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PREDICTED: Rattus norvegicus sirtuin 5 (Sirt5), transcript variant X2, mRNA

NCBI Reference Sequence: XM_006253802.3

FASTA Graphics 

LOCUS       XM_006253802            1458 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus sirtuin 5 (Sirt5), transcript variant
            X2, mRNA.
ACCESSION   XM_006253802
VERSION     XM_006253802.3
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086035) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006253802.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1458
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1458
                     /gene="Sirt5"
                     /note="sirtuin 5; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 15 ESTs, 118 long SRA
                     reads, 11 Proteins"
                     /db_xref="GeneID:306840"
                     /db_xref="RGD:1303285"
     CDS             163..1095
                     /gene="Sirt5"
                     /codon_start=1
                     /product="NAD-dependent protein deacylase sirtuin-5,
                     mitochondrial isoform X1"
                     /protein_id="XP_006253864.1"
                     /db_xref="GeneID:306840"
                     /db_xref="RGD:1303285"
                     /translation="MRPLPVAPGRLFSQLCCGPKPSASPQSKICLTMARPSSNMADFR
                     KCFANAKHIVIISGAGVSAESGVPTFRGTGGYWRKWQAQHLATPLAFAHNPSQVWEFY
                     HYRREVMRNKEPNPGHLAIAQCEARLRDQGRRVVVITQNIDELHRKAGTKNLLEIHGT
                     LFKTRCTSCGNVAENYKSPICPALLGKGAPEPDTQESRIPVHKLPRCEEAGCGGLLRP
                     HVVWFGENLDPAILKEVDRELARCDLCLVVGTSSVVYPAAMFAPQVASRGVPVAEFNM
                     ETTPATNRFRFHFPGPCGVTLPEALAPHETERIS"
     polyA_site      1458
                     /gene="Sirt5"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cctccccaga cctctcgtgc ctgcaccgtc cccaccgcct tttgcaggtt cgtctcgggc
       61 cctgttcggg ctcccagctt tgtcaaggct ccgcgcgccg catcccgcgc atgcgcgcct
      121 gggtgcggcc tgcccaggga agtaatcctt caacaaaaac ctatgcgacc gctcccggtc
      181 gctcccggac gtctcttctc ccagctgtgt tgtggaccga agccttcagc ctccccacag
      241 agcaagatct gcctcaccat ggctcgtcca agttccaata tggcagattt tcggaagtgt
      301 tttgcgaacg caaagcacat agtcatcatc tcgggggctg gtgttagtgc ggagagtggg
      361 gttccaacat tcagaggaac cggaggctat tggagaaaat ggcaagctca gcacctggcg
      421 actcctctgg cctttgctca caacccctca caggtgtggg agttttacca ctaccggagg
      481 gaggtcatgc ggaacaagga acccaaccct gggcacctgg ccattgccca atgtgaagcc
      541 cggctgcgtg accagggcag acgggttgtg gtcatcaccc agaacattga tgagttacat
      601 cgaaaggctg gcaccaagaa cctgctggaa atccacggaa ccttatttaa aactcggtgt
      661 acctcgtgtg gcaatgttgc tgagaactac aagagtccga tttgtccagc cttattggga
      721 aaaggggccc cagaaccaga tactcaagag tccagaatcc cagtccacaa acttccccgg
      781 tgcgaggagg caggatgtgg aggcttgctg cgacctcacg tggtgtggtt tggagaaaac
      841 ctggatcctg ccattctgaa agaggtggac agagagctcg cccgctgtga cctgtgtcta
      901 gtggtgggaa cgtcctctgt ggtctaccca gctgccatgt ttgcccctca ggtggcttcc
      961 aggggggtcc cggtggccga gtttaacatg gaaaccaccc cagccaccaa cagattcagg
     1021 tttcattttc ccggaccctg tggagtaact cttcctgaag cccttgctcc ccatgaaact
     1081 gaaaggattt cttaattgcc ccatggaaag aggagaagat cctggagcac agatgcaggg
     1141 cactgacagg agaagtggtt ttgtggatgg tgagctgaac ttcggaaaaa atctaaagat
     1201 accctccgag cctctagcag acagtcggct aagtgacggt ttcaggatca caacagcaaa
     1261 tgtgttttat ctggaagaag ctgtcaaggt cttccatgtt atttgatttg acctgaaata
     1321 tgagtatttt ggatctgata ttttggttag ttactggaaa ggaaaaaact gtaatcaaat
     1381 tgtttgaaaa gatgggaatt atcccgatcg tacctttgca tcttgggaaa gacggaaata
     1441 gagaatttaa atcccaaa
//
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