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NCBI Reference Sequence: XM_006722391.4
FASTA Graphics
LOCUS XM_006722391 3762 bp mRNA linear PRI 25-AUG-2024 DEFINITION PREDICTED: Homo sapiens lipoxygenase homology PLAT domains 1 (LOXHD1), transcript variant X11, mRNA. ACCESSION XM_006722391 VERSION XM_006722391.4 DBLINK BioProject: PRJNA168 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_000018.10) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process On Apr 5, 2022 this sequence version replaced XM_006722391.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_000001405.40-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/23/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3762 /organism="Homo sapiens" /mol_type="mRNA" /db_xref="taxon:9606" /chromosome="18" gene 1..3762 /gene="LOXHD1" /gene_synonym="DFNB77; LH2D1" /note="lipoxygenase homology PLAT domains 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 8 ESTs, 5 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns" /db_xref="GeneID:125336" /db_xref="HGNC:HGNC:26521" /db_xref="MIM:613072" CDS 129..3563 /gene="LOXHD1" /gene_synonym="DFNB77; LH2D1" /codon_start=1 /product="lipoxygenase homology domain-containing protein 1 isoform X11" /protein_id="XP_006722454.1" /db_xref="GeneID:125336" /db_xref="HGNC:HGNC:26521" /db_xref="MIM:613072" /translation="MLRHLTDTFTIYAIDLGALTKIRIRHDNTGNRAGWFLDRIDITD MNNEITYYFPCQRWLAVEEDDGQLSRELLPVDESYVLPQSEEGRGGGDNNPLDNLALE QKDKSTTFSVTIKTGVKKNAGTDANVFITLFGTQDDTGMTLLKSSKTNSDKFERDSIE IFTVETLDLGDLWKVRLGHDNTGKAPGWFVDWVEVDAPSLGKCMTFPCGRWLAKNEDD GSIIRDLFHAELQTRLYTPFVPYEITLYTSDVFAAGTDANIFIIIYGCDAVCTQQKYL CTNKREQKQFFERKSASRFIVELEDVGEIIEKIRIGHNNTGMNPGWHCSHVDIRRLLP DKDGAETLTFPCDRWLATSEDDKKTIRELVPYDIFTEKYMKDGSLRQVYKEVEEPLDI VLYSVQIFTGNIPGAGTDAKVYITIYGDLGDTGERYLGKSENRTNKFERGTADTFIIE AADLGVIYKIKLRHDNSKWCADWYVEKVEIWNDTNEDEFLFLCGRWLSLKKEDGRLER LFYEKEYTGDRSSNCSSPADFWEIALSSKMADVDISTVTGPMADYVQEGPIIPYYVSV TTGKHKDAATDSRAFIFLIGEDDERSKRIWLDYPRGKRGFSRGSVEEFYVAGLDVGII KKIEVLYEMTVWTGDVVGGGTDSNIFMTLYGINGSTEEMQLDKKKARFEREQNDTFIM EILDIAPFTKMRIRIDGLGSRPEWFLERILLKNMNTGDLTMFYYGDWLSQRKGKKTLV CEMCAVIDEEEMMEWTSYTVAVKTSDILGAGTDANVFIIIFGENGDSGTLALKQSANW NKFERNNTDTFNFPDMLSLGHLCKLRVWHDNKGIFPGWHLSYVDVKDNSRDETFHFQC DCWLSKSEGDGQTVRDFACANNKICDELEETTYEIVIETGNGGETRENVWLILEGRKN RSKEFLMENSSRQRAFRKGTTDTFEFDSIYLGDIASLCVGHLAREDRFIPKRELAWHV KTITITEMEYGNVYFFNCDCLIPLKRKRKYFKVFEVTKTTESFASKVQSLVPVKYEVI VTTGYEPGAGTDANVFVTIFGANGDTGKRELKQKMRNLFERGSTDRFFLETLELGELR KVRLEHDSSGYCSGWLVEKVEVTNTSTGVATIFNCGRWLDKKRGDGLTWRDLFPSV" ORIGIN 1 agtacctctt cagtaacact gatactttgt ggaggggtta tgagagaatt gcaggcaggg 61 ccccagcacc tagagcccat gggccagctg acccacagga acaaacagag aatggcgttg 121 agtggcagat gctgaggcac ttgacagaca ccttcaccat ctatgccatt gacctggggg 181 ccctgaccaa gattcggatt cgccacgaca acacaggcaa cagagcaggc tggttcctgg 241 acagaataga cattactgac atgaacaacg agatcacgta ctactttcca tgccaacgtt 301 ggctggcagt ggaggaagat gatggccagc tgtccaggga gctgttgcca gtggatgagt 361 cctatgtgct gccacagagc gaggagggta ggggaggcgg tgacaacaac cccctcgaca 421 acctggccct ggagcagaaa gataaatcta ccacattctc agtgaccata aagactgggg 481 ttaagaagaa tgcgggcaca gatgctaatg tcttcatcac actctttggc acacaggatg 541 acactggaat gaccctcctg aagtcctcca agacaaacag cgataagttt gagagggaca 601 gcattgaaat cttcacggtg gagacgctgg atctgggaga cctgtggaaa gtccggcttg 661 gccatgacaa cacaggcaag gccccaggct ggtttgtaga ctgggtagag gtggatgccc 721 catctcttgg gaagtgcatg acgtttccct gtggccgctg gctggccaaa aacgaagacg 781 acgggtccat catcagagac ctcttccatg cagagcttca gacgaggctg tacacaccat 841 ttgttcctta cgagatcacc ctctacacca gtgatgtctt tgctgctggg acagatgcca 901 acatcttcat catcatctat ggctgcgatg ccgtgtgcac ccagcagaag tatctgtgta 961 ccaacaagag ggaacagaag cagttctttg agaggaagtc tgcctcccgc ttcatcgtag 1021 agttagaaga tgtgggagaa atcattgaaa aaattcggat tggccataat aacacgggca 1081 tgaatcctgg gtggcactgc tctcacgtgg acatccgcag gctcctcccg gataaagacg 1141 gtgcagagac cttgactttc ccatgcgatc ggtggcttgc cacctctgag gatgacaaaa 1201 agaccattcg agaactggtt ccatatgaca tcttcactga gaaatacatg aaagatgggt 1261 ccttacggca agtctacaag gaagtagaag agcctctgga cattgtgctg tactcggtgc 1321 agatcttcac agggaacatt cctggggcag ggacggatgc caaggtgtac atcaccatct 1381 atggagacct cggggacact ggggagcgat accttggcaa gtcagagaac cggaccaaca 1441 agttcgagag aggaacggct gacaccttca tcatcgaggc cgctgaccta ggcgtcatct 1501 acaagatcaa gctccgccat gacaactcca agtggtgcgc agactggtac gtggagaagg 1561 tggagatctg gaatgacacc aacgaggacg agttcctgtt cctatgcggg cgctggctct 1621 ccctgaagaa ggaggatggg cgactcgaga ggctctttta cgagaaggag tacactgggg 1681 accgcagcag caactgcagc agccctgctg acttctggga gatcgccctg agctccaaga 1741 tggccgatgt cgacatcagc acagtgaccg ggcccatggc tgactacgtt caagagggcc 1801 caattattcc ctactatgtg tcagtcacca ctgggaagca caaggacgcg gccactgaca 1861 gccgagcctt catctttctc atcggggagg atgatgaacg tagtaagcgc atctggttgg 1921 actacccccg agggaagagg ggcttcagcc gtggctctgt ggaggagttc tacgtcgcag 1981 gcttggatgt gggcatcatc aagaaaatag aggttctcta tgaaatgacg gtgtggacag 2041 gggatgtggt tggcgggggc actgactcca acatcttcat gaccctctac ggcatcaacg 2101 ggagcacaga ggagatgcag ctggacaaaa agaaagccag gtttgagcgg gagcagaacg 2161 acaccttcat catggagatc ctagacattg ctccattcac caagatgcgg atccggattg 2221 atggcctggg cagtcggccg gagtggttcc tggagaggat cctactgaag aacatgaaca 2281 ctggagacct gaccatgttc tactatggag actggctgtc ccagcggaag ggcaagaaga 2341 ccctggtgtg tgaaatgtgt gccgttatcg atgaggaaga aatgatggag tggacctcct 2401 acaccgtcgc agttaagacc agcgacatcc tgggagcagg cactgatgcc aacgtgttca 2461 tcatcatctt cggggagaac ggggatagtg ggacactggc cctgaagcag tcggcaaact 2521 ggaacaagtt tgagcggaac aacacggaca cattcaactt ccctgacatg ctgagcttgg 2581 gccacctctg caagctgagg gtctggcacg acaacaaagg gatatttcct ggctggcatc 2641 tgagctatgt cgatgtgaag gacaactccc gcgacgagac cttccacttc cagtgtgact 2701 gctggctctc caagagtgag ggtgacgggc agacggtccg cgactttgcc tgtgccaaca 2761 acaagatctg tgatgagctg gaagagacca cctacgagat cgtcatagaa acgggcaacg 2821 gaggcgaaac cagggagaac gtctggctca tcctggaggg caggaagaac cgatccaaag 2881 agtttctcat ggaaaattct tctaggcagc gggcctttag gaaggggacc acagacacgt 2941 ttgagtttga cagcatctac ttgggggaca ttgcctccct ctgtgtgggc caccttgcca 3001 gggaagaccg gtttatcccc aagagagaac ttgcctggca tgtcaagacc atcaccatca 3061 ccgagatgga gtacggcaat gtgtacttct ttaactgtga ctgcctcatc cccctcaaga 3121 ggaagaggaa gtacttcaag gtattcgagg ttaccaagac gacagagagc tttgccagca 3181 aggtccagag cctggtgccc gtcaagtacg aagtcatcgt gacaacaggc tatgagccag 3241 gggcaggcac tgatgccaac gtcttcgtga ccatctttgg ggccaacgga gacacaggca 3301 agcgggagct gaagcagaaa atgcgcaacc tcttcgagcg gggcagcaca gaccgcttct 3361 tcctggagac gctggagctg ggtgagctgc gcaaggtgcg cctggagcac gacagcagtg 3421 gctactgctc aggctggctg gtggagaagg tggaggtcac caacaccagc accggcgtgg 3481 ccaccatctt caactgtggc aggtggctgg acaagaagcg gggggatgga ctcacctgga 3541 gagacctctt cccttctgtc tgaggggcta gggcccccac cctctcactg agatgcccca 3601 atctcacatt tctgccctcc accttggcgg tcagcagccc ttcaaagcct ctagcattgg 3661 cactgggggc tagcagtcca ctgagaactt catggggtcc tgctccccac cctaccccca 3721 gtttattgaa cctacagtga taataattag catgtgtcat aa //
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