LOCUS VBCZ01000000 498 rc DNA linear ENV 29-MAY-2019
DEFINITION MAG: Betaproteobacteria bacterium isolate BP_30, whole genome
shotgun sequencing project.
ACCESSION VBCZ00000000
VERSION VBCZ00000000.1
DBLINK BioProject: PRJNA449266
BioSample: SAMN11380357
KEYWORDS WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE Betaproteobacteria bacterium (soil metagenome)
ORGANISM Betaproteobacteria bacterium
Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria.
REFERENCE 1 (bases 1 to 498)
AUTHORS Diamond,S., Andeer,P.F., Li,Z., Crits-Christoph,A., Burstein,D.,
Anantharaman,K., Lane,K.R., Thomas,B.C., Pan,C., Northen,T.R. and
Banfield,J.F.
TITLE Mediterranean grassland soil C-N compound turnover is dependent on
rainfall and depth, and is mediated by genomically divergent
microorganisms
JOURNAL Nat Microbiol (2019) In press
PUBMED 31110364
REMARK Publication Status: Available-Online prior to print
REFERENCE 2 (bases 1 to 498)
AUTHORS Diamond,S. and Banfield,J.F.
TITLE Direct Submission
JOURNAL Submitted (01-MAY-2019) Earth and Planetary Science, Jill
Banfield's Lab at Berkeley, University of California, Berkeley, CA
94720, USA
COMMENT The Betaproteobacteria bacterium whole genome shotgun (WGS) project
has the project accession VBCZ00000000. This version of the
project (01) has the accession number VBCZ01000000, and consists of
sequences VBCZ01000001-VBCZ01000498.
The annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (PGAP). Information about PGAP can be found here:
https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: IDBA_UD v. 1.1.1
Genome Representation :: Full
Expected Final Version :: Yes
Genome Coverage :: 7x
Sequencing Technology :: Illumina HiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 05/15/2019 20:08:26
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline (PGAP)
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.8
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 3,848
CDSs (total) :: 3,807
Genes (coding) :: 3,453
CDSs (with protein) :: 3,453
Genes (RNA) :: 41
rRNAs :: 1 (5S)
complete rRNAs :: 1 (5S)
tRNAs :: 37
ncRNAs :: 3
Pseudo Genes (total) :: 354
CDSs (without protein) :: 354
Pseudo Genes (ambiguous residues) :: 56 of 354
Pseudo Genes (frameshifted) :: 241 of 354
Pseudo Genes (incomplete) :: 55 of 354
Pseudo Genes (internal stop) :: 43 of 354
Pseudo Genes (multiple problems) :: 38 of 354
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..498
/organism="Betaproteobacteria bacterium"
/mol_type="genomic DNA"
/isolate="BP_30"
/isolation_source="temperate grassland biome"
/db_xref="taxon:1891241"
/environmental_sample
/geo_loc_name="USA: Angelo Coast Range Reserve, CA"
/lat_lon="39.74 N 123.63 W"
/collection_date="2014-09-03"
/metagenome_source="soil metagenome"
/note="metagenomic"
WGS VBCZ01000001-VBCZ01000498
//