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MAG: Betaproteobacteria bacterium isolate BP_30, whole genome shotgun sequencing project

GenBank: VBCZ00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       VBCZ01000000             498 rc    DNA     linear   ENV 29-MAY-2019
DEFINITION  MAG: Betaproteobacteria bacterium isolate BP_30, whole genome
            shotgun sequencing project.
ACCESSION   VBCZ00000000
VERSION     VBCZ00000000.1
DBLINK      BioProject: PRJNA449266
            BioSample: SAMN11380357
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE      Betaproteobacteria bacterium (soil metagenome)
  ORGANISM  Betaproteobacteria bacterium
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Diamond,S., Andeer,P.F., Li,Z., Crits-Christoph,A., Burstein,D.,
            Anantharaman,K., Lane,K.R., Thomas,B.C., Pan,C., Northen,T.R. and
            Banfield,J.F.
  TITLE     Mediterranean grassland soil C-N compound turnover is dependent on
            rainfall and depth, and is mediated by genomically divergent
            microorganisms
  JOURNAL   Nat Microbiol (2019) In press
   PUBMED   31110364
  REMARK    Publication Status: Available-Online prior to print
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Diamond,S. and Banfield,J.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (01-MAY-2019) Earth and Planetary Science, Jill
            Banfield's Lab at Berkeley, University of California, Berkeley, CA
            94720, USA
COMMENT     The Betaproteobacteria bacterium whole genome shotgun (WGS) project
            has the project accession VBCZ00000000.  This version of the
            project (01) has the accession number VBCZ01000000, and consists of
            sequences VBCZ01000001-VBCZ01000498.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: IDBA_UD v. 1.1.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 7x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/15/2019 20:08:26
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.8
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 3,848
            CDSs (total)                      :: 3,807
            Genes (coding)                    :: 3,453
            CDSs (with protein)               :: 3,453
            Genes (RNA)                       :: 41
            rRNAs                             :: 1 (5S)
            complete rRNAs                    :: 1 (5S)
            tRNAs                             :: 37
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 56 of 354
            Pseudo Genes (frameshifted)       :: 241 of 354
            Pseudo Genes (incomplete)         :: 55 of 354
            Pseudo Genes (internal stop)      :: 43 of 354
            Pseudo Genes (multiple problems)  :: 38 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Betaproteobacteria bacterium"
                     /mol_type="genomic DNA"
                     /isolate="BP_30"
                     /isolation_source="temperate grassland biome"
                     /db_xref="taxon:1891241"
                     /environmental_sample
                     /geo_loc_name="USA: Angelo Coast Range Reserve, CA"
                     /lat_lon="39.74 N 123.63 W"
                     /collection_date="2014-09-03"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
WGS         VBCZ01000001-VBCZ01000498
//
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