U.S. flag

An official website of the United States government

PREDICTED: Danio rerio chaperonin containing TCP1, subunit 8 (theta) (cct8), transcript variant X1, mRNA

NCBI Reference Sequence: XM_005155366.4

FASTA Graphics 

LOCUS       XM_005155366            2024 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio chaperonin containing TCP1, subunit 8
            (theta) (cct8), transcript variant X1, mRNA.
ACCESSION   XM_005155366
VERSION     XM_005155366.4
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007121.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2024 this sequence version replaced XM_005155366.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2024
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="10"
     gene            1..2024
                     /gene="cct8"
                     /gene_synonym="fa22h09; wu:fa22h09; zgc:56059"
                     /note="chaperonin containing TCP1, subunit 8 (theta);
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 61 ESTs, 203 long SRA reads, 1 Protein, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 151 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:394037"
                     /db_xref="ZFIN:ZDB-GENE-040426-876"
     misc_feature    1
                     /gene="cct8"
                     /gene_synonym="fa22h09; wu:fa22h09; zgc:56059"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             76..1752
                     /gene="cct8"
                     /gene_synonym="fa22h09; wu:fa22h09; zgc:56059"
                     /codon_start=1
                     /product="T-complex protein 1 subunit theta isoform X1"
                     /protein_id="XP_005155423.1"
                     /db_xref="GeneID:394037"
                     /db_xref="ZFIN:ZDB-GENE-040426-876"
                     /translation="MALHVPKAPGFAQMLKDGAKHYSGLEEAVFRNIQACKELAQTTR
                     TAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTN
                     FVLVFAGALLELAEELLRMGLSVSEVIEGYEMACKKALEILPDCVCSSAKNLHDLEEA
                     TAMIRSAVMSKQYGNEDFLANLIAQACVSIFPESGSFNVDNVRVCKILGCGLNSSTML
                     HGMVFKKEAEGDVTSVKDAKIAVFSCPFDCTVTETKGTVLIKNADELMNFSKGEEDLM
                     EAQVKAIADSGASVVVTGGKVADMALHYANKYKLMVVRLNSKWDLRRLCKTVGATALP
                     RLTSPTPEEMGRCDSVYLSEVGDTQVVVFKHDKEDGAISTLVIRGSTDNLMDDIERAI
                     DDGVNTFKVLVRDARLCPGAGATEIELAKHITSYGESCPGLEQYAIKKYAEAFEALPR
                     ALAENSGVKGNELISKLYATHHEGNKNSGFDIEGEGPAVRDMMEAGILDPYLVKYWGI
                     KLATNAAITVLRVDQIIMAKPAGGPKAPKQQGHWDKDGWDDEPDKFDAHH"
     polyA_site      2024
                     /gene="cct8"
                     /gene_synonym="fa22h09; wu:fa22h09; zgc:56059"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 ctttcttagc tgcatgcttc cagtgcgctg cagcctcatc cagcatcaat ctaatatcca
       61 cattttccgc ttaaaatggc tcttcacgtc cccaaagctc cgggctttgc tcagatgtta
      121 aaggatggtg cgaagcacta ttcaggtctt gaggaagctg ttttcaggaa catacaggca
      181 tgcaaggaat tggcacaaac cacaagaact gcttatggac ccaatggtat gaacaaaatg
      241 gtcatcaacc acttggagaa actgtttgtc actaatgatg ctgcaactat tctgagagag
      301 ctggaggttc agcacccagc agccaaaatg atagtgatgg cgtcccacat gcaggagcag
      361 gaagtaggcg atggcacaaa ctttgttctg gtgtttgctg gagctctgct ggagcttgca
      421 gaggagctac tgagaatggg tctttcagtt tcagaggtga ttgagggcta tgagatggct
      481 tgtaagaaag ctctggaaat tctgcctgat tgcgtctgct cttctgcaaa gaatctgcat
      541 gatctggagg aggcgacagc catgatccgc tctgctgtca tgagcaaaca atacggcaat
      601 gaggatttcc tggccaacct cattgcacag gcctgcgtct ccatcttccc tgagtctggt
      661 agttttaatg ttgacaatgt cagagtatgc aaaattttgg gctgtggact gaactcttct
      721 actatgcttc acgggatggt gtttaagaaa gaggcagaag gtgatgtcac atcagtgaaa
      781 gatgcaaaga tagcagtgtt ctcctgtccg tttgactgca cggttactga aaccaaggga
      841 acagtactta tcaagaatgc agatgagctc atgaatttca gcaaaggaga ggaggacctg
      901 atggaggccc aggtgaaggc tattgcggat tcaggggcca gtgtggttgt gactgggggc
      961 aaagtcgctg atatggctct tcattatgcc aacaagtaca agctcatggt ggtcaggctt
     1021 aactcaaaat gggacctcag aagactatgc aaaactgtcg gagccacagc attgcccaga
     1081 ctgacttccc ctaccccaga agagatggga cgctgtgaca gtgtttacct gtctgaggtt
     1141 ggagatacac aggttgtggt cttcaaacat gataaagaag acggtgccat ctctacttta
     1201 gtcattcgcg ggtccacaga taacctaatg gatgacattg agcgtgccat tgatgatgga
     1261 gtgaacactt tcaaagtcct tgtcagggat gcacgtcttt gtccaggtgc tggtgccact
     1321 gaaattgagc tggcgaagca catcacctcg tatggagaat cttgcccagg cctggagcag
     1381 tacgccatca agaagtacgc agaggcattt gaagcactgc cccgtgcgct ggcagaaaac
     1441 tctggtgtga agggcaacga gctgatctcc aaattgtacg ccacacatca cgagggcaac
     1501 aagaactcag gctttgacat tgagggagag ggtcctgcag tgagagacat gatggaggca
     1561 ggcatcctcg atccatacct agtcaagtac tggggcatca aactggccac aaacgcagcc
     1621 atcactgtcc tccgtgtgga tcagatcatt atggcaaagc cagcaggggg acccaaagcc
     1681 cctaaacagc aaggacactg ggacaaggac ggctgggatg atgaaccaga taaatttgat
     1741 gcacatcatt aataagaaat cctaaataat agcaaagata ataatggcca agccggctgg
     1801 tggacccaaa gctccacaag gaaagaagga ctgggatgag gatgaatgat gacattaggc
     1861 tgttttgttt ccctgtcacc gtcttagctt ttcaagtgtt gtgtatttaa tatctgcccc
     1921 ccattctctc tttttttttt tgtatttttt taggagtcgc catgtacatt aactgagtgg
     1981 ctacgagctg tattctggtc ccaataaagg cacttgagct gtca
//
Feature
Display: FASTA GenBank Help
Details

Supplemental Content

Change region shown

Customize view

Reference sequence information

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
External link. Please review our privacy policy.