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MAG: Bacillota bacterium isolate ZC3RG09 NODE_7515_length_2646_cov_4.822946, whole genome shotgun sequence

GenBank: QGSS01000272.1

FASTA Graphics 

LOCUS       QGSS01000272            2646 bp    DNA     linear   ENV 14-AUG-2018
DEFINITION  MAG: Bacillota bacterium isolate ZC3RG09
            NODE_7515_length_2646_cov_4.822946, whole genome shotgun sequence.
ACCESSION   QGSS01000272 QGSS01000000
VERSION     QGSS01000272.1
DBLINK      BioProject: PRJNA420721
            BioSample: SAMN09092868
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG.
SOURCE      Bacillota bacterium (compost metagenome)
  ORGANISM  Bacillota bacterium
            Bacteria; Bacillati; Bacillota.
REFERENCE   1  (bases 1 to 2646)
  AUTHORS   Moura,L. and Setubal,J.C.
  TITLE     Direct Submission
  JOURNAL   Submitted (08-MAY-2018) Bioquimica, Instituto de Quimica, Av. Prof.
            Lineu Prestes, 748, Sao Paulo, SP 05508-000, Brazil
COMMENT     Annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (released 2013). Information about the Pipeline can be
            found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: SPAdes v. 3.11
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 4.5x
            Sequencing Technology  :: Illumina MiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 05/24/2018 16:54:04
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS+
            Annotation Software revision      :: 4.5
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Genes (total)                     :: 2,516
            CDS (total)                       :: 2,463
            Genes (coding)                    :: 2,432
            CDS (coding)                      :: 2,432
            Genes (RNA)                       :: 53
            rRNAs                             :: 2, 1 (5S, 16S)
            complete rRNAs                    :: 2, 1 (5S, 16S)
            tRNAs                             :: 45
            ncRNAs                            :: 5
            Pseudo Genes (total)              :: 31
            Pseudo Genes (ambiguous residues) :: 0 of 31
            Pseudo Genes (frameshifted)       :: 2 of 31
            Pseudo Genes (incomplete)         :: 30 of 31
            Pseudo Genes (internal stop)      :: 0 of 31
            Pseudo Genes (multiple problems)  :: 1 of 31
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2646
                     /organism="Bacillota bacterium"
                     /mol_type="genomic DNA"
                     /submitter_seqid="NODE_7515_length_2646_cov_4.822946"
                     /isolate="ZC3RG09"
                     /isolation_source="Zoo Composter number 3"
                     /db_xref="taxon:1879010"
                     /environmental_sample
                     /geo_loc_name="Brazil: Sao Paulo Zoo"
                     /lat_lon="23.650840 S 46.620510 W"
                     /collection_date="Jun-2011"
                     /metagenome_source="compost metagenome"
                     /note="metagenomic"
     gene            complement(<1..677)
                     /locus_tag="DIU82_11700"
     CDS             complement(<1..677)
                     /locus_tag="DIU82_11700"
                     /inference="COORDINATES: protein motif:HMM:PF13458.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="REJ32809.1"
                     /translation="MFVSTEGQARALGFALVLALGFALGLAGVVPASAQQPIRIGLQG
                     PITGPWALEGEMAVNSVQIVVDQINARGGILGRPVELVIGDDQGEVRQSALTAQRMVA
                     EGVVAVISSYGSSITEAAQLIYEDAGLVNIAYGATAESLTQHGHRYFFRTSFRDDRQG
                     DFFAELVTKHLNLQRVAIVHDNSTFARGLAEAARRSLAGKPGVEVVFYDAVTAGERDF
                     TAVISRMR"
     gene            complement(924..1346)
                     /locus_tag="DIU82_11705"
     CDS             complement(924..1346)
                     /locus_tag="DIU82_11705"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="REJ32810.1"
                     /translation="MPVTLTTGMFPVAQLPAAQVVSVRVFLGNLENRPHRASVTVSRL
                     NGGAKELIRMEELEVPGDDVRTVELPSAEVEGHTIEVTVSVPTNGFGTGQLPVVPGVA
                     VVSLFTGDQTTSILQWISSDGFVAVGETASPVPVRAGS"
     gene            complement(1431..2300)
                     /locus_tag="DIU82_11710"
     CDS             complement(1431..2300)
                     /locus_tag="DIU82_11710"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="REJ32811.1"
                     /translation="MNRFKKRLVLTRTGGTIIRIRRRRGTARPRTAFDTAPELPAELA
                     AYATEAAEQPMVTSESTAVEAEPVAQAEAAAQVTEAAAEATVAPARATDTPAQATDTP
                     VQAADAPAQAADAPVELTGAQMTETAAQVTETAAQVTKAAVGPAESPLRAAAAPAEPA
                     PGFPLSEPFRDELEVRGLRTTGLFAVPSDSVIQLVILISSFADQEQTANVWVRRVEDD
                     ELRTVFFRSLTVPAGGVQQVTVDGLAGQTIRIDVEVPSDLLVPTAAITQYFLADGAII
                     VRVYKSPADFVPV"
     gene            2486..>2646
                     /locus_tag="DIU82_11715"
     CDS             2486..>2646
                     /locus_tag="DIU82_11715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="REJ32812.1"
                     /translation="MSSVSAGESKRVLIVNADDLGLTDGVTEGIVQAWRGGVGTSAAA
                     LINMEGGGGG"
ORIGIN      
        1 cgcatgcggc tgatgacggc ggtgaagtcc cgctcgcccg cggtcaccgc atcatagaac
       61 acgacttcca caccgggctt gcccgccagc gaccggcggg ccgcctcggc caggccccgg
      121 gcgaaggtgg agttgtcatg cacgatcgcg acgcgctgca ggttcaggtg cttggtgacc
      181 agctcggcga agaaatcgcc ctggcggtca tcgcggaagg aggttcggaa gaagtagcga
      241 tggccgtgct gggtcaggct ctccgcggtg gcgccatagg cgatgttgac cagcccggcg
      301 tcctcgtaga tgagctgtgc ggcttccgtg atcgacgaac cgtacgagct gatgacggcc
      361 acgacgcctt cggcgaccat gcgctgggcc gtcaaggccg actggcgcac ctcgccctgg
      421 tcgtcgccga tcacgagctc caccggccgg ccgaggatgc cgccccgggc gttgatctgg
      481 tcaacgacaa tctgcacgga gttgaccgcc atctcgccct ccagcgccca cgggcccgta
      541 atcggcccct gcaggccgat ccggatcggc tgctgcgcgc tggccggaac aacgcccgcc
      601 aggcccagcg cgaagcccag ggcgagcacc agcgcaaaac ctaaggcgcg cgcctgcccc
      661 tccgtcgaga caaacatccg acgctgcaag aaggttccct cctactcctg gtatgatatc
      721 gaaaattcgc cgttgcgcat cttcggcgga gtgtatgggg atacctgctc tttgcgcaaa
      781 ttcgcgcggg gtgggtgcgc tggccggcgc gcatcggcgc tgcgtactcc cgggcgcgcg
      841 aatagcgcat gaggcggcgc atggcaggcg tgcatgggcg gtgctccagg aggcccggag
      901 caggtgtgca ccggggtgcg aggctatgat ccggcgcgca ccggcaccgg gctggcggtt
      961 tcaccgacgg caacgaaacc gtcggaggag atccattgca ggatggacgt ggtctgatcg
     1021 ccggtaaaaa gggacactac cgcgacgccg ggcacgacgg gcagctggcc ggtgccaaag
     1081 ccgttggtcg gcacggagac ggtaacctcg atggtgtgcc cttccacttc ggcgctcggc
     1141 agctccacgg tccgcacgtc gtccccgggc acctccagtt cctccatccg gatgagctcc
     1201 ttggcgccgc cgttcaagcg ggaaaccgtt acgcttgccc ggtgaggccg attttccaag
     1261 ttgccgagaa acacccgcac cgacaccacc tgggccgcgg gcagctgggc cacgggaaac
     1321 atgccggtgg tcaaggtcac aggcacggag cgattccccc tctaaacggc cagactaagc
     1381 agccggacta gccgacccca aaccacgcaa gatcgattat tctaggcgtt ctagaccggc
     1441 acaaagtccg caggcgactt gtagacacgg acgatgatgg ccccgtcggc taggaagtac
     1501 tgggtgatcg ctgccgtggg caccaagaga tcggacggga cctccacgtc gatccggatc
     1561 gtttggcccg cgagcccgtc cacggtcacc tgctgcacgc cgcccgcggg caccgtgagg
     1621 gaccgaaaga acaccgtccg aagctcgtcg tcctccacgc gccgcaccca gacgttggcg
     1681 gtctgctctt ggtcggcgaa gctgctaatc agtatgacca gctggatgac gctgtcgctg
     1741 ggcacggcaa acaggccggt ggtgcgcagg ccccgtacct ccagctcatc ccggaaaggc
     1801 tcgctcagcg ggaaaccggg ggctggttcg gccggcgccg cggctgctct gagcggggat
     1861 tccgctgggc cgacggcggc tttcgtcacc tgggctgcag tctccgttac ctgggctgca
     1921 gtctccgtca tttgcgctcc ggtcaactcg actggcgcat ccgccgcctg ggccggtgca
     1981 tccgccgctt ggaccggcgt atccgttgcc tgggccggcg tatccgttgc ccgggccggt
     2041 gcaaccgtcg cctcagccgc ggcttctgtc acctgagccg ctgcctccgc ctgggccacc
     2101 ggctcggcct cgacagccgt tgactcgctg gttaccatcg gctgctccgc cgcctcggtt
     2161 gcgtaggcgg ccaactctgc cggcagctcc ggcgcggtgt cgaaagctgt ccggggccga
     2221 gccgtccccc gccggcgccg gatgcggatg atggtaccgc cggtgcgggt gagcacgagg
     2281 cgcttcttga accggttcac gattcactcc ccttttccgc cgccgcggcc aagcgacagg
     2341 atccgcggcc gtaacgtagg aatccgttac tggtgcgcta tgatatgcgg gcattgggct
     2401 acgtggcccc acatcaccgc gggcatagcg ctggcatagg ggcgggctgc ccgcacccgc
     2461 gggttgtgag gaggcgtcca gcggcatgtc gtcggtgtca gccggggaat cgaagcgggt
     2521 tttgattgtc aacgcggacg atctcggtct tacggacggg gtcacggaag gcatcgtgca
     2581 ggcgtggcgg gggggcgtgg ggacctccgc ggccgccctg atcaacatgg aggggggggg
     2641 cggggg
//
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