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PREDICTED: Rattus norvegicus mitochondrial nucleoid associated protein 1 (Mtnap1), transcript variant X6, mRNA

NCBI Reference Sequence: XM_008768330.4

FASTA Graphics 

LOCUS       XM_008768330            3208 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus mitochondrial nucleoid associated
            protein 1 (Mtnap1), transcript variant X6, mRNA.
ACCESSION   XM_008768330
VERSION     XM_008768330.4
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086028) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_008768330.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3208
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..3208
                     /gene="Mtnap1"
                     /note="mitochondrial nucleoid associated protein 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 5 ESTs, 136 long SRA reads, 4
                     Proteins"
                     /db_xref="GeneID:287798"
                     /db_xref="RGD:1359207"
     CDS             1507..3099
                     /gene="Mtnap1"
                     /codon_start=1
                     /product="uncharacterized protein C17orf80 homolog isoform
                     X4"
                     /protein_id="XP_008766552.1"
                     /db_xref="GeneID:287798"
                     /db_xref="RGD:1359207"
                     /translation="MEVCPYCKKPFKRLKSHLPHCKMTGSSIPADQKVSQSKTATLTK
                     KEKRPTRDLTRAEEKELEREGPKRTVKVETSQAEWTTAASPLPEGASEGTHTTKAGET
                     KEKKLLSFRVLRRTKPEVTLQRVTAPQSPPKIESTRDVSESKGSPRCPSETEASSLVS
                     SREPFSTKQDREHVSAQPHAKPATSARLRLDTADPQRQKLLVKLLDVPTGDCRSPKNG
                     SHGVQRVAPSVSSREKDSQDGGHLSGVSPHSGDPETQRSESLLLGLHNGLLGKAQVRE
                     HQELGLGMELSQSKGNTENRMSVTDGQEATGLGHRGKDPIAATKAKPKATLEFRNVFM
                     PPQGALSQPLSVPGSESQSLPSLAVTSTPEEKGQFCGQSQVPAMTLRHHLASHSAQCH
                     IPENFPTTSEAPPRSVGLEWFPELYPGYVGLGVLPRRPQPWNWAAQMPPLATFQGRSV
                     SKVPWWERSSADSRSLEPLALTTSSLPLMRLLGAVHKGWVLCNTTIKRSGVGRLSMLF
                     AGYFVLCCSWSFKHLKLQRWRK"
     polyA_site      3208
                     /gene="Mtnap1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tttttctttt tttttttttt cttttctttt tttcggagct ggggaccaaa cccagggcct
       61 tgcacttgct aggcaagcgc tctaccactg agctaaatcc ccaaccccta ccccgaaaag
      121 tgctctctta aaactagaaa acctatgtat tgcctttgtc gtgtgcattt tgcaacagcc
      181 attcaattcc cttcagtgtg tcaatgtgtt ctcactacag taagaagact cattgtgcac
      241 ttggtagaaa acagtttggg tttgcatttc ccggacggta aagtgctggt tgctttaata
      301 cactggtagt tattttgcta agtggtttca gactttttgt tttttaatct attttactgg
      361 ccaggagata ttttcagtca cggtattaag tagttatagt atacgtgttt cgtcattcaa
      421 caaatgtcat acaccagctt cagtgttcaa ggtgtgtctc tgtgtgtgtt gattgtttga
      481 gaggcaatct ccctgtgtaa ccgaggctga cattaactac cacagcttcc tcagaacact
      541 ggggtacaca atatgctttg tgtgttttga gactatagcc gtgcccagga tacatatgtt
      601 tcctggcctt tggagttttt tttaaagaag cagtcatagc tcatagccga gctttgcaat
      661 tcaacgttct cctttcccaa ctccagagaa taacaagaga tagatggtct gtgatgtaaa
      721 tttccaaaga tttcaaacta attgataatg tacgatttta tatgtataca ataaccaatt
      781 atattacgat ttataagttg gaaattggga accatatctg ctcattttta ttttttatat
      841 gtgcctgtcg ctatattaat ataagcaggg attcagattc atttctcctg gattgtggga
      901 aatcctcctc cctttacttt ggagacaggg tctcatgaat ctcaggctgg tctattgacc
      961 tggccatcct gtctctagtc ccaggtgctg gagtcgtgga tgtctaccac agtatcaggt
     1021 tttatgccag gcaagcacca acctactgag ccacaccacc agccgataag agttctgagt
     1081 ccttacaccc cagtgaatct tggcttgtga aactttagaa actgttctaa ccagtttttg
     1141 cacgactcct catttcatcc ttaaaggaca gagttaagaa gagtggatgt gatttgttga
     1201 acaaattcct gggagtggga ggggctccga gggaggaaca cccacctgga ggcccctctc
     1261 acttttttac taagtgtatg tctatgtgcc tgcatgtgtg tgttatatgt gcacacagtg
     1321 ccccagcaga tcagaggaca ccagattccc ccaaaaggag agttacaggt ggttattgtt
     1381 aggtcacaaa cccaggacaa atggtgccta tttaatgtgt catagtggac ctggcctctg
     1441 ggttctccca gcatccctca tttcctacca gttacaagga agagcctgag tgattccaag
     1501 cccaggatgg aggtgtgccc ttattgtaag aagccattta agcgattaaa atcccacttg
     1561 ccgcactgta aaatgacagg atcatccata cccgctgatc aaaaagtttc tcagtccaag
     1621 acagcgacac ttactaaaaa agagaagagg cccaccagag acttaaccag agctgaagag
     1681 aaggagctag agagagaggg tccgaaaaga actgtgaaag tggaaaccag ccaagcagag
     1741 tggacaactg cagcctctcc gcttccagag ggtgcctcgg aaggcaccca tacaacaaaa
     1801 gcaggagaaa ccaaagagaa aaagctgctc tccttccgag tactcaggcg caccaagcca
     1861 gaggtgactc tgcagagagt cacagcccct cagtctcctc ccaagataga atccaccaga
     1921 gatgtgtctg agtccaaggg aagtccacgc tgcccctcag agacagaagc atcttcactg
     1981 gtcagctcaa gggaaccttt ttctactaag caagacagag agcatgtgtc agctcagcct
     2041 catgctaaac cagccacttc tgccaggctc agattggaca cagcggatcc ccaaaggcag
     2101 aagcttctgg taaaattatt agatgtgcct actggtgatt gtcgttctcc aaagaatggc
     2161 agccatgggg ttcagagagt agcaccctca gtgtcaagca gggagaaaga ctcccaagat
     2221 ggaggccacc tctcaggagt ctctccccac tctggtgacc ccgagaccca aaggtcagaa
     2281 tcactcctct tgggccttca caatggcctg ctgggtaaag cacaggtcag agagcatcaa
     2341 gaacttggcc ttgggatgga gttgagccag agtaagggaa atactgagaa caggatgtcc
     2401 gtcacagatg gacaggaagc cactggcttg ggccaccgtg gtaaggaccc cattgcagcc
     2461 acaaaggcaa agccaaaggc cacccttgaa tttaggaatg tgttcatgcc accacaggga
     2521 gctctgagtc agcctctctc agtgccaggg tcagagagtc agagcctccc ctctctagct
     2581 gtgacttcta ctccagaaga gaaaggccag ttctgtggac aaagtcaagt gcctgccatg
     2641 acactcaggc accacttagc gtcacactcc gctcagtgtc atattcccga gaacttcccc
     2701 actacctcag aggctcctcc caggtctgtg ggactggagt ggtttccaga actctatcct
     2761 ggttacgttg gactgggggt gttgccaagg aggcctcagc cttggaactg ggcagctcag
     2821 atgcctcctc ttgccacttt ccagggcagg agcgtctcaa aagttccttg gtgggaaaga
     2881 agttcggctg atagcaggag tttggaaccc ctggcgctta caacttccag cctccctcta
     2941 atgagactct tgggagctgt gcacaaaggc tgggtgctgt gcaacaccac cataaagagg
     3001 agtggtgtcg gacgcctctc gatgctgttt gctggctact ttgtcctgtg ctgtagctgg
     3061 agcttcaagc atctgaagct gcagcgctgg cgtaagtaag gatgagcgtg cccgggagcc
     3121 acggaatgtg acagagactg cagagaagag acactttaaa tttgtgccag gtcagggaga
     3181 gtgcaaataa taaaatgctg aaatcgcg
//
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