LOCUS RXDE01000000 55 rc DNA linear BCT 27-DEC-2018
DEFINITION Pseudomonas aeruginosa strain Jp60, whole genome shotgun sequencing
project.
ACCESSION RXDE00000000
VERSION RXDE00000000.1
DBLINK BioProject: PRJNA325248
BioSample: SAMN10478472
KEYWORDS WGS.
SOURCE Pseudomonas aeruginosa
ORGANISM Pseudomonas aeruginosa
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE 1 (bases 1 to 55)
AUTHORS Jeukens,J., Emond-Rheault,J.-G., Freschi,L., Kukavica-Ibrulj,I. and
Levesque,R.C.
TITLE Major release of 161 whole genome sequences from the International
Pseudomonas Consortium Database
JOURNAL Microbiol Resour Announc (2019) In press
REFERENCE 2 (bases 1 to 55)
AUTHORS Jeukens,J., Emond-Rheault,J.-G., Freschi,L., Kukavica-Ibrulj,I. and
Levesque,R.C.
TITLE Direct Submission
JOURNAL Submitted (10-DEC-2018) IBIS, University Laval, 1030 Av. de la
Medecine, Quebec, Quebec G1V0A6, Canada
COMMENT The Pseudomonas aeruginosa whole genome shotgun (WGS) project has
the project accession RXDE00000000. This version of the project
(01) has the accession number RXDE01000000, and consists of
sequences RXDE01000001-RXDE01000055.
Source DNA available from Roger C. Levesque.
Annotation was added by the NCBI Prokaryotic Genome Annotation
Pipeline (released 2013). Information about the Pipeline can be
found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
##Genome-Assembly-Data-START##
Assembly Method :: A5 pipeline (Miseq, Linux) v. 20140521
Genome Coverage :: 32x
Sequencing Technology :: Illumina MiSeq
##Genome-Assembly-Data-END##
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Date :: 12/18/2018 16:00:33
Annotation Pipeline :: NCBI Prokaryotic Genome
Annotation Pipeline
Annotation Method :: Best-placed reference protein
set; GeneMarkS-2+
Annotation Software revision :: 4.7
Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;
repeat_region
Genes (total) :: 6,763
CDSs (total) :: 6,696
Genes (coding) :: 6,598
CDSs (with protein) :: 6,598
Genes (RNA) :: 67
rRNAs :: 4, 1, 1 (5S, 16S, 23S)
complete rRNAs :: 4, 1, 1 (5S, 16S, 23S)
tRNAs :: 57
ncRNAs :: 4
Pseudo Genes (total) :: 98
CDSs (without protein) :: 98
Pseudo Genes (ambiguous residues) :: 0 of 98
Pseudo Genes (frameshifted) :: 46 of 98
Pseudo Genes (incomplete) :: 55 of 98
Pseudo Genes (internal stop) :: 15 of 98
Pseudo Genes (multiple problems) :: 17 of 98
CRISPR Arrays :: 4
##Genome-Annotation-Data-END##
FEATURES Location/Qualifiers
source 1..55
/organism="Pseudomonas aeruginosa"
/mol_type="genomic DNA"
/strain="Jp60"
/isolation_source="Sea water (coastal)"
/db_xref="taxon:287"
/geo_loc_name="Japan: Suruga Bay"
/collection_date="2004"
WGS RXDE01000001-RXDE01000055
//