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NCBI Reference Sequence: XM_008768330.4
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LOCUS XM_008768330 3208 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus mitochondrial nucleoid associated protein 1 (Mtnap1), transcript variant X6, mRNA. ACCESSION XM_008768330 VERSION XM_008768330.4 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086028) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XM_008768330.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3208 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="10" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..3208 /gene="Mtnap1" /note="mitochondrial nucleoid associated protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 5 ESTs, 136 long SRA reads, 4 Proteins" /db_xref="GeneID:287798" /db_xref="RGD:1359207" CDS 1507..3099 /gene="Mtnap1" /codon_start=1 /product="uncharacterized protein C17orf80 homolog isoform X4" /protein_id="XP_008766552.1" /db_xref="GeneID:287798" /db_xref="RGD:1359207" /translation="MEVCPYCKKPFKRLKSHLPHCKMTGSSIPADQKVSQSKTATLTK KEKRPTRDLTRAEEKELEREGPKRTVKVETSQAEWTTAASPLPEGASEGTHTTKAGET KEKKLLSFRVLRRTKPEVTLQRVTAPQSPPKIESTRDVSESKGSPRCPSETEASSLVS SREPFSTKQDREHVSAQPHAKPATSARLRLDTADPQRQKLLVKLLDVPTGDCRSPKNG SHGVQRVAPSVSSREKDSQDGGHLSGVSPHSGDPETQRSESLLLGLHNGLLGKAQVRE HQELGLGMELSQSKGNTENRMSVTDGQEATGLGHRGKDPIAATKAKPKATLEFRNVFM PPQGALSQPLSVPGSESQSLPSLAVTSTPEEKGQFCGQSQVPAMTLRHHLASHSAQCH IPENFPTTSEAPPRSVGLEWFPELYPGYVGLGVLPRRPQPWNWAAQMPPLATFQGRSV SKVPWWERSSADSRSLEPLALTTSSLPLMRLLGAVHKGWVLCNTTIKRSGVGRLSMLF AGYFVLCCSWSFKHLKLQRWRK" polyA_site 3208 /gene="Mtnap1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttttctttt tttttttttt cttttctttt tttcggagct ggggaccaaa cccagggcct 61 tgcacttgct aggcaagcgc tctaccactg agctaaatcc ccaaccccta ccccgaaaag 121 tgctctctta aaactagaaa acctatgtat tgcctttgtc gtgtgcattt tgcaacagcc 181 attcaattcc cttcagtgtg tcaatgtgtt ctcactacag taagaagact cattgtgcac 241 ttggtagaaa acagtttggg tttgcatttc ccggacggta aagtgctggt tgctttaata 301 cactggtagt tattttgcta agtggtttca gactttttgt tttttaatct attttactgg 361 ccaggagata ttttcagtca cggtattaag tagttatagt atacgtgttt cgtcattcaa 421 caaatgtcat acaccagctt cagtgttcaa ggtgtgtctc tgtgtgtgtt gattgtttga 481 gaggcaatct ccctgtgtaa ccgaggctga cattaactac cacagcttcc tcagaacact 541 ggggtacaca atatgctttg tgtgttttga gactatagcc gtgcccagga tacatatgtt 601 tcctggcctt tggagttttt tttaaagaag cagtcatagc tcatagccga gctttgcaat 661 tcaacgttct cctttcccaa ctccagagaa taacaagaga tagatggtct gtgatgtaaa 721 tttccaaaga tttcaaacta attgataatg tacgatttta tatgtataca ataaccaatt 781 atattacgat ttataagttg gaaattggga accatatctg ctcattttta ttttttatat 841 gtgcctgtcg ctatattaat ataagcaggg attcagattc atttctcctg gattgtggga 901 aatcctcctc cctttacttt ggagacaggg tctcatgaat ctcaggctgg tctattgacc 961 tggccatcct gtctctagtc ccaggtgctg gagtcgtgga tgtctaccac agtatcaggt 1021 tttatgccag gcaagcacca acctactgag ccacaccacc agccgataag agttctgagt 1081 ccttacaccc cagtgaatct tggcttgtga aactttagaa actgttctaa ccagtttttg 1141 cacgactcct catttcatcc ttaaaggaca gagttaagaa gagtggatgt gatttgttga 1201 acaaattcct gggagtggga ggggctccga gggaggaaca cccacctgga ggcccctctc 1261 acttttttac taagtgtatg tctatgtgcc tgcatgtgtg tgttatatgt gcacacagtg 1321 ccccagcaga tcagaggaca ccagattccc ccaaaaggag agttacaggt ggttattgtt 1381 aggtcacaaa cccaggacaa atggtgccta tttaatgtgt catagtggac ctggcctctg 1441 ggttctccca gcatccctca tttcctacca gttacaagga agagcctgag tgattccaag 1501 cccaggatgg aggtgtgccc ttattgtaag aagccattta agcgattaaa atcccacttg 1561 ccgcactgta aaatgacagg atcatccata cccgctgatc aaaaagtttc tcagtccaag 1621 acagcgacac ttactaaaaa agagaagagg cccaccagag acttaaccag agctgaagag 1681 aaggagctag agagagaggg tccgaaaaga actgtgaaag tggaaaccag ccaagcagag 1741 tggacaactg cagcctctcc gcttccagag ggtgcctcgg aaggcaccca tacaacaaaa 1801 gcaggagaaa ccaaagagaa aaagctgctc tccttccgag tactcaggcg caccaagcca 1861 gaggtgactc tgcagagagt cacagcccct cagtctcctc ccaagataga atccaccaga 1921 gatgtgtctg agtccaaggg aagtccacgc tgcccctcag agacagaagc atcttcactg 1981 gtcagctcaa gggaaccttt ttctactaag caagacagag agcatgtgtc agctcagcct 2041 catgctaaac cagccacttc tgccaggctc agattggaca cagcggatcc ccaaaggcag 2101 aagcttctgg taaaattatt agatgtgcct actggtgatt gtcgttctcc aaagaatggc 2161 agccatgggg ttcagagagt agcaccctca gtgtcaagca gggagaaaga ctcccaagat 2221 ggaggccacc tctcaggagt ctctccccac tctggtgacc ccgagaccca aaggtcagaa 2281 tcactcctct tgggccttca caatggcctg ctgggtaaag cacaggtcag agagcatcaa 2341 gaacttggcc ttgggatgga gttgagccag agtaagggaa atactgagaa caggatgtcc 2401 gtcacagatg gacaggaagc cactggcttg ggccaccgtg gtaaggaccc cattgcagcc 2461 acaaaggcaa agccaaaggc cacccttgaa tttaggaatg tgttcatgcc accacaggga 2521 gctctgagtc agcctctctc agtgccaggg tcagagagtc agagcctccc ctctctagct 2581 gtgacttcta ctccagaaga gaaaggccag ttctgtggac aaagtcaagt gcctgccatg 2641 acactcaggc accacttagc gtcacactcc gctcagtgtc atattcccga gaacttcccc 2701 actacctcag aggctcctcc caggtctgtg ggactggagt ggtttccaga actctatcct 2761 ggttacgttg gactgggggt gttgccaagg aggcctcagc cttggaactg ggcagctcag 2821 atgcctcctc ttgccacttt ccagggcagg agcgtctcaa aagttccttg gtgggaaaga 2881 agttcggctg atagcaggag tttggaaccc ctggcgctta caacttccag cctccctcta 2941 atgagactct tgggagctgt gcacaaaggc tgggtgctgt gcaacaccac cataaagagg 3001 agtggtgtcg gacgcctctc gatgctgttt gctggctact ttgtcctgtg ctgtagctgg 3061 agcttcaagc atctgaagct gcagcgctgg cgtaagtaag gatgagcgtg cccgggagcc 3121 acggaatgtg acagagactg cagagaagag acactttaaa tttgtgccag gtcagggaga 3181 gtgcaaataa taaaatgctg aaatcgcg //
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