tgctctctaa cagtcgctgg cgggagcgct ggtgcagagt gaaggacagc aagctcattc
     1381 tccacaagga ccgggctgac ctgaagaccc acatcgtctc catccctctc cgcggctgcg
     1441 aggtgattcc gggcttggat tctaagcacc cattgacctt ccggctgctt cgaaatggac
     1501 aggaggtggc tgtcctagag gcatcatctt ctgaagacat gggcagatgg attggcatct
     1561 tactggctga gacagggtcc tcaacggacc caggagccct acactatgac tacatagatg
     1621 tggagatgtc agcaaatgtc atccagacgg ctaaacagac cttctgcttt atgaacagga
     1681 gggcagtgtc cactagcccg tacctgggga gcctctccaa tggctatgcc catcccagtg
     1741 ggacagcact acactatgac gacgtccctt gtgtcaacgg ctcgtgggac atggatggcg
     1801 gctttcctgg ctgtgggagc agaggcccag tggaagaggt gctttatgat aacgcaggcc
     1861 tctacgataa cttgccatcg ccgacaatct ttgctcgctc ctctcctgct gaccggaggg
     1921 catctcggcc acccactgac aggctatcct ctaaccacta caaatccccc acctcctgca
     1981 gcccaccctg ctccccatct gtcactaaca cctcttctgt ggggagggcg tctctcgggc
     2041 tgcactccca gttgaagaac aaaaaacctc cagcgtcatc taatgggctt cctgtgaagg
     2101 gaaaggctcc cagcagccag caaaaaaagg tggaatctgc ggggggcgtg aagcgcacag
     2161 catcaaatgc cgagcagtac aaatatggta agaaccgggt agaagcagat gccaagcggt
     2221 tacagtccaa agaggaagag ctactgaaga gaaaagaggc cctgcggaac aggctggcac
     2281 agctccggaa agagaggaag gacctgaggg ctgccatcga agtgaatgca ggcaggaaga
     2341 cccaggtggc cctggaggac aagttgaaga ggttggagga agagtgcaag cagagggagg
     2401 cagagcgggt cagcctggag ctggagctga cggaggtcaa ggagagcctg aagaaggcct
     2461 tggcaggtgg cgtcactcta ggactggcta tcgaacccaa gtcagggaca tcaagcccac
     2521 agtctccagt gtttcggcat cggactctgg aaaactcccc catctccagc tgtgatacaa
     2581 gcgatgctga ggggcctttg cctgtgaaca gtgcagccgt cctgaagaag agccagccgt
     2641 cctccagcag ctccccttgc cgtgggcacg tgctgcagaa ggccaaggag tgggagctga
     2701 agaatggaac atagagggag cccagccaca cccagagact gtgtactgcc accagccttg
     2761 catgtgacac gtgcgcctcc caaagtggcc cgagcatgac tgcagaagtt tagaccgagt
     2821 ctgacgctga cccttggctg gcttgcgtgc acgctttcta ctgtacgacg gtgcccttta
     2881 ggaaagttta ctttaaaact ttggtgtcca aatttacttg ttaagaagca gaaatgaaag
     2941 ggattgacaa gcggttttga agcaccctct agcagatggg gtggttctga ggacctcagc
     3001 tcagtcccaa cctgcagccc acggaccgtg cgcccctgtg agacggggtg ggccaagcct
     3061 ttcccctgtg tggtcagagc tgcatacctc accctgtttg caagagggtc ctactctgca
     3121 gcagcagcat gagctcctgt gtctctgcat acacacctct ccccaccccc tcccccttcc
     3181 cctccccctc cccttccctt cctgtcccct gtcactggag gtgaagccat gaggaatagt
     3241 gctgtgaagc gactttaaga ttcagttttg gtattggaca agccttttgt caccaggata
     3301 gagatgttgt cattcttttt accagggttt ttcatgtttg ttttaaagaa aatgcccctg
     3361 ccctgcccct tttcatcatg tgctgtgctt ggaccttaag gacttttcag agaccctgtt
     3421 tccttcccac tgtatgatgt actttgagag gctgcacaga gctttcagtc cttggctagc
     3481 atgtacccct ttctcctgac ctgagacccc agcttcccag gcaggggctc ctgagcccag
     3541 gaagcacacc ggccaccatc tgcctatggg tgtaacagag caggttctag aacctgtagt
     3601 ttaacctggc ccatctgtga acaaagacat tccttccaga gctccttcct caagtttaca
     3661 ctcgaagctg tagatcaggg tgcactccca tgccgaggtt cggattgcat gggcccttcc
     3721 cactctcccg tctgcctctg ggcatttcat aggatcgttc agctgctcgg gatgcatcgt
     3781 ctgcaggtca tgggggctag cctctaccct aggagtttga gattcaaact ggctttggga
     3841 gcttccagag tacagtgcga acctctccac catggggaga tgcaggcagt gacctggaca
     3901 ttaggcatct ctgcagactt gtgcagggcc agttatacac agtgagaacc tagtgatgcc
     3961 tttccatcgc agtccagaat gtccttagca cacacgggag gaaagtctcc caggctccct
     4021 gcagaggggc cttctctggg cagccttcat atccaggatt ggtgctctgg gcttgagccc
     4081 tgcagcagct gccttggagt cacaaaagag cagcaaggtg gttaccgggg tacagggaca
     4141 ggaaagctac tcagctgaag gtctgtccca ggctagccca ctgtaagacc cttgccaagc
     4201 tgtgcaatgg tgcttctctc tagtgccttc ctccaaaggg cagttctgat tcttcacagc
     4261 agcatctgtg tgggctggtg tctgccagga atctgtgtag aaagaccagg aggaggcata
     4321 cagcctccac acacaccagc ctactcacgg agctgcaact gggggagccc cttgggtcat
     4381 cgcagggagc tgtgaccatt ccatgctctg aaagggaaga gaatttaatg tgccatagac
     4441 ttctgctgcc tcgggtctca gagcagtgct tttggtcact ccaataacag ccttctttgc
     4501 caggaaacct ggtccaggct ttgactgtta ccaaaacaag gagaaaatgc ccaacttgac
     4561 agccagtcct ggccagcata gagggacata gtgaagtatc gtgtccagca gataaacctc
     4621 agatgagttt gtcctgatga aaacacagca gcctccaggc tcctggcatt cttagtttgt
     4681 gctgagaaac ccaggcctgt aatcctttca ctgtgccgga tgctacaaat tccttagaac
     4741 catataaagt aggtcctgga gaagttacgg ctcccaacac agggctccac tgtcctgtgg
     4801 tcccattaat gttctgagat ttggtcagaa agctagttca aagcatttgt ttcaaaataa
     4861 gttatttatt tgtatatgtt caataaatag agttttaatt tatatgtaca tattgggaca
     4921 cccatgatcc tgtcaggatt ctcagtgctc tcattctatg actctcccaa agccaccggc
     4981 atgaccccag ccatcgatgg caggtttgct ttgtgtggat ccaggtaggc agagggctga
     5041 accagcccct ttctgtgagc aaccaggtcc tctgcaccat gggagatgct ccacctcttg
     5101 gggcctctct ttgaggccac agagtttccc tgggtctact tttgctacaa cttggcaaga
     5161 tgtcatcagc tttcacaaac ccctactttt atgtccgttt tctaactaac catttgcatg
     5221 caaatatcat gctggcccgg ggatttgctc tggtccctgg cctgggcatg tgggtgcaac
     5281 cctcagtgtc acacaagctc atgtaccagt gttcttgcaa gggtgagtgt gggtcaaaca
     5341 ggtcatccca ggtgccagag tgacctgtca ggacggtatg gacccacttc acacagaatc
     5401 ttccagagtg cttgctgctc ccctgcctca gcgtcagtgc ccggtcgctt ccccgtgcat
     5461 gccttggtcc tgcctcacca tcctgtccac ttcatctgtc cactgctcca atttcccttt
     5521 ggctgtttct gtgtcagctc gcccatgcca atgggacttt tagaaaatcg gctttggaaa
     5581 gcaatgtccc aggccctgag gacatcgagg aaggcttcca atatgtgggg actgcagtcc
     5641 cccaggtaga attcacacac aggcagcagc tggactgtgt gtccctggcc tctcctccca
     5701 aaggcaaggg acaagccttc cctgtcgttg acctctgccc tgtgctctgg ggaatacttg
     5761 agccaagtta agacattcac acccaccctc accagcaagc aggacacctt caaggtccat
     5821 tctatgggtg gggcaacatc aaaatgattg atctttctgg gttttttttt ctaaagtaat
     5881 tttgaaatag agacatttca aatccatgac atagttttta tagaagcaac tgaatgtctg
     5941 ggtcttgttc ccactgactt actactaatc acgccagagg gctgggtttc tactgtgaac
     6001 taaactgaaa ctaaactccc tcactccccg tgccatcctc acacagctca gccccaggga
     6061 gagcggaagc agcttggcca tgtcactggc gtgcaaagcc ctcccctcag ttttgaggaa
     6121 caccctttgc cagtaggtgg ggatatacca ccatgatctt tggaaacctg ggcttcctgt
     6181 acaccagatt ggattgtcct ttcaaaatgg tgtctttagt tcataattct tagggaccaa
     6241 aggtgttttt aataggataa tgttttaatt gatttctaac aaaggtttac tctacatttt
     6301 aataccagtt tttttacatt ctagatattc caaatcaatt gctcgtggct ctaagttgta
     6361 aaatgttttc acgttatgaa tgtaattatt tccttaatgt atttttaaaa aaaaactaaa
     6421 atcatattta aaataacctt ggaaagacaa caggcgaagg aaagagaaag ttttttttta
     6481 attaactatg ttggtagccc atttgaaatg actgtaaata tattttgatt gtgtagctca
     6541 atgtatttaa ttcagaaagt aaaaattttt tatgtaaaga gacttgcaat gaaaaatcct
     6601 agttttcagt ccatgcccct atcttgtagt cactccctcc caacttttct cctctacaaa
     6661 ctgatttttt ttctactgtt gtaaccgtgt acccatcgac tggcgcccat tggcggaact
     6721 tgtttgtgta ttaataaaac tgtgctatgt agtccggcct tgtgtcctcc tgacagtggc
     6781 tcatggtgca gaagaagttg tt
//
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