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PREDICTED: Rattus norvegicus NHERF family PDZ scaffold protein 2 (Nherf2), transcript variant X1, mRNA

NCBI Reference Sequence: XM_006245893.5

FASTA Graphics 

LOCUS       XM_006245893            1877 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus NHERF family PDZ scaffold protein 2
            (Nherf2), transcript variant X1, mRNA.
ACCESSION   XM_006245893
VERSION     XM_006245893.5
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086028) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Feb 22, 2024 this sequence version replaced XM_006245893.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1877
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..1877
                     /gene="Nherf2"
                     /gene_synonym="E3karp; Slc9a3r2"
                     /note="NHERF family PDZ scaffold protein 2; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 21 ESTs, 100 long SRA reads, 4 Proteins"
                     /db_xref="GeneID:116501"
                     /db_xref="RGD:620380"
     CDS             176..856
                     /gene="Nherf2"
                     /gene_synonym="E3karp; Slc9a3r2"
                     /codon_start=1
                     /product="Na(+)/H(+) exchange regulatory cofactor NHE-RF2
                     isoform X1"
                     /protein_id="XP_006245955.1"
                     /db_xref="GeneID:116501"
                     /db_xref="RGD:620380"
                     /translation="MARSWITMLPASTSGAPPVNSQLGFVQDVNGPPRELRPRLCHLR
                     RGPQGYGFNLHSDKSRPGQYIRSVDPGSPASLSGLRAQDRLIEVNGQNVEGLRHAEVV
                     ARIKAQEDEARLLVVDPETDEHFKRLRVVPTEDHVEGPLPSPVTNGTSLAQLNGGSVC
                     SSRSDLPGSEKDNEDGSAWKRDPFQESGLHLSPTAAEAKEKARATRVNKRAPQMDWNR
                     KREIFSNF"
     polyA_site      1877
                     /gene="Nherf2"
                     /gene_synonym="E3karp; Slc9a3r2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gctcagtaac caccctgcta tccaaaatga gtcagtccct actacgtccc cacccatccc
       61 cagggatcct gggtcacagt gggaggtaga taagtggggt gacagtctca tctggtccaa
      121 gagctctgcc actccaggct ggccacctcc tgccagccac ccctagccac gtctcatggc
      181 tcgctcctgg attaccatgc tgcctgcctc cacctcagga gcccctcctg tgaactctca
      241 actggggttt gttcaggatg tcaatgggcc cccaagagag ctgcgtcccc ggctctgcca
      301 cttacgaagg ggaccccagg gctacggatt caacctgcac agtgacaagt ctcggcctgg
      361 ccaatacatc cgctctgtgg accctggctc tcctgcttct ctctctggcc tccgggccca
      421 agaccggctc attgaggtga atgggcagaa tgtggagggg ctgcgccatg ccgaagttgt
      481 tgccagaatc aaggcacagg aggatgaggc ccggttgctg gttgtagacc ccgagactga
      541 tgaacacttc aaacggttgc gggtcgtacc caccgaggat cacgtggaag gtccactgcc
      601 atcaccagtc acgaacggga ccagccttgc ccagctcaat ggtggctccg tgtgctcttc
      661 ccgaagcgac ctgccaggct cagagaagga caatgaggat ggcagtgctt ggaagagaga
      721 ccccttccag gaaagtggtc tccacctgag ccccacagca gccgaggcca aggagaaggc
      781 tcgagctact cgggtcaata agagagcacc acagatggac tggaaccgga agcgagagat
      841 cttcagcaac ttctgagccc ctctctgcct gtccaggggt cccacggtct cttcctgcac
      901 ggaccttggg cctctccaga gctccccaag cctcagcaga ctggaaggtg gtattacacc
      961 acccagaaac caacccacga ccccatgaac ccttgtcttg tccactgggt gctgcggctg
     1021 tcatagcaag atcagagaag agagaaaccg agagagagaa agagagaaag agggagagag
     1081 agagagagag agagagagag agagagagag agagagaaag aaagataggc acagccagcc
     1141 aagacagaca cagagacaga aaagagtgag agagggagta tgcgtggtgg tctgccaagg
     1201 gccttagccg ttctgccttg ggcctgctga ctgaaaggaa ttcatgtttt cgcttttttt
     1261 tttttcctaa aagttctcca gctccacata tgtttgtagt taatagtgga gccccctccc
     1321 ccaacccctt gggactcact cctaatactt gcaataaaac agaacctttc tctgcaaacc
     1381 ccttcttacc cgccctgtca gcagcgccac cctgagaaga gaccagggaa cagacagtca
     1441 ggggacctca ggcccagctg tgcctggagg agctgtccct ctgtcccatc cctcatatgg
     1501 gatggtccct ggaccaggcc tctcttctct gcctagctac ccctgtgctg cctcccacat
     1561 gctgggttct ggaatgcaga gcctaggctc tctgaggggc cagaggatgg gtgttccatg
     1621 actcttaaga gggcagcctc cggacaagcc gcttatcctg ctgtgcaact ccaggacctg
     1681 gaatgtgggc ctgggcaagc cattcccggg tatgatccta ggcacctggg cctggcccct
     1741 gccttatgcc taccaggttc ctacccttgg cctctcttca gtgctctcaa ctccccagac
     1801 tcactcactg gcaccgcagt ctgcctcata agccatagcg cacgcgcgcc ctcgaattaa
     1861 acaggccttg cctcgaa
//
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