Warning: The NCBI web site requires JavaScript to function. more...
An official website of the United States government
The .gov means it's official. Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you're on a federal government site.
The site is secure. The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.
Download features.
Download gene features.
NCBI Reference Sequence: XM_005155366.4
FASTA Graphics
LOCUS XM_005155366 2024 bp mRNA linear VRT 08-SEP-2024 DEFINITION PREDICTED: Danio rerio chaperonin containing TCP1, subunit 8 (theta) (cct8), transcript variant X1, mRNA. ACCESSION XM_005155366 VERSION XM_005155366.4 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007121.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2024 this sequence version replaced XM_005155366.3. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_000002035.6-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/15/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2024 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="10" gene 1..2024 /gene="cct8" /gene_synonym="fa22h09; wu:fa22h09; zgc:56059" /note="chaperonin containing TCP1, subunit 8 (theta); Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 61 ESTs, 203 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 151 samples with support for all annotated introns" /db_xref="GeneID:394037" /db_xref="ZFIN:ZDB-GENE-040426-876" misc_feature 1 /gene="cct8" /gene_synonym="fa22h09; wu:fa22h09; zgc:56059" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 76..1752 /gene="cct8" /gene_synonym="fa22h09; wu:fa22h09; zgc:56059" /codon_start=1 /product="T-complex protein 1 subunit theta isoform X1" /protein_id="XP_005155423.1" /db_xref="GeneID:394037" /db_xref="ZFIN:ZDB-GENE-040426-876" /translation="MALHVPKAPGFAQMLKDGAKHYSGLEEAVFRNIQACKELAQTTR TAYGPNGMNKMVINHLEKLFVTNDAATILRELEVQHPAAKMIVMASHMQEQEVGDGTN FVLVFAGALLELAEELLRMGLSVSEVIEGYEMACKKALEILPDCVCSSAKNLHDLEEA TAMIRSAVMSKQYGNEDFLANLIAQACVSIFPESGSFNVDNVRVCKILGCGLNSSTML HGMVFKKEAEGDVTSVKDAKIAVFSCPFDCTVTETKGTVLIKNADELMNFSKGEEDLM EAQVKAIADSGASVVVTGGKVADMALHYANKYKLMVVRLNSKWDLRRLCKTVGATALP RLTSPTPEEMGRCDSVYLSEVGDTQVVVFKHDKEDGAISTLVIRGSTDNLMDDIERAI DDGVNTFKVLVRDARLCPGAGATEIELAKHITSYGESCPGLEQYAIKKYAEAFEALPR ALAENSGVKGNELISKLYATHHEGNKNSGFDIEGEGPAVRDMMEAGILDPYLVKYWGI KLATNAAITVLRVDQIIMAKPAGGPKAPKQQGHWDKDGWDDEPDKFDAHH" polyA_site 2024 /gene="cct8" /gene_synonym="fa22h09; wu:fa22h09; zgc:56059" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ctttcttagc tgcatgcttc cagtgcgctg cagcctcatc cagcatcaat ctaatatcca 61 cattttccgc ttaaaatggc tcttcacgtc cccaaagctc cgggctttgc tcagatgtta 121 aaggatggtg cgaagcacta ttcaggtctt gaggaagctg ttttcaggaa catacaggca 181 tgcaaggaat tggcacaaac cacaagaact gcttatggac ccaatggtat gaacaaaatg 241 gtcatcaacc acttggagaa actgtttgtc actaatgatg ctgcaactat tctgagagag 301 ctggaggttc agcacccagc agccaaaatg atagtgatgg cgtcccacat gcaggagcag 361 gaagtaggcg atggcacaaa ctttgttctg gtgtttgctg gagctctgct ggagcttgca 421 gaggagctac tgagaatggg tctttcagtt tcagaggtga ttgagggcta tgagatggct 481 tgtaagaaag ctctggaaat tctgcctgat tgcgtctgct cttctgcaaa gaatctgcat 541 gatctggagg aggcgacagc catgatccgc tctgctgtca tgagcaaaca atacggcaat 601 gaggatttcc tggccaacct cattgcacag gcctgcgtct ccatcttccc tgagtctggt 661 agttttaatg ttgacaatgt cagagtatgc aaaattttgg gctgtggact gaactcttct 721 actatgcttc acgggatggt gtttaagaaa gaggcagaag gtgatgtcac atcagtgaaa 781 gatgcaaaga tagcagtgtt ctcctgtccg tttgactgca cggttactga aaccaaggga 841 acagtactta tcaagaatgc agatgagctc atgaatttca gcaaaggaga ggaggacctg 901 atggaggccc aggtgaaggc tattgcggat tcaggggcca gtgtggttgt gactgggggc 961 aaagtcgctg atatggctct tcattatgcc aacaagtaca agctcatggt ggtcaggctt 1021 aactcaaaat gggacctcag aagactatgc aaaactgtcg gagccacagc attgcccaga 1081 ctgacttccc ctaccccaga agagatggga cgctgtgaca gtgtttacct gtctgaggtt 1141 ggagatacac aggttgtggt cttcaaacat gataaagaag acggtgccat ctctacttta 1201 gtcattcgcg ggtccacaga taacctaatg gatgacattg agcgtgccat tgatgatgga 1261 gtgaacactt tcaaagtcct tgtcagggat gcacgtcttt gtccaggtgc tggtgccact 1321 gaaattgagc tggcgaagca catcacctcg tatggagaat cttgcccagg cctggagcag 1381 tacgccatca agaagtacgc agaggcattt gaagcactgc cccgtgcgct ggcagaaaac 1441 tctggtgtga agggcaacga gctgatctcc aaattgtacg ccacacatca cgagggcaac 1501 aagaactcag gctttgacat tgagggagag ggtcctgcag tgagagacat gatggaggca 1561 ggcatcctcg atccatacct agtcaagtac tggggcatca aactggccac aaacgcagcc 1621 atcactgtcc tccgtgtgga tcagatcatt atggcaaagc cagcaggggg acccaaagcc 1681 cctaaacagc aaggacactg ggacaaggac ggctgggatg atgaaccaga taaatttgat 1741 gcacatcatt aataagaaat cctaaataat agcaaagata ataatggcca agccggctgg 1801 tggacccaaa gctccacaag gaaagaagga ctgggatgag gatgaatgat gacattaggc 1861 tgttttgttt ccctgtcacc gtcttagctt ttcaagtgtt gtgtatttaa tatctgcccc 1921 ccattctctc tttttttttt tgtatttttt taggagtcgc catgtacatt aactgagtgg 1981 ctacgagctg tattctggtc ccaataaagg cacttgagct gtca //
Whole sequence Selected region from: to:
All features Gene, RNA, and CDS features only
Show sequence Show reverse complement Show gap features
Your browsing activity is empty.
Activity recording is turned off.
Turn recording back on