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NCBI Reference Sequence: XM_006253802.3
FASTA Graphics
LOCUS XM_006253802 1458 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus sirtuin 5 (Sirt5), transcript variant X2, mRNA. ACCESSION XM_006253802 VERSION XM_006253802.3 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086035) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Jan 21, 2021 this sequence version replaced XM_006253802.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1458 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="17" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..1458 /gene="Sirt5" /note="sirtuin 5; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 ESTs, 118 long SRA reads, 11 Proteins" /db_xref="GeneID:306840" /db_xref="RGD:1303285" CDS 163..1095 /gene="Sirt5" /codon_start=1 /product="NAD-dependent protein deacylase sirtuin-5, mitochondrial isoform X1" /protein_id="XP_006253864.1" /db_xref="GeneID:306840" /db_xref="RGD:1303285" /translation="MRPLPVAPGRLFSQLCCGPKPSASPQSKICLTMARPSSNMADFR KCFANAKHIVIISGAGVSAESGVPTFRGTGGYWRKWQAQHLATPLAFAHNPSQVWEFY HYRREVMRNKEPNPGHLAIAQCEARLRDQGRRVVVITQNIDELHRKAGTKNLLEIHGT LFKTRCTSCGNVAENYKSPICPALLGKGAPEPDTQESRIPVHKLPRCEEAGCGGLLRP HVVWFGENLDPAILKEVDRELARCDLCLVVGTSSVVYPAAMFAPQVASRGVPVAEFNM ETTPATNRFRFHFPGPCGVTLPEALAPHETERIS" polyA_site 1458 /gene="Sirt5" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cctccccaga cctctcgtgc ctgcaccgtc cccaccgcct tttgcaggtt cgtctcgggc 61 cctgttcggg ctcccagctt tgtcaaggct ccgcgcgccg catcccgcgc atgcgcgcct 121 gggtgcggcc tgcccaggga agtaatcctt caacaaaaac ctatgcgacc gctcccggtc 181 gctcccggac gtctcttctc ccagctgtgt tgtggaccga agccttcagc ctccccacag 241 agcaagatct gcctcaccat ggctcgtcca agttccaata tggcagattt tcggaagtgt 301 tttgcgaacg caaagcacat agtcatcatc tcgggggctg gtgttagtgc ggagagtggg 361 gttccaacat tcagaggaac cggaggctat tggagaaaat ggcaagctca gcacctggcg 421 actcctctgg cctttgctca caacccctca caggtgtggg agttttacca ctaccggagg 481 gaggtcatgc ggaacaagga acccaaccct gggcacctgg ccattgccca atgtgaagcc 541 cggctgcgtg accagggcag acgggttgtg gtcatcaccc agaacattga tgagttacat 601 cgaaaggctg gcaccaagaa cctgctggaa atccacggaa ccttatttaa aactcggtgt 661 acctcgtgtg gcaatgttgc tgagaactac aagagtccga tttgtccagc cttattggga 721 aaaggggccc cagaaccaga tactcaagag tccagaatcc cagtccacaa acttccccgg 781 tgcgaggagg caggatgtgg aggcttgctg cgacctcacg tggtgtggtt tggagaaaac 841 ctggatcctg ccattctgaa agaggtggac agagagctcg cccgctgtga cctgtgtcta 901 gtggtgggaa cgtcctctgt ggtctaccca gctgccatgt ttgcccctca ggtggcttcc 961 aggggggtcc cggtggccga gtttaacatg gaaaccaccc cagccaccaa cagattcagg 1021 tttcattttc ccggaccctg tggagtaact cttcctgaag cccttgctcc ccatgaaact 1081 gaaaggattt cttaattgcc ccatggaaag aggagaagat cctggagcac agatgcaggg 1141 cactgacagg agaagtggtt ttgtggatgg tgagctgaac ttcggaaaaa atctaaagat 1201 accctccgag cctctagcag acagtcggct aagtgacggt ttcaggatca caacagcaaa 1261 tgtgttttat ctggaagaag ctgtcaaggt cttccatgtt atttgatttg acctgaaata 1321 tgagtatttt ggatctgata ttttggttag ttactggaaa ggaaaaaact gtaatcaaat 1381 tgtttgaaaa gatgggaatt atcccgatcg tacctttgca tcttgggaaa gacggaaata 1441 gagaatttaa atcccaaa //
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