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Pseudomonas aeruginosa strain Jp60, whole genome shotgun sequencing project

GenBank: RXDE00000000.1

  • This entry is the master record for a whole genome shotgun sequencing project and contains no sequence data.

LOCUS       RXDE01000000              55 rc    DNA     linear   BCT 27-DEC-2018
DEFINITION  Pseudomonas aeruginosa strain Jp60, whole genome shotgun sequencing
            project.
ACCESSION   RXDE00000000
VERSION     RXDE00000000.1
DBLINK      BioProject: PRJNA325248
            BioSample: SAMN10478472
KEYWORDS    WGS.
SOURCE      Pseudomonas aeruginosa
  ORGANISM  Pseudomonas aeruginosa
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Pseudomonadales; Pseudomonadaceae; Pseudomonas.
REFERENCE   1  (bases 1 to 55)
  AUTHORS   Jeukens,J., Emond-Rheault,J.-G., Freschi,L., Kukavica-Ibrulj,I. and
            Levesque,R.C.
  TITLE     Major release of 161 whole genome sequences from the International
            Pseudomonas Consortium Database
  JOURNAL   Microbiol Resour Announc (2019) In press
REFERENCE   2  (bases 1 to 55)
  AUTHORS   Jeukens,J., Emond-Rheault,J.-G., Freschi,L., Kukavica-Ibrulj,I. and
            Levesque,R.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (10-DEC-2018) IBIS, University Laval, 1030 Av. de la
            Medecine, Quebec, Quebec G1V0A6, Canada
COMMENT     The Pseudomonas aeruginosa whole genome shotgun (WGS) project has
            the project accession RXDE00000000.  This version of the project
            (01) has the accession number RXDE01000000, and consists of
            sequences RXDE01000001-RXDE01000055.
            Source DNA available from Roger C. Levesque.
            Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method       :: A5 pipeline (Miseq, Linux) v. 20140521
            Genome Coverage       :: 32x
            Sequencing Technology :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 12/18/2018 16:00:33
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 4.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 6,763
            CDSs (total)                      :: 6,696
            Genes (coding)                    :: 6,598
            CDSs (with protein)               :: 6,598
            Genes (RNA)                       :: 67
            rRNAs                             :: 4, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 4, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 57
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 98
            CDSs (without protein)            :: 98
            Pseudo Genes (ambiguous residues) :: 0 of 98
            Pseudo Genes (frameshifted)       :: 46 of 98
            Pseudo Genes (incomplete)         :: 55 of 98
            Pseudo Genes (internal stop)      :: 15 of 98
            Pseudo Genes (multiple problems)  :: 17 of 98
            CRISPR Arrays                     :: 4
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..55
                     /organism="Pseudomonas aeruginosa"
                     /mol_type="genomic DNA"
                     /strain="Jp60"
                     /isolation_source="Sea water (coastal)"
                     /db_xref="taxon:287"
                     /geo_loc_name="Japan: Suruga Bay"
                     /collection_date="2004"
WGS         RXDE01000001-RXDE01000055
//
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