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PREDICTED: Homo sapiens lipoxygenase homology PLAT domains 1 (LOXHD1), transcript variant X11, mRNA

NCBI Reference Sequence: XM_006722391.4

FASTA Graphics 

LOCUS       XM_006722391            3762 bp    mRNA    linear   PRI 25-AUG-2024
DEFINITION  PREDICTED: Homo sapiens lipoxygenase homology PLAT domains 1
            (LOXHD1), transcript variant X11, mRNA.
ACCESSION   XM_006722391
VERSION     XM_006722391.4
DBLINK      BioProject: PRJNA168
KEYWORDS    RefSeq.
SOURCE      Homo sapiens (human)
  ORGANISM  Homo sapiens
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
            Catarrhini; Hominidae; Homo.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_000018.10) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Apr 5, 2022 this sequence version replaced XM_006722391.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_000001405.40-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           RefSeqFE; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/23/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3762
                     /organism="Homo sapiens"
                     /mol_type="mRNA"
                     /db_xref="taxon:9606"
                     /chromosome="18"
     gene            1..3762
                     /gene="LOXHD1"
                     /gene_synonym="DFNB77; LH2D1"
                     /note="lipoxygenase homology PLAT domains 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 8 ESTs, 5 Proteins, and 99% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     6 samples with support for all annotated introns"
                     /db_xref="GeneID:125336"
                     /db_xref="HGNC:HGNC:26521"
                     /db_xref="MIM:613072"
     CDS             129..3563
                     /gene="LOXHD1"
                     /gene_synonym="DFNB77; LH2D1"
                     /codon_start=1
                     /product="lipoxygenase homology domain-containing protein
                     1 isoform X11"
                     /protein_id="XP_006722454.1"
                     /db_xref="GeneID:125336"
                     /db_xref="HGNC:HGNC:26521"
                     /db_xref="MIM:613072"
                     /translation="MLRHLTDTFTIYAIDLGALTKIRIRHDNTGNRAGWFLDRIDITD
                     MNNEITYYFPCQRWLAVEEDDGQLSRELLPVDESYVLPQSEEGRGGGDNNPLDNLALE
                     QKDKSTTFSVTIKTGVKKNAGTDANVFITLFGTQDDTGMTLLKSSKTNSDKFERDSIE
                     IFTVETLDLGDLWKVRLGHDNTGKAPGWFVDWVEVDAPSLGKCMTFPCGRWLAKNEDD
                     GSIIRDLFHAELQTRLYTPFVPYEITLYTSDVFAAGTDANIFIIIYGCDAVCTQQKYL
                     CTNKREQKQFFERKSASRFIVELEDVGEIIEKIRIGHNNTGMNPGWHCSHVDIRRLLP
                     DKDGAETLTFPCDRWLATSEDDKKTIRELVPYDIFTEKYMKDGSLRQVYKEVEEPLDI
                     VLYSVQIFTGNIPGAGTDAKVYITIYGDLGDTGERYLGKSENRTNKFERGTADTFIIE
                     AADLGVIYKIKLRHDNSKWCADWYVEKVEIWNDTNEDEFLFLCGRWLSLKKEDGRLER
                     LFYEKEYTGDRSSNCSSPADFWEIALSSKMADVDISTVTGPMADYVQEGPIIPYYVSV
                     TTGKHKDAATDSRAFIFLIGEDDERSKRIWLDYPRGKRGFSRGSVEEFYVAGLDVGII
                     KKIEVLYEMTVWTGDVVGGGTDSNIFMTLYGINGSTEEMQLDKKKARFEREQNDTFIM
                     EILDIAPFTKMRIRIDGLGSRPEWFLERILLKNMNTGDLTMFYYGDWLSQRKGKKTLV
                     CEMCAVIDEEEMMEWTSYTVAVKTSDILGAGTDANVFIIIFGENGDSGTLALKQSANW
                     NKFERNNTDTFNFPDMLSLGHLCKLRVWHDNKGIFPGWHLSYVDVKDNSRDETFHFQC
                     DCWLSKSEGDGQTVRDFACANNKICDELEETTYEIVIETGNGGETRENVWLILEGRKN
                     RSKEFLMENSSRQRAFRKGTTDTFEFDSIYLGDIASLCVGHLAREDRFIPKRELAWHV
                     KTITITEMEYGNVYFFNCDCLIPLKRKRKYFKVFEVTKTTESFASKVQSLVPVKYEVI
                     VTTGYEPGAGTDANVFVTIFGANGDTGKRELKQKMRNLFERGSTDRFFLETLELGELR
                     KVRLEHDSSGYCSGWLVEKVEVTNTSTGVATIFNCGRWLDKKRGDGLTWRDLFPSV"
ORIGIN      
        1 agtacctctt cagtaacact gatactttgt ggaggggtta tgagagaatt gcaggcaggg
       61 ccccagcacc tagagcccat gggccagctg acccacagga acaaacagag aatggcgttg
      121 agtggcagat gctgaggcac ttgacagaca ccttcaccat ctatgccatt gacctggggg
      181 ccctgaccaa gattcggatt cgccacgaca acacaggcaa cagagcaggc tggttcctgg
      241 acagaataga cattactgac atgaacaacg agatcacgta ctactttcca tgccaacgtt
      301 ggctggcagt ggaggaagat gatggccagc tgtccaggga gctgttgcca gtggatgagt
      361 cctatgtgct gccacagagc gaggagggta ggggaggcgg tgacaacaac cccctcgaca
      421 acctggccct ggagcagaaa gataaatcta ccacattctc agtgaccata aagactgggg
      481 ttaagaagaa tgcgggcaca gatgctaatg tcttcatcac actctttggc acacaggatg
      541 acactggaat gaccctcctg aagtcctcca agacaaacag cgataagttt gagagggaca
      601 gcattgaaat cttcacggtg gagacgctgg atctgggaga cctgtggaaa gtccggcttg
      661 gccatgacaa cacaggcaag gccccaggct ggtttgtaga ctgggtagag gtggatgccc
      721 catctcttgg gaagtgcatg acgtttccct gtggccgctg gctggccaaa aacgaagacg
      781 acgggtccat catcagagac ctcttccatg cagagcttca gacgaggctg tacacaccat
      841 ttgttcctta cgagatcacc ctctacacca gtgatgtctt tgctgctggg acagatgcca
      901 acatcttcat catcatctat ggctgcgatg ccgtgtgcac ccagcagaag tatctgtgta
      961 ccaacaagag ggaacagaag cagttctttg agaggaagtc tgcctcccgc ttcatcgtag
     1021 agttagaaga tgtgggagaa atcattgaaa aaattcggat tggccataat aacacgggca
     1081 tgaatcctgg gtggcactgc tctcacgtgg acatccgcag gctcctcccg gataaagacg
     1141 gtgcagagac cttgactttc ccatgcgatc ggtggcttgc cacctctgag gatgacaaaa
     1201 agaccattcg agaactggtt ccatatgaca tcttcactga gaaatacatg aaagatgggt
     1261 ccttacggca agtctacaag gaagtagaag agcctctgga cattgtgctg tactcggtgc
     1321 agatcttcac agggaacatt cctggggcag ggacggatgc caaggtgtac atcaccatct
     1381 atggagacct cggggacact ggggagcgat accttggcaa gtcagagaac cggaccaaca
     1441 agttcgagag aggaacggct gacaccttca tcatcgaggc cgctgaccta ggcgtcatct
     1501 acaagatcaa gctccgccat gacaactcca agtggtgcgc agactggtac gtggagaagg
     1561 tggagatctg gaatgacacc aacgaggacg agttcctgtt cctatgcggg cgctggctct
     1621 ccctgaagaa ggaggatggg cgactcgaga ggctctttta cgagaaggag tacactgggg
     1681 accgcagcag caactgcagc agccctgctg acttctggga gatcgccctg agctccaaga
     1741 tggccgatgt cgacatcagc acagtgaccg ggcccatggc tgactacgtt caagagggcc
     1801 caattattcc ctactatgtg tcagtcacca ctgggaagca caaggacgcg gccactgaca
     1861 gccgagcctt catctttctc atcggggagg atgatgaacg tagtaagcgc atctggttgg
     1921 actacccccg agggaagagg ggcttcagcc gtggctctgt ggaggagttc tacgtcgcag
     1981 gcttggatgt gggcatcatc aagaaaatag aggttctcta tgaaatgacg gtgtggacag
     2041 gggatgtggt tggcgggggc actgactcca acatcttcat gaccctctac ggcatcaacg
     2101 ggagcacaga ggagatgcag ctggacaaaa agaaagccag gtttgagcgg gagcagaacg
     2161 acaccttcat catggagatc ctagacattg ctccattcac caagatgcgg atccggattg
     2221 atggcctggg cagtcggccg gagtggttcc tggagaggat cctactgaag aacatgaaca
     2281 ctggagacct gaccatgttc tactatggag actggctgtc ccagcggaag ggcaagaaga
     2341 ccctggtgtg tgaaatgtgt gccgttatcg atgaggaaga aatgatggag tggacctcct
     2401 acaccgtcgc agttaagacc agcgacatcc tgggagcagg cactgatgcc aacgtgttca
     2461 tcatcatctt cggggagaac ggggatagtg ggacactggc cctgaagcag tcggcaaact
     2521 ggaacaagtt tgagcggaac aacacggaca cattcaactt ccctgacatg ctgagcttgg
     2581 gccacctctg caagctgagg gtctggcacg acaacaaagg gatatttcct ggctggcatc
     2641 tgagctatgt cgatgtgaag gacaactccc gcgacgagac cttccacttc cagtgtgact
     2701 gctggctctc caagagtgag ggtgacgggc agacggtccg cgactttgcc tgtgccaaca
     2761 acaagatctg tgatgagctg gaagagacca cctacgagat cgtcatagaa acgggcaacg
     2821 gaggcgaaac cagggagaac gtctggctca tcctggaggg caggaagaac cgatccaaag
     2881 agtttctcat ggaaaattct tctaggcagc gggcctttag gaaggggacc acagacacgt
     2941 ttgagtttga cagcatctac ttgggggaca ttgcctccct ctgtgtgggc caccttgcca
     3001 gggaagaccg gtttatcccc aagagagaac ttgcctggca tgtcaagacc atcaccatca
     3061 ccgagatgga gtacggcaat gtgtacttct ttaactgtga ctgcctcatc cccctcaaga
     3121 ggaagaggaa gtacttcaag gtattcgagg ttaccaagac gacagagagc tttgccagca
     3181 aggtccagag cctggtgccc gtcaagtacg aagtcatcgt gacaacaggc tatgagccag
     3241 gggcaggcac tgatgccaac gtcttcgtga ccatctttgg ggccaacgga gacacaggca
     3301 agcgggagct gaagcagaaa atgcgcaacc tcttcgagcg gggcagcaca gaccgcttct
     3361 tcctggagac gctggagctg ggtgagctgc gcaaggtgcg cctggagcac gacagcagtg
     3421 gctactgctc aggctggctg gtggagaagg tggaggtcac caacaccagc accggcgtgg
     3481 ccaccatctt caactgtggc aggtggctgg acaagaagcg gggggatgga ctcacctgga
     3541 gagacctctt cccttctgtc tgaggggcta gggcccccac cctctcactg agatgcccca
     3601 atctcacatt tctgccctcc accttggcgg tcagcagccc ttcaaagcct ctagcattgg
     3661 cactgggggc tagcagtcca ctgagaactt catggggtcc tgctccccac cctaccccca
     3721 gtttattgaa cctacagtga taataattag catgtgtcat aa
//
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