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NCBI Reference Sequence: XM_006245893.5
FASTA Graphics
LOCUS XM_006245893 1877 bp mRNA linear ROD 22-FEB-2024 DEFINITION PREDICTED: Rattus norvegicus NHERF family PDZ scaffold protein 2 (Nherf2), transcript variant X1, mRNA. ACCESSION XM_006245893 VERSION XM_006245893.5 DBLINK BioProject: PRJNA1074393 KEYWORDS RefSeq. SOURCE Rattus norvegicus (Norway rat) ORGANISM Rattus norvegicus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_086028) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Feb 22, 2024 this sequence version replaced XM_006245893.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_036323735.1-RS_2024_02 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.2 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 02/09/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1877 /organism="Rattus norvegicus" /mol_type="mRNA" /strain="BN/NHsdMcwi" /bio_material="RGD 61498" /db_xref="taxon:10116" /chromosome="10" /sex="male" /tissue_type="kidney, spleen, liver" /geo_loc_name="USA: Wisconsin, Milwaukee" /lat_lon="43.05 N 88.04 W" /collected_by="Rebecca Schilling, Melinda Dwinell" gene 1..1877 /gene="Nherf2" /gene_synonym="E3karp; Slc9a3r2" /note="NHERF family PDZ scaffold protein 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 ESTs, 100 long SRA reads, 4 Proteins" /db_xref="GeneID:116501" /db_xref="RGD:620380" CDS 176..856 /gene="Nherf2" /gene_synonym="E3karp; Slc9a3r2" /codon_start=1 /product="Na(+)/H(+) exchange regulatory cofactor NHE-RF2 isoform X1" /protein_id="XP_006245955.1" /db_xref="GeneID:116501" /db_xref="RGD:620380" /translation="MARSWITMLPASTSGAPPVNSQLGFVQDVNGPPRELRPRLCHLR RGPQGYGFNLHSDKSRPGQYIRSVDPGSPASLSGLRAQDRLIEVNGQNVEGLRHAEVV ARIKAQEDEARLLVVDPETDEHFKRLRVVPTEDHVEGPLPSPVTNGTSLAQLNGGSVC SSRSDLPGSEKDNEDGSAWKRDPFQESGLHLSPTAAEAKEKARATRVNKRAPQMDWNR KREIFSNF" polyA_site 1877 /gene="Nherf2" /gene_synonym="E3karp; Slc9a3r2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gctcagtaac caccctgcta tccaaaatga gtcagtccct actacgtccc cacccatccc 61 cagggatcct gggtcacagt gggaggtaga taagtggggt gacagtctca tctggtccaa 121 gagctctgcc actccaggct ggccacctcc tgccagccac ccctagccac gtctcatggc 181 tcgctcctgg attaccatgc tgcctgcctc cacctcagga gcccctcctg tgaactctca 241 actggggttt gttcaggatg tcaatgggcc cccaagagag ctgcgtcccc ggctctgcca 301 cttacgaagg ggaccccagg gctacggatt caacctgcac agtgacaagt ctcggcctgg 361 ccaatacatc cgctctgtgg accctggctc tcctgcttct ctctctggcc tccgggccca 421 agaccggctc attgaggtga atgggcagaa tgtggagggg ctgcgccatg ccgaagttgt 481 tgccagaatc aaggcacagg aggatgaggc ccggttgctg gttgtagacc ccgagactga 541 tgaacacttc aaacggttgc gggtcgtacc caccgaggat cacgtggaag gtccactgcc 601 atcaccagtc acgaacggga ccagccttgc ccagctcaat ggtggctccg tgtgctcttc 661 ccgaagcgac ctgccaggct cagagaagga caatgaggat ggcagtgctt ggaagagaga 721 ccccttccag gaaagtggtc tccacctgag ccccacagca gccgaggcca aggagaaggc 781 tcgagctact cgggtcaata agagagcacc acagatggac tggaaccgga agcgagagat 841 cttcagcaac ttctgagccc ctctctgcct gtccaggggt cccacggtct cttcctgcac 901 ggaccttggg cctctccaga gctccccaag cctcagcaga ctggaaggtg gtattacacc 961 acccagaaac caacccacga ccccatgaac ccttgtcttg tccactgggt gctgcggctg 1021 tcatagcaag atcagagaag agagaaaccg agagagagaa agagagaaag agggagagag 1081 agagagagag agagagagag agagagagag agagagaaag aaagataggc acagccagcc 1141 aagacagaca cagagacaga aaagagtgag agagggagta tgcgtggtgg tctgccaagg 1201 gccttagccg ttctgccttg ggcctgctga ctgaaaggaa ttcatgtttt cgcttttttt 1261 tttttcctaa aagttctcca gctccacata tgtttgtagt taatagtgga gccccctccc 1321 ccaacccctt gggactcact cctaatactt gcaataaaac agaacctttc tctgcaaacc 1381 ccttcttacc cgccctgtca gcagcgccac cctgagaaga gaccagggaa cagacagtca 1441 ggggacctca ggcccagctg tgcctggagg agctgtccct ctgtcccatc cctcatatgg 1501 gatggtccct ggaccaggcc tctcttctct gcctagctac ccctgtgctg cctcccacat 1561 gctgggttct ggaatgcaga gcctaggctc tctgaggggc cagaggatgg gtgttccatg 1621 actcttaaga gggcagcctc cggacaagcc gcttatcctg ctgtgcaact ccaggacctg 1681 gaatgtgggc ctgggcaagc cattcccggg tatgatccta ggcacctggg cctggcccct 1741 gccttatgcc taccaggttc ctacccttgg cctctcttca gtgctctcaa ctccccagac 1801 tcactcactg gcaccgcagt ctgcctcata agccatagcg cacgcgcgcc ctcgaattaa 1861 acaggccttg cctcgaa //
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